Wall clock time and date at job start Wed Apr 1 2020 04:31:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31518 * 1 3 3 Si 1.86795 * 120.00139 * 2 1 4 4 H 1.48508 * 109.47021 * 180.27706 * 3 2 1 5 5 H 1.48500 * 109.47081 * 300.27550 * 3 2 1 6 6 H 1.48501 * 109.47213 * 60.27922 * 3 2 1 7 7 C 1.37885 * 119.99792 * 180.27823 * 2 1 3 8 8 H 1.07999 * 119.99964 * 179.72485 * 7 2 1 9 9 C 1.50700 * 120.00047 * 359.72305 * 7 2 1 10 10 O 1.42894 * 110.88687 * 56.11627 * 9 7 2 11 11 C 1.55160 * 111.00192 * 292.19942 * 9 7 2 12 12 C 1.54326 * 102.94105 * 206.42275 * 11 9 7 13 13 N 1.47021 * 107.27092 * 22.19229 * 12 11 9 14 14 S 1.65602 * 125.65005 * 181.09486 * 13 12 11 15 15 O 1.42101 * 104.27610 * 26.02864 * 14 13 12 16 16 O 1.42098 * 104.27682 * 153.88567 * 14 13 12 17 17 C 1.81396 * 104.44992 * 269.95590 * 14 13 12 18 18 C 1.50703 * 109.47101 * 179.97438 * 17 14 13 19 19 C 1.38415 * 120.02736 * 269.72971 * 18 17 14 20 20 F 1.35098 * 120.01133 * 359.97438 * 19 18 17 21 21 C 1.38479 * 119.97319 * 179.70186 * 19 18 17 22 22 C 1.38211 * 120.02108 * 0.59227 * 21 19 18 23 23 C 1.38206 * 120.05296 * 359.68261 * 22 21 19 24 24 C 1.38417 * 120.01903 * 90.00432 * 18 17 14 25 25 F 1.35096 * 120.01696 * 359.97438 * 24 18 17 26 26 C 1.47430 * 108.70297 * 1.05695 * 13 12 11 27 27 H 0.97000 * 119.99468 * 359.71811 * 1 2 3 28 28 H 0.96707 * 114.00533 * 300.70224 * 10 9 7 29 29 H 1.08996 * 110.72074 * 324.78198 * 11 9 7 30 30 H 1.08999 * 110.72615 * 88.06114 * 11 9 7 31 31 H 1.09003 * 109.88333 * 262.77568 * 12 11 9 32 32 H 1.08999 * 110.01569 * 141.67862 * 12 11 9 33 33 H 1.08994 * 109.47259 * 300.00107 * 17 14 13 34 34 H 1.09002 * 109.47055 * 60.00234 * 17 14 13 35 35 H 1.07996 * 119.98484 * 180.32148 * 21 19 18 36 36 H 1.08005 * 119.97039 * 179.70389 * 22 21 19 37 37 H 1.08001 * 119.98828 * 180.02562 * 23 22 21 38 38 H 1.08998 * 110.36673 * 217.03498 * 26 13 12 39 39 H 1.09002 * 110.36456 * 94.71380 * 26 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7092 1.3462 -0.0068 5 1 1.8854 2.3993 -1.2091 6 1 1.8956 2.3934 1.2159 7 6 2.0046 -1.1941 -0.0058 8 1 3.0845 -1.1941 -0.0103 9 6 1.2510 -2.4992 -0.0058 10 8 0.3471 -2.5656 -1.1105 11 6 0.5046 -2.7104 1.3379 12 6 0.4034 -4.2470 1.4393 13 7 1.4611 -4.8112 0.5882 14 16 1.7460 -6.4242 0.3441 15 8 0.4860 -7.0408 0.5712 16 8 2.3701 -6.4808 -0.9312 17 6 2.9215 -6.8787 1.6487 18 6 3.2617 -8.3421 1.5308 19 6 2.5089 -9.2850 2.2091 20 9 1.4690 -8.8939 2.9777 21 6 2.8186 -10.6299 2.0951 22 6 3.8866 -11.0298 1.3141 23 6 4.6424 -10.0887 0.6410 24 6 4.3307 -8.7437 0.7487 25 9 5.0695 -7.8241 0.0901 26 6 2.2257 -3.7031 -0.0128 27 1 -0.4849 0.8401 0.0041 28 1 -0.3136 -1.8594 -1.1212 29 1 1.0837 -2.3066 2.1684 30 1 -0.4874 -2.2601 1.3031 31 1 -0.5730 -4.5784 1.0858 32 1 0.5505 -4.5633 2.4719 33 1 3.8292 -6.2847 1.5430 34 1 2.4738 -6.6876 2.6240 35 1 2.2282 -11.3662 2.6201 36 1 4.1303 -12.0785 1.2296 37 1 5.4764 -10.4023 0.0307 38 1 2.5144 -3.9515 -1.0341 39 1 3.1075 -3.4809 0.5882 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000592078707.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:31:51 Heat of formation + Delta-G solvation = -175.990773 kcal Electronic energy + Delta-G solvation = -29092.655810 eV Core-core repulsion = 24570.741899 eV Total energy + Delta-G solvation = -4521.913912 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 347.084 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -49.31042 -49.28457 -39.27721 -38.03880 -36.86121 -35.69188 -34.26673 -33.53621 -32.11788 -30.70932 -29.30214 -28.27638 -27.81465 -24.86129 -23.28673 -22.61824 -21.49294 -19.81621 -18.68127 -18.43956 -17.74244 -17.60459 -17.13605 -16.72935 -16.31203 -15.93341 -15.65010 -15.58291 -15.52909 -14.96577 -14.74309 -14.52676 -14.14028 -14.10925 -13.38370 -13.22938 -13.12172 -12.83794 -12.49627 -12.44137 -12.14392 -11.95869 -11.88866 -11.82820 -11.77715 -11.69398 -11.30914 -11.25721 -11.01364 -10.77622 -10.51161 -10.42559 -10.03165 -9.41089 -9.27379 -9.15407 -8.68224 -8.34614 -8.15967 -6.28502 -4.36164 0.11012 0.55052 0.72836 2.88793 2.93065 3.18673 3.28029 3.31708 3.46519 3.76716 3.94161 4.07323 4.12247 4.25635 4.36596 4.44184 4.70442 4.91170 4.98877 5.08979 5.39754 5.40634 5.43594 5.49896 5.57774 5.70997 5.79121 5.93819 5.98197 6.23941 6.30902 6.41257 6.60729 6.77540 6.91624 7.02948 7.33066 7.35928 7.75094 8.02651 8.65781 9.32865 9.52974 10.79424 Molecular weight = 347.08amu Principal moments of inertia in cm(-1) A = 0.022911 B = 0.003086 C = 0.002922 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1221.829933 B = 9072.037692 C = 9580.930190 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.896 5.896 2 C 0.072 3.928 3 Si 0.904 3.096 4 H -0.272 1.272 5 H -0.282 1.282 6 H -0.283 1.283 7 C -0.535 4.535 8 H 0.066 0.934 9 C 0.254 3.746 10 O -0.582 6.582 11 C -0.136 4.136 12 C 0.121 3.879 13 N -1.001 6.001 14 S 2.622 3.378 15 O -0.947 6.947 16 O -0.942 6.942 17 C -0.601 4.601 18 C -0.162 4.162 19 C 0.143 3.857 20 F -0.118 7.118 21 C -0.164 4.164 22 C -0.056 4.056 23 C -0.163 4.163 24 C 0.144 3.856 25 F -0.116 7.116 26 C 0.126 3.874 27 H 0.269 0.731 28 H 0.385 0.615 29 H 0.067 0.933 30 H 0.082 0.918 31 H 0.063 0.937 32 H 0.048 0.952 33 H 0.149 0.851 34 H 0.147 0.853 35 H 0.149 0.851 36 H 0.149 0.851 37 H 0.150 0.850 38 H 0.078 0.922 39 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.112 -18.975 6.702 21.343 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.536 5.536 2 C -0.131 4.131 3 Si 0.731 3.269 4 H -0.196 1.196 5 H -0.208 1.208 6 H -0.209 1.209 7 C -0.574 4.574 8 H 0.084 0.916 9 C 0.212 3.788 10 O -0.392 6.392 11 C -0.176 4.176 12 C -0.004 4.004 13 N -0.841 5.841 14 S 2.714 3.286 15 O -0.937 6.937 16 O -0.932 6.932 17 C -0.724 4.724 18 C -0.165 4.165 19 C 0.122 3.878 20 F -0.096 7.096 21 C -0.183 4.183 22 C -0.074 4.074 23 C -0.182 4.182 24 C 0.123 3.877 25 F -0.094 7.094 26 C 0.002 3.998 27 H 0.079 0.921 28 H 0.237 0.763 29 H 0.086 0.914 30 H 0.101 0.899 31 H 0.082 0.918 32 H 0.066 0.934 33 H 0.167 0.833 34 H 0.165 0.835 35 H 0.167 0.833 36 H 0.167 0.833 37 H 0.168 0.832 38 H 0.096 0.904 39 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges 6.948 -19.939 5.896 21.922 hybrid contribution 0.483 1.910 0.982 2.202 sum 7.431 -18.028 6.878 20.678 Atomic orbital electron populations 1.69583 1.06015 1.27612 1.50387 1.25003 0.95012 0.99556 0.93508 0.86351 0.80084 0.82737 0.77687 1.19602 1.20780 1.20890 1.21549 0.93776 0.90266 1.51803 0.91566 1.19551 0.85987 0.90402 0.82862 1.86111 1.48422 1.55797 1.48917 1.23216 1.02931 0.90157 1.01291 1.21839 0.89803 0.97153 0.91620 1.58447 1.43014 1.21779 1.60853 1.04788 0.75389 0.72696 0.75754 1.93573 1.37927 1.75687 1.86554 1.93591 1.78807 1.85530 1.35265 1.29805 1.20540 0.99023 1.23078 1.19080 0.99566 0.93895 1.03981 1.17258 0.86131 0.92419 0.91960 1.91583 1.54462 1.91575 1.71992 1.21264 1.00325 0.93809 1.02854 1.20961 0.92699 1.00267 0.93491 1.21276 1.03130 0.90488 1.03314 1.17271 0.90110 0.87069 0.93228 1.91596 1.74545 1.65344 1.77963 1.22261 0.94294 0.85727 0.97538 0.92141 0.76327 0.91410 0.89945 0.91827 0.93352 0.83317 0.83483 0.83286 0.83320 0.83244 0.90372 0.91324 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 20. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -23.10 10.81 55.43 0.60 -22.50 16 2 C 0.07 1.82 5.31 -17.82 -0.09 1.73 16 3 Si 0.90 19.98 29.54 -169.99 -5.02 14.96 16 4 H -0.27 -5.96 7.11 56.52 0.40 -5.56 16 5 H -0.28 -6.29 7.11 56.52 0.40 -5.89 16 6 H -0.28 -6.21 7.11 56.52 0.40 -5.81 16 7 C -0.54 -13.73 8.25 -34.44 -0.28 -14.02 16 8 H 0.07 1.66 7.77 -52.49 -0.41 1.26 16 9 C 0.25 6.15 0.88 -89.63 -0.08 6.07 16 10 O -0.58 -15.29 13.16 -35.23 -0.46 -15.75 16 11 C -0.14 -2.94 5.65 -24.89 -0.14 -3.08 16 12 C 0.12 2.30 6.90 -3.06 -0.02 2.28 16 13 N -1.00 -19.46 3.62 -111.42 -0.40 -19.87 16 14 S 2.62 47.29 5.63 -107.50 -0.61 46.69 16 15 O -0.95 -18.95 17.60 -57.54 -1.01 -19.96 16 16 O -0.94 -19.45 17.28 -57.54 -0.99 -20.45 16 17 C -0.60 -8.10 5.95 36.01 0.21 -7.88 16 18 C -0.16 -2.09 5.15 -104.49 -0.54 -2.63 16 19 C 0.14 1.69 7.24 -39.43 -0.29 1.40 16 20 F -0.12 -1.53 16.47 2.25 0.04 -1.49 16 21 C -0.16 -1.37 10.03 -39.50 -0.40 -1.77 16 22 C -0.06 -0.38 10.04 -39.60 -0.40 -0.77 16 23 C -0.16 -1.39 10.03 -39.51 -0.40 -1.78 16 24 C 0.14 1.73 7.24 -39.43 -0.29 1.44 16 25 F -0.12 -1.56 16.48 2.25 0.04 -1.53 16 26 C 0.13 2.69 6.25 -2.53 -0.02 2.67 16 27 H 0.27 6.61 8.31 -40.82 -0.34 6.27 16 28 H 0.38 10.12 7.00 45.56 0.32 10.44 16 29 H 0.07 1.42 8.03 -51.93 -0.42 1.00 16 30 H 0.08 1.87 7.85 -51.93 -0.41 1.46 16 31 H 0.06 1.24 8.14 -51.93 -0.42 0.82 16 32 H 0.05 0.76 8.14 -51.93 -0.42 0.34 16 33 H 0.15 1.77 7.64 -51.93 -0.40 1.37 16 34 H 0.15 1.70 7.63 -51.92 -0.40 1.30 16 35 H 0.15 0.85 8.06 -52.49 -0.42 0.42 16 36 H 0.15 0.45 8.06 -52.48 -0.42 0.03 16 37 H 0.15 0.88 8.06 -52.49 -0.42 0.45 16 38 H 0.08 1.74 7.67 -51.93 -0.40 1.34 16 39 H 0.07 1.30 8.01 -51.93 -0.42 0.88 16 LS Contribution 351.18 15.07 5.29 5.29 Total: -1.00 -31.77 351.18 -9.02 -40.80 By element: Atomic # 1 Polarization: 13.92 SS G_CDS: -3.77 Total: 10.15 kcal Atomic # 6 Polarization: -13.62 SS G_CDS: -2.72 Total: -16.34 kcal Atomic # 7 Polarization: -42.57 SS G_CDS: 0.20 Total: -42.37 kcal Atomic # 8 Polarization: -53.68 SS G_CDS: -2.47 Total: -56.15 kcal Atomic # 9 Polarization: -3.10 SS G_CDS: 0.07 Total: -3.02 kcal Atomic # 14 Polarization: 19.98 SS G_CDS: -5.02 Total: 14.96 kcal Atomic # 16 Polarization: 47.29 SS G_CDS: -0.61 Total: 46.69 kcal Total LS contribution 5.29 Total: 5.29 kcal Total: -31.77 -9.02 -40.80 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000592078707.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -135.193 kcal (2) G-P(sol) polarization free energy of solvation -31.774 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -166.967 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.024 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.798 kcal (6) G-S(sol) free energy of system = (1) + (5) -175.991 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds