Wall clock time and date at job start Wed Apr 1 2020 04:31:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86796 * 120.00468 * 2 1 4 4 H 1.48505 * 109.47603 * 240.00073 * 3 2 1 5 5 H 1.48505 * 109.46968 * 359.97438 * 3 2 1 6 6 H 1.48497 * 109.47345 * 119.99684 * 3 2 1 7 7 C 1.37875 * 119.99829 * 179.97438 * 2 1 3 8 8 H 1.08008 * 120.00164 * 179.97438 * 7 2 1 9 9 C 1.50704 * 120.00240 * 0.02562 * 7 2 1 10 10 O 1.42903 * 110.63538 * 298.31185 * 9 7 2 11 11 C 1.55156 * 110.71965 * 61.44641 * 9 7 2 12 12 C 1.54906 * 101.61451 * 153.84937 * 11 9 7 13 13 N 1.47471 * 104.81210 * 323.04512 * 12 11 9 14 14 S 1.65600 * 125.62722 * 204.13266 * 13 12 11 15 15 O 1.42104 * 104.27619 * 25.99558 * 14 13 12 16 16 O 1.42100 * 104.27313 * 153.84946 * 14 13 12 17 17 C 1.81394 * 104.45248 * 269.92390 * 14 13 12 18 18 C 1.50704 * 109.47028 * 180.02562 * 17 14 13 19 19 C 1.38416 * 120.02269 * 269.71912 * 18 17 14 20 20 F 1.35106 * 120.01306 * 0.02562 * 19 18 17 21 21 C 1.38471 * 119.97552 * 179.79184 * 19 18 17 22 22 C 1.38209 * 120.02230 * 0.48676 * 21 19 18 23 23 C 1.38203 * 120.05438 * 359.74842 * 22 21 19 24 24 C 1.38421 * 120.02554 * 90.00090 * 18 17 14 25 25 F 1.35090 * 120.01135 * 359.97438 * 24 18 17 26 26 C 1.47017 * 108.71970 * 24.07007 * 13 12 11 27 27 H 0.97005 * 119.99288 * 0.02562 * 1 2 3 28 28 H 0.96698 * 114.00549 * 61.68763 * 10 9 7 29 29 H 1.09002 * 111.00677 * 271.94521 * 11 9 7 30 30 H 1.09002 * 111.00564 * 35.75779 * 11 9 7 31 31 H 1.09008 * 110.36753 * 81.85112 * 12 11 9 32 32 H 1.09001 * 110.37094 * 204.16995 * 12 11 9 33 33 H 1.09006 * 109.47242 * 299.99743 * 17 14 13 34 34 H 1.08999 * 109.47260 * 60.00116 * 17 14 13 35 35 H 1.08004 * 119.99442 * 180.23241 * 21 19 18 36 36 H 1.08002 * 119.97476 * 179.72215 * 22 21 19 37 37 H 1.08002 * 119.99124 * 179.97438 * 23 22 21 38 38 H 1.08998 * 109.88206 * 239.55467 * 26 13 12 39 39 H 1.09007 * 109.88177 * 118.39340 * 26 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2493 1.6176 0.0000 4 1 3.1031 1.6963 -1.2125 5 1 1.2843 2.7464 -0.0006 6 1 3.1030 1.6963 1.2125 7 6 2.0045 -1.1941 0.0005 8 1 3.0846 -1.1941 0.0001 9 6 1.2510 -2.4992 0.0005 10 8 0.4494 -2.6180 1.1776 11 6 0.3763 -2.6281 -1.2745 12 6 0.2717 -4.1661 -1.4268 13 7 1.5929 -4.6763 -1.0159 14 16 2.2571 -6.1199 -1.4823 15 8 1.6418 -6.4013 -2.7319 16 8 3.6589 -5.9074 -1.3873 17 6 1.7052 -7.3007 -0.2207 18 6 2.2528 -8.6682 -0.5389 19 6 1.5250 -9.5384 -1.3320 20 9 0.3234 -9.1620 -1.8217 21 6 2.0310 -10.7930 -1.6272 22 6 3.2578 -11.1803 -1.1221 23 6 3.9833 -10.3141 -0.3262 24 6 3.4814 -9.0571 -0.0335 25 9 4.1904 -8.2107 0.7449 26 6 2.2231 -3.6910 -0.1253 27 1 -0.4849 0.8401 -0.0004 28 1 -0.2287 -1.9338 1.2625 29 1 -0.6067 -2.1829 -1.1206 30 1 0.8738 -2.1831 -2.1362 31 1 -0.5068 -4.5599 -0.7732 32 1 0.0674 -4.4316 -2.4640 33 1 2.0672 -6.9833 0.7572 34 1 0.6159 -7.3385 -0.2102 35 1 1.4650 -11.4708 -2.2491 36 1 3.6498 -12.1607 -1.3493 37 1 4.9417 -10.6179 0.0683 38 1 3.1677 -3.3553 -0.5532 39 1 2.3950 -4.1344 0.8556 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000592078691.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:31:47 Heat of formation + Delta-G solvation = -198.777083 kcal Electronic energy + Delta-G solvation = -29099.051957 eV Core-core repulsion = 24576.149957 eV Total energy + Delta-G solvation = -4522.902000 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 347.084 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -50.19669 -50.18477 -40.01884 -39.81134 -38.38285 -37.22497 -36.10542 -34.40407 -34.17556 -31.42074 -30.92020 -30.04865 -28.73657 -26.72934 -24.04599 -23.54621 -23.07442 -21.64483 -20.10837 -19.32143 -19.29246 -18.69662 -18.59860 -18.02219 -17.17965 -17.12224 -16.89312 -16.75285 -16.67312 -16.45329 -16.19780 -15.94821 -15.60281 -15.11292 -14.82808 -14.68908 -14.26783 -13.94970 -13.86553 -13.75428 -13.46972 -13.40215 -13.34058 -13.31385 -13.15570 -12.86571 -12.82395 -12.65325 -12.64142 -12.40546 -12.28968 -12.17650 -11.95423 -11.19801 -10.61580 -10.25796 -10.11504 -9.89865 -9.83593 -8.22644 -6.36733 -1.15351 -0.17547 -0.14898 1.42484 1.43900 1.45532 1.52569 2.22138 2.39812 2.56804 2.66998 2.81938 2.96879 3.03168 3.23534 3.40415 3.70047 3.74878 3.93216 4.04199 4.10129 4.19693 4.25032 4.41105 4.55764 4.62359 4.65199 4.65701 4.87449 4.93430 4.96007 5.08687 5.12957 5.20366 5.29092 5.52943 5.54269 5.62523 5.78747 6.10928 6.66606 7.33208 7.42430 8.83034 Molecular weight = 347.08amu Principal moments of inertia in cm(-1) A = 0.023978 B = 0.003084 C = 0.002924 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1167.471089 B = 9077.416310 C = 9573.591558 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.906 5.906 2 C 0.036 3.964 3 Si 0.958 3.042 4 H -0.276 1.276 5 H -0.279 1.279 6 H -0.274 1.274 7 C -0.566 4.566 8 H 0.055 0.945 9 C 0.238 3.762 10 O -0.588 6.588 11 C -0.124 4.124 12 C 0.115 3.885 13 N -1.010 6.010 14 S 2.622 3.378 15 O -0.970 6.970 16 O -0.976 6.976 17 C -0.573 4.573 18 C -0.194 4.194 19 C 0.119 3.881 20 F -0.131 7.131 21 C -0.155 4.155 22 C -0.034 4.034 23 C -0.156 4.156 24 C 0.115 3.885 25 F -0.134 7.134 26 C 0.138 3.862 27 H 0.271 0.729 28 H 0.379 0.621 29 H 0.079 0.921 30 H 0.050 0.950 31 H 0.079 0.921 32 H 0.081 0.919 33 H 0.159 0.841 34 H 0.165 0.835 35 H 0.180 0.820 36 H 0.199 0.801 37 H 0.178 0.822 38 H 0.065 0.935 39 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.428 -23.557 -1.071 23.706 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.545 5.545 2 C -0.166 4.166 3 Si 0.783 3.217 4 H -0.201 1.201 5 H -0.204 1.204 6 H -0.200 1.200 7 C -0.604 4.604 8 H 0.073 0.927 9 C 0.197 3.803 10 O -0.397 6.397 11 C -0.164 4.164 12 C -0.010 4.010 13 N -0.848 5.848 14 S 2.719 3.281 15 O -0.961 6.961 16 O -0.966 6.966 17 C -0.702 4.702 18 C -0.198 4.198 19 C 0.098 3.902 20 F -0.110 7.110 21 C -0.173 4.173 22 C -0.052 4.052 23 C -0.174 4.174 24 C 0.095 3.905 25 F -0.112 7.112 26 C 0.013 3.987 27 H 0.080 0.920 28 H 0.229 0.771 29 H 0.097 0.903 30 H 0.069 0.931 31 H 0.097 0.903 32 H 0.099 0.901 33 H 0.177 0.823 34 H 0.183 0.817 35 H 0.198 0.802 36 H 0.216 0.784 37 H 0.196 0.804 38 H 0.083 0.917 39 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges 3.200 -24.072 -1.755 24.348 hybrid contribution -0.566 2.163 0.691 2.340 sum 2.634 -21.910 -1.063 22.093 Atomic orbital electron populations 1.69754 1.06538 1.28358 1.49823 1.25602 0.95894 1.01956 0.93119 0.85620 0.78506 0.78934 0.78590 1.20133 1.20375 1.19976 1.21791 0.93635 0.91925 1.53038 0.92698 1.19578 0.87415 0.90712 0.82638 1.86077 1.51757 1.56307 1.45511 1.23093 1.01526 0.92462 0.99338 1.22236 0.83090 0.95649 1.00001 1.58457 1.29913 1.33254 1.63205 1.04654 0.73676 0.73721 0.76005 1.93533 1.78160 1.84800 1.39599 1.93540 1.31079 1.84430 1.87586 1.29408 1.13994 1.06959 1.19841 1.19180 0.97494 0.96176 1.06909 1.17652 0.81928 0.94591 0.96023 1.91548 1.42093 1.91811 1.85522 1.21752 0.98690 0.93980 1.02916 1.21579 0.91293 1.00944 0.91387 1.21748 1.03556 0.90854 1.01282 1.17716 0.89525 0.90107 0.93170 1.91548 1.77197 1.70570 1.71894 1.21684 0.95909 0.88921 0.92210 0.91978 0.77125 0.90258 0.93110 0.90325 0.90090 0.82307 0.81721 0.80231 0.78403 0.80425 0.91671 0.91531 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -46.75 10.67 21.45 0.23 -46.52 16 2 C 0.04 1.85 5.28 84.65 0.45 2.30 16 3 Si 0.96 41.91 29.54 68.60 2.03 43.94 16 4 H -0.28 -12.04 7.11 99.48 0.71 -11.33 16 5 H -0.28 -11.78 7.11 99.48 0.71 -11.07 16 6 H -0.27 -11.93 7.11 99.48 0.71 -11.22 16 7 C -0.57 -30.24 8.21 25.60 0.21 -30.03 16 8 H 0.05 2.95 7.57 -2.91 -0.02 2.93 16 9 C 0.24 11.60 0.85 -10.35 -0.01 11.60 16 10 O -0.59 -28.93 13.08 -148.98 -1.95 -30.88 16 11 C -0.12 -5.64 5.46 31.98 0.17 -5.46 16 12 C 0.11 4.38 7.07 86.85 0.61 5.00 16 13 N -1.01 -39.62 3.62 -506.33 -1.83 -41.45 16 14 S 2.62 94.43 5.63 -56.49 -0.32 94.12 16 15 O -0.97 -38.10 17.28 -127.65 -2.21 -40.31 16 16 O -0.98 -40.39 17.60 -127.65 -2.25 -42.63 16 17 C -0.57 -15.70 5.95 71.24 0.42 -15.28 16 18 C -0.19 -4.88 5.15 -19.78 -0.10 -4.99 16 19 C 0.12 2.61 7.24 22.37 0.16 2.77 16 20 F -0.13 -3.29 16.47 44.97 0.74 -2.55 16 21 C -0.15 -2.02 10.02 22.32 0.22 -1.79 16 22 C -0.03 -0.29 10.04 22.25 0.22 -0.07 16 23 C -0.16 -2.13 10.03 22.32 0.22 -1.91 16 24 C 0.12 2.65 7.24 22.37 0.16 2.81 16 25 F -0.13 -3.62 16.48 44.97 0.74 -2.88 16 26 C 0.14 6.10 6.25 86.73 0.54 6.64 16 27 H 0.27 13.35 8.31 -92.70 -0.77 12.58 16 28 H 0.38 18.86 7.46 -74.06 -0.55 18.31 16 29 H 0.08 3.67 7.54 -2.39 -0.02 3.65 16 30 H 0.05 2.42 8.04 -2.39 -0.02 2.40 16 31 H 0.08 2.67 8.14 -2.38 -0.02 2.65 16 32 H 0.08 2.89 7.67 -2.39 -0.02 2.87 16 33 H 0.16 4.01 7.64 -2.39 -0.02 3.99 16 34 H 0.16 3.88 7.63 -2.39 -0.02 3.87 16 35 H 0.18 1.19 8.06 -2.91 -0.02 1.17 16 36 H 0.20 -0.19 8.06 -2.91 -0.02 -0.21 16 37 H 0.18 1.35 8.06 -2.91 -0.02 1.33 16 38 H 0.06 3.00 7.66 -2.39 -0.02 2.98 16 39 H 0.07 2.76 8.07 -2.38 -0.02 2.74 16 Total: -1.00 -68.99 350.40 -0.96 -69.96 By element: Atomic # 1 Polarization: 27.07 SS G_CDS: 0.56 Total: 27.63 kcal Atomic # 6 Polarization: -31.70 SS G_CDS: 3.30 Total: -28.41 kcal Atomic # 7 Polarization: -86.37 SS G_CDS: -1.61 Total: -87.98 kcal Atomic # 8 Polarization: -107.42 SS G_CDS: -6.40 Total: -113.82 kcal Atomic # 9 Polarization: -6.92 SS G_CDS: 1.48 Total: -5.43 kcal Atomic # 14 Polarization: 41.91 SS G_CDS: 2.03 Total: 43.94 kcal Atomic # 16 Polarization: 94.43 SS G_CDS: -0.32 Total: 94.12 kcal Total: -68.99 -0.96 -69.96 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000592078691.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -128.819 kcal (2) G-P(sol) polarization free energy of solvation -68.994 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -197.813 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.964 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.958 kcal (6) G-S(sol) free energy of system = (1) + (5) -198.777 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds