Wall clock time and date at job start Wed Apr 1 2020 04:31:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86796 * 120.00468 * 2 1 4 4 H 1.48505 * 109.47603 * 240.00073 * 3 2 1 5 5 H 1.48505 * 109.46968 * 359.97438 * 3 2 1 6 6 H 1.48497 * 109.47345 * 119.99684 * 3 2 1 7 7 C 1.37875 * 119.99829 * 179.97438 * 2 1 3 8 8 H 1.08008 * 120.00164 * 179.97438 * 7 2 1 9 9 C 1.50704 * 120.00240 * 0.02562 * 7 2 1 10 10 O 1.42903 * 110.63538 * 298.31185 * 9 7 2 11 11 C 1.55156 * 110.71965 * 61.44641 * 9 7 2 12 12 C 1.54906 * 101.61451 * 153.84937 * 11 9 7 13 13 N 1.47471 * 104.81210 * 323.04512 * 12 11 9 14 14 S 1.65600 * 125.62722 * 204.13266 * 13 12 11 15 15 O 1.42104 * 104.27619 * 25.99558 * 14 13 12 16 16 O 1.42100 * 104.27313 * 153.84946 * 14 13 12 17 17 C 1.81394 * 104.45248 * 269.92390 * 14 13 12 18 18 C 1.50704 * 109.47028 * 180.02562 * 17 14 13 19 19 C 1.38416 * 120.02269 * 269.71912 * 18 17 14 20 20 F 1.35106 * 120.01306 * 0.02562 * 19 18 17 21 21 C 1.38471 * 119.97552 * 179.79184 * 19 18 17 22 22 C 1.38209 * 120.02230 * 0.48676 * 21 19 18 23 23 C 1.38203 * 120.05438 * 359.74842 * 22 21 19 24 24 C 1.38421 * 120.02554 * 90.00090 * 18 17 14 25 25 F 1.35090 * 120.01135 * 359.97438 * 24 18 17 26 26 C 1.47017 * 108.71970 * 24.07007 * 13 12 11 27 27 H 0.97005 * 119.99288 * 0.02562 * 1 2 3 28 28 H 0.96698 * 114.00549 * 61.68763 * 10 9 7 29 29 H 1.09002 * 111.00677 * 271.94521 * 11 9 7 30 30 H 1.09002 * 111.00564 * 35.75779 * 11 9 7 31 31 H 1.09008 * 110.36753 * 81.85112 * 12 11 9 32 32 H 1.09001 * 110.37094 * 204.16995 * 12 11 9 33 33 H 1.09006 * 109.47242 * 299.99743 * 17 14 13 34 34 H 1.08999 * 109.47260 * 60.00116 * 17 14 13 35 35 H 1.08004 * 119.99442 * 180.23241 * 21 19 18 36 36 H 1.08002 * 119.97476 * 179.72215 * 22 21 19 37 37 H 1.08002 * 119.99124 * 179.97438 * 23 22 21 38 38 H 1.08998 * 109.88206 * 239.55467 * 26 13 12 39 39 H 1.09007 * 109.88177 * 118.39340 * 26 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2493 1.6176 0.0000 4 1 3.1031 1.6963 -1.2125 5 1 1.2843 2.7464 -0.0006 6 1 3.1030 1.6963 1.2125 7 6 2.0045 -1.1941 0.0005 8 1 3.0846 -1.1941 0.0001 9 6 1.2510 -2.4992 0.0005 10 8 0.4494 -2.6180 1.1776 11 6 0.3763 -2.6281 -1.2745 12 6 0.2717 -4.1661 -1.4268 13 7 1.5929 -4.6763 -1.0159 14 16 2.2571 -6.1199 -1.4823 15 8 1.6418 -6.4013 -2.7319 16 8 3.6589 -5.9074 -1.3873 17 6 1.7052 -7.3007 -0.2207 18 6 2.2528 -8.6682 -0.5389 19 6 1.5250 -9.5384 -1.3320 20 9 0.3234 -9.1620 -1.8217 21 6 2.0310 -10.7930 -1.6272 22 6 3.2578 -11.1803 -1.1221 23 6 3.9833 -10.3141 -0.3262 24 6 3.4814 -9.0571 -0.0335 25 9 4.1904 -8.2107 0.7449 26 6 2.2231 -3.6910 -0.1253 27 1 -0.4849 0.8401 -0.0004 28 1 -0.2287 -1.9338 1.2625 29 1 -0.6067 -2.1829 -1.1206 30 1 0.8738 -2.1831 -2.1362 31 1 -0.5068 -4.5599 -0.7732 32 1 0.0674 -4.4316 -2.4640 33 1 2.0672 -6.9833 0.7572 34 1 0.6159 -7.3385 -0.2102 35 1 1.4650 -11.4708 -2.2491 36 1 3.6498 -12.1607 -1.3493 37 1 4.9417 -10.6179 0.0683 38 1 3.1677 -3.3553 -0.5532 39 1 2.3950 -4.1344 0.8556 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000592078691.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:31:48 Heat of formation + Delta-G solvation = -176.361866 kcal Electronic energy + Delta-G solvation = -29098.079960 eV Core-core repulsion = 24576.149957 eV Total energy + Delta-G solvation = -4521.930003 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 347.084 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -49.29936 -49.27633 -39.27053 -38.07751 -36.89824 -35.73728 -34.31499 -33.52491 -32.19852 -30.70296 -29.20011 -28.29989 -27.79159 -24.83734 -23.27805 -22.60286 -21.57449 -19.82081 -18.68064 -18.44141 -17.73347 -17.64555 -17.01040 -16.81239 -16.28101 -15.92662 -15.73527 -15.57074 -15.52599 -14.94671 -14.72878 -14.52691 -14.27975 -14.06345 -13.28950 -13.25370 -13.11399 -12.97530 -12.47841 -12.17315 -12.12269 -12.07089 -11.89007 -11.87953 -11.84365 -11.62145 -11.32515 -11.26474 -11.05166 -10.83215 -10.50947 -10.39911 -10.09633 -9.36641 -9.25755 -9.14759 -8.65315 -8.40376 -8.19902 -6.26683 -4.34095 0.10785 0.55716 0.72765 2.86420 2.92902 3.24106 3.28454 3.32403 3.47373 3.75516 3.95310 4.08050 4.09561 4.27952 4.37003 4.42911 4.71011 4.91626 5.01602 5.11081 5.38933 5.41472 5.46207 5.50720 5.58525 5.71505 5.81060 5.99213 6.00225 6.20949 6.31476 6.33001 6.65265 6.76464 6.94878 7.01258 7.37008 7.40072 7.75414 8.04543 8.67958 9.31314 9.40076 10.80814 Molecular weight = 347.08amu Principal moments of inertia in cm(-1) A = 0.023978 B = 0.003084 C = 0.002924 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1167.471089 B = 9077.416310 C = 9573.591558 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.896 5.896 2 C 0.072 3.928 3 Si 0.903 3.097 4 H -0.275 1.275 5 H -0.286 1.286 6 H -0.275 1.275 7 C -0.536 4.536 8 H 0.065 0.935 9 C 0.250 3.750 10 O -0.587 6.587 11 C -0.129 4.129 12 C 0.111 3.889 13 N -1.003 6.003 14 S 2.622 3.378 15 O -0.948 6.948 16 O -0.944 6.944 17 C -0.599 4.599 18 C -0.162 4.162 19 C 0.143 3.857 20 F -0.118 7.118 21 C -0.164 4.164 22 C -0.056 4.056 23 C -0.163 4.163 24 C 0.144 3.856 25 F -0.116 7.116 26 C 0.134 3.866 27 H 0.268 0.732 28 H 0.382 0.618 29 H 0.087 0.913 30 H 0.068 0.932 31 H 0.058 0.942 32 H 0.069 0.931 33 H 0.149 0.851 34 H 0.148 0.852 35 H 0.149 0.851 36 H 0.149 0.851 37 H 0.150 0.850 38 H 0.078 0.922 39 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.135 -20.706 -1.064 20.843 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.535 5.535 2 C -0.130 4.130 3 Si 0.730 3.270 4 H -0.200 1.200 5 H -0.212 1.212 6 H -0.200 1.200 7 C -0.575 4.575 8 H 0.083 0.917 9 C 0.209 3.791 10 O -0.396 6.396 11 C -0.169 4.169 12 C -0.014 4.014 13 N -0.843 5.843 14 S 2.714 3.286 15 O -0.938 6.938 16 O -0.934 6.934 17 C -0.723 4.723 18 C -0.165 4.165 19 C 0.122 3.878 20 F -0.096 7.096 21 C -0.183 4.183 22 C -0.074 4.074 23 C -0.182 4.182 24 C 0.123 3.877 25 F -0.094 7.094 26 C 0.009 3.991 27 H 0.078 0.922 28 H 0.233 0.767 29 H 0.106 0.894 30 H 0.086 0.914 31 H 0.076 0.924 32 H 0.088 0.912 33 H 0.167 0.833 34 H 0.166 0.834 35 H 0.167 0.833 36 H 0.167 0.833 37 H 0.167 0.833 38 H 0.096 0.904 39 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges 2.905 -21.269 -1.709 21.534 hybrid contribution -0.508 1.473 0.687 1.703 sum 2.397 -19.796 -1.022 19.967 Atomic orbital electron populations 1.69690 1.05939 1.27706 1.50196 1.24985 0.95039 0.99502 0.93497 0.86476 0.79540 0.82065 0.78889 1.20035 1.21170 1.20017 1.21520 0.93735 0.90283 1.51958 0.91707 1.19455 0.86878 0.90500 0.82258 1.86093 1.51839 1.56564 1.45081 1.23275 1.02647 0.90133 1.00834 1.22255 0.82542 0.97903 0.98684 1.58512 1.30127 1.32325 1.63341 1.04772 0.74512 0.73720 0.75585 1.93573 1.78164 1.84652 1.37452 1.93589 1.29117 1.83787 1.86920 1.29778 1.12973 1.07579 1.21973 1.19097 0.96230 0.96516 1.04689 1.17259 0.82011 0.93183 0.95301 1.91586 1.41289 1.91484 1.85240 1.21261 0.98106 0.95234 1.03663 1.20957 0.92749 0.99676 0.94045 1.21274 1.02503 0.92382 1.02062 1.17276 0.89442 0.88735 0.92220 1.91596 1.76868 1.69731 1.71243 1.21909 0.96856 0.88899 0.91404 0.92189 0.76730 0.89434 0.91362 0.92392 0.91241 0.83262 0.83400 0.83288 0.83327 0.83251 0.90351 0.92453 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 19. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -22.92 10.67 55.43 0.59 -22.33 16 2 C 0.07 1.86 5.28 -17.82 -0.09 1.76 16 3 Si 0.90 20.28 29.54 -169.99 -5.02 15.26 16 4 H -0.27 -6.18 7.11 56.52 0.40 -5.78 16 5 H -0.29 -6.36 7.11 56.52 0.40 -5.96 16 6 H -0.27 -6.19 7.11 56.52 0.40 -5.79 16 7 C -0.54 -13.98 8.21 -34.44 -0.28 -14.26 16 8 H 0.06 1.68 7.57 -52.48 -0.40 1.28 16 9 C 0.25 5.97 0.85 -89.94 -0.08 5.90 16 10 O -0.59 -14.24 13.08 -35.23 -0.46 -14.70 16 11 C -0.13 -2.85 5.46 -24.58 -0.13 -2.99 16 12 C 0.11 2.11 7.07 -2.50 -0.02 2.09 16 13 N -1.00 -19.41 3.62 -111.39 -0.40 -19.81 16 14 S 2.62 46.66 5.63 -107.50 -0.61 46.05 16 15 O -0.95 -18.44 17.28 -57.54 -0.99 -19.43 16 16 O -0.94 -18.98 17.60 -57.54 -1.01 -19.99 16 17 C -0.60 -8.34 5.95 36.01 0.21 -8.13 16 18 C -0.16 -2.13 5.15 -104.49 -0.54 -2.67 16 19 C 0.14 1.71 7.24 -39.43 -0.29 1.42 16 20 F -0.12 -1.54 16.47 2.25 0.04 -1.51 16 21 C -0.16 -1.38 10.02 -39.51 -0.40 -1.78 16 22 C -0.06 -0.38 10.04 -39.60 -0.40 -0.78 16 23 C -0.16 -1.40 10.03 -39.51 -0.40 -1.80 16 24 C 0.14 1.75 7.24 -39.43 -0.29 1.46 16 25 F -0.12 -1.59 16.48 2.25 0.04 -1.55 16 26 C 0.13 2.88 6.25 -3.07 -0.02 2.86 16 27 H 0.27 6.62 8.31 -40.82 -0.34 6.28 16 28 H 0.38 9.35 7.46 45.56 0.34 9.69 16 29 H 0.09 1.98 7.54 -51.93 -0.39 1.59 16 30 H 0.07 1.57 8.04 -51.93 -0.42 1.15 16 31 H 0.06 1.01 8.14 -51.92 -0.42 0.58 16 32 H 0.07 1.24 7.67 -51.93 -0.40 0.84 16 33 H 0.15 1.90 7.64 -51.92 -0.40 1.51 16 34 H 0.15 1.81 7.63 -51.92 -0.40 1.41 16 35 H 0.15 0.85 8.06 -52.48 -0.42 0.43 16 36 H 0.15 0.46 8.06 -52.49 -0.42 0.04 16 37 H 0.15 0.89 8.06 -52.49 -0.42 0.46 16 38 H 0.08 1.72 7.66 -51.93 -0.40 1.32 16 39 H 0.06 1.16 8.07 -51.93 -0.42 0.74 16 LS Contribution 350.40 15.07 5.28 5.28 Total: -1.00 -30.87 350.40 -8.96 -39.83 By element: Atomic # 1 Polarization: 13.50 SS G_CDS: -3.70 Total: 9.80 kcal Atomic # 6 Polarization: -14.19 SS G_CDS: -2.71 Total: -16.90 kcal Atomic # 7 Polarization: -42.33 SS G_CDS: 0.19 Total: -42.14 kcal Atomic # 8 Polarization: -51.66 SS G_CDS: -2.47 Total: -54.12 kcal Atomic # 9 Polarization: -3.13 SS G_CDS: 0.07 Total: -3.06 kcal Atomic # 14 Polarization: 20.28 SS G_CDS: -5.02 Total: 15.26 kcal Atomic # 16 Polarization: 46.66 SS G_CDS: -0.61 Total: 46.05 kcal Total LS contribution 5.28 Total: 5.28 kcal Total: -30.87 -8.96 -39.83 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000592078691.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -136.527 kcal (2) G-P(sol) polarization free energy of solvation -30.874 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -167.401 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.961 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.835 kcal (6) G-S(sol) free energy of system = (1) + (5) -176.362 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds