Wall clock time and date at job start Wed Apr 1 2020 04:31:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31518 * 1 3 3 Si 1.86795 * 120.00139 * 2 1 4 4 H 1.48508 * 109.47021 * 180.27706 * 3 2 1 5 5 H 1.48500 * 109.47081 * 300.27550 * 3 2 1 6 6 H 1.48501 * 109.47213 * 60.27922 * 3 2 1 7 7 C 1.37885 * 119.99792 * 180.27823 * 2 1 3 8 8 H 1.07999 * 119.99964 * 179.72485 * 7 2 1 9 9 C 1.50700 * 120.00047 * 359.72305 * 7 2 1 10 10 O 1.42894 * 110.88687 * 56.11627 * 9 7 2 11 11 C 1.55160 * 111.00192 * 292.19942 * 9 7 2 12 12 C 1.54326 * 102.94105 * 206.42275 * 11 9 7 13 13 N 1.47021 * 107.27092 * 22.19229 * 12 11 9 14 14 S 1.65602 * 125.65005 * 181.09486 * 13 12 11 15 15 O 1.42101 * 104.27610 * 26.02864 * 14 13 12 16 16 O 1.42098 * 104.27682 * 153.88567 * 14 13 12 17 17 C 1.81396 * 104.44992 * 269.95590 * 14 13 12 18 18 C 1.50703 * 109.47101 * 179.97438 * 17 14 13 19 19 C 1.38415 * 120.02736 * 269.72971 * 18 17 14 20 20 F 1.35098 * 120.01133 * 359.97438 * 19 18 17 21 21 C 1.38479 * 119.97319 * 179.70186 * 19 18 17 22 22 C 1.38211 * 120.02108 * 0.59227 * 21 19 18 23 23 C 1.38206 * 120.05296 * 359.68261 * 22 21 19 24 24 C 1.38417 * 120.01903 * 90.00432 * 18 17 14 25 25 F 1.35096 * 120.01696 * 359.97438 * 24 18 17 26 26 C 1.47430 * 108.70297 * 1.05695 * 13 12 11 27 27 H 0.97000 * 119.99468 * 359.71811 * 1 2 3 28 28 H 0.96707 * 114.00533 * 300.70224 * 10 9 7 29 29 H 1.08996 * 110.72074 * 324.78198 * 11 9 7 30 30 H 1.08999 * 110.72615 * 88.06114 * 11 9 7 31 31 H 1.09003 * 109.88333 * 262.77568 * 12 11 9 32 32 H 1.08999 * 110.01569 * 141.67862 * 12 11 9 33 33 H 1.08994 * 109.47259 * 300.00107 * 17 14 13 34 34 H 1.09002 * 109.47055 * 60.00234 * 17 14 13 35 35 H 1.07996 * 119.98484 * 180.32148 * 21 19 18 36 36 H 1.08005 * 119.97039 * 179.70389 * 22 21 19 37 37 H 1.08001 * 119.98828 * 180.02562 * 23 22 21 38 38 H 1.08998 * 110.36673 * 217.03498 * 26 13 12 39 39 H 1.09002 * 110.36456 * 94.71380 * 26 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7092 1.3462 -0.0068 5 1 1.8854 2.3993 -1.2091 6 1 1.8956 2.3934 1.2159 7 6 2.0046 -1.1941 -0.0058 8 1 3.0845 -1.1941 -0.0103 9 6 1.2510 -2.4992 -0.0058 10 8 0.3471 -2.5656 -1.1105 11 6 0.5046 -2.7104 1.3379 12 6 0.4034 -4.2470 1.4393 13 7 1.4611 -4.8112 0.5882 14 16 1.7460 -6.4242 0.3441 15 8 0.4860 -7.0408 0.5712 16 8 2.3701 -6.4808 -0.9312 17 6 2.9215 -6.8787 1.6487 18 6 3.2617 -8.3421 1.5308 19 6 2.5089 -9.2850 2.2091 20 9 1.4690 -8.8939 2.9777 21 6 2.8186 -10.6299 2.0951 22 6 3.8866 -11.0298 1.3141 23 6 4.6424 -10.0887 0.6410 24 6 4.3307 -8.7437 0.7487 25 9 5.0695 -7.8241 0.0901 26 6 2.2257 -3.7031 -0.0128 27 1 -0.4849 0.8401 0.0041 28 1 -0.3136 -1.8594 -1.1212 29 1 1.0837 -2.3066 2.1684 30 1 -0.4874 -2.2601 1.3031 31 1 -0.5730 -4.5784 1.0858 32 1 0.5505 -4.5633 2.4719 33 1 3.8292 -6.2847 1.5430 34 1 2.4738 -6.6876 2.6240 35 1 2.2282 -11.3662 2.6201 36 1 4.1303 -12.0785 1.2296 37 1 5.4764 -10.4023 0.0307 38 1 2.5144 -3.9515 -1.0341 39 1 3.1075 -3.4809 0.5882 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000592078707.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:31:50 Heat of formation + Delta-G solvation = -199.482625 kcal Electronic energy + Delta-G solvation = -29093.674493 eV Core-core repulsion = 24570.741899 eV Total energy + Delta-G solvation = -4522.932595 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 347.084 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -50.19008 -50.18294 -40.01303 -39.76709 -38.36216 -37.19419 -36.10273 -34.39908 -34.10905 -31.41700 -31.01749 -30.00558 -28.73992 -26.72752 -24.04452 -23.53655 -22.97827 -21.64659 -20.09902 -19.32004 -19.24173 -18.80192 -18.59530 -17.93927 -17.23905 -17.05522 -16.90539 -16.74310 -16.64503 -16.44755 -16.18950 -15.83491 -15.59593 -15.13403 -14.91366 -14.50940 -14.30967 -14.11314 -13.86377 -13.69317 -13.47920 -13.37520 -13.33072 -13.27145 -13.14753 -12.86023 -12.80720 -12.64448 -12.56722 -12.39119 -12.25229 -12.15455 -11.87580 -11.25126 -10.61948 -10.22576 -10.10149 -9.89472 -9.79468 -8.21683 -6.36235 -1.14672 -0.17224 -0.13854 1.43138 1.45781 1.48942 1.57715 2.22582 2.40856 2.61882 2.67414 2.84629 2.97805 3.04135 3.24127 3.41633 3.71160 3.75161 3.94845 4.10057 4.11094 4.19046 4.26867 4.36347 4.62445 4.63165 4.65497 4.69483 4.87623 4.91164 4.96067 5.08996 5.17648 5.19404 5.37513 5.47428 5.55281 5.62693 5.81131 6.10701 6.68894 7.35001 7.48944 8.85268 Molecular weight = 347.08amu Principal moments of inertia in cm(-1) A = 0.022911 B = 0.003086 C = 0.002922 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1221.829933 B = 9072.037692 C = 9580.930190 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.914 5.914 2 C 0.030 3.970 3 Si 0.965 3.035 4 H -0.268 1.268 5 H -0.285 1.285 6 H -0.277 1.277 7 C -0.556 4.556 8 H 0.066 0.934 9 C 0.230 3.770 10 O -0.599 6.599 11 C -0.127 4.127 12 C 0.122 3.878 13 N -1.009 6.009 14 S 2.617 3.383 15 O -0.976 6.976 16 O -0.979 6.979 17 C -0.569 4.569 18 C -0.194 4.194 19 C 0.119 3.881 20 F -0.131 7.131 21 C -0.156 4.156 22 C -0.034 4.034 23 C -0.157 4.157 24 C 0.116 3.884 25 F -0.133 7.133 26 C 0.131 3.869 27 H 0.270 0.730 28 H 0.379 0.621 29 H 0.074 0.926 30 H 0.063 0.937 31 H 0.051 0.949 32 H 0.089 0.911 33 H 0.165 0.835 34 H 0.169 0.831 35 H 0.180 0.820 36 H 0.198 0.802 37 H 0.178 0.822 38 H 0.058 0.942 39 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.883 -21.332 8.305 24.555 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.554 5.554 2 C -0.171 4.171 3 Si 0.791 3.209 4 H -0.192 1.192 5 H -0.211 1.211 6 H -0.203 1.203 7 C -0.594 4.594 8 H 0.084 0.916 9 C 0.189 3.811 10 O -0.409 6.409 11 C -0.167 4.167 12 C -0.003 4.003 13 N -0.847 5.847 14 S 2.716 3.284 15 O -0.966 6.966 16 O -0.970 6.970 17 C -0.698 4.698 18 C -0.198 4.198 19 C 0.098 3.902 20 F -0.110 7.110 21 C -0.174 4.174 22 C -0.052 4.052 23 C -0.175 4.175 24 C 0.096 3.904 25 F -0.111 7.111 26 C 0.006 3.994 27 H 0.080 0.920 28 H 0.230 0.770 29 H 0.093 0.907 30 H 0.082 0.918 31 H 0.070 0.930 32 H 0.107 0.893 33 H 0.183 0.817 34 H 0.187 0.813 35 H 0.197 0.803 36 H 0.215 0.785 37 H 0.195 0.805 38 H 0.077 0.923 39 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges 8.672 -22.271 7.462 25.038 hybrid contribution -0.010 2.440 0.493 2.489 sum 8.662 -19.831 7.956 23.057 Atomic orbital electron populations 1.69668 1.06967 1.28286 1.50478 1.25703 0.95802 1.02362 0.93188 0.85406 0.79002 0.79025 0.77508 1.19218 1.21074 1.20256 1.21811 0.93953 0.91341 1.52333 0.91629 1.19908 0.86495 0.91328 0.83353 1.86106 1.48716 1.55611 1.50423 1.23022 1.01538 0.92039 1.00065 1.21839 0.89430 0.95308 0.93739 1.58376 1.43314 1.21852 1.61192 1.04741 0.75561 0.71863 0.76258 1.93526 1.40295 1.75696 1.87112 1.93536 1.79177 1.85658 1.38636 1.29391 1.19027 1.00575 1.20854 1.19176 1.01164 0.93325 1.06112 1.17650 0.86152 0.93779 0.92594 1.91546 1.55109 1.91877 1.72423 1.21751 1.00606 0.92758 1.02329 1.21574 0.90662 1.02191 0.90808 1.21747 1.03748 0.89093 1.02942 1.17703 0.90500 0.88343 0.93885 1.91552 1.74939 1.66206 1.78437 1.22132 0.94585 0.85385 0.97315 0.92011 0.76985 0.90737 0.91781 0.93030 0.89285 0.81734 0.81337 0.80306 0.78479 0.80466 0.92319 0.88863 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -47.93 10.81 21.45 0.23 -47.70 16 2 C 0.03 1.53 5.31 84.66 0.45 1.98 16 3 Si 0.96 41.08 29.54 68.60 2.03 43.11 16 4 H -0.27 -11.15 7.11 99.48 0.71 -10.44 16 5 H -0.28 -12.17 7.11 99.48 0.71 -11.47 16 6 H -0.28 -11.46 7.11 99.48 0.71 -10.75 16 7 C -0.56 -28.90 8.25 25.60 0.21 -28.68 16 8 H 0.07 3.32 7.77 -2.91 -0.02 3.30 16 9 C 0.23 11.42 0.88 -10.15 -0.01 11.41 16 10 O -0.60 -32.78 13.16 -148.98 -1.96 -34.74 16 11 C -0.13 -5.56 5.65 31.78 0.18 -5.38 16 12 C 0.12 4.63 6.90 86.73 0.60 5.23 16 13 N -1.01 -39.60 3.62 -506.42 -1.83 -41.43 16 14 S 2.62 95.55 5.63 -56.49 -0.32 95.23 16 15 O -0.98 -39.75 17.60 -127.65 -2.25 -41.99 16 16 O -0.98 -41.87 17.28 -127.65 -2.21 -44.08 16 17 C -0.57 -14.75 5.95 71.24 0.42 -14.32 16 18 C -0.19 -4.75 5.15 -19.78 -0.10 -4.86 16 19 C 0.12 2.57 7.24 22.37 0.16 2.73 16 20 F -0.13 -3.23 16.47 44.97 0.74 -2.49 16 21 C -0.16 -2.01 10.03 22.32 0.22 -1.79 16 22 C -0.03 -0.29 10.04 22.26 0.22 -0.07 16 23 C -0.16 -2.11 10.03 22.32 0.22 -1.89 16 24 C 0.12 2.61 7.24 22.37 0.16 2.77 16 25 F -0.13 -3.51 16.48 44.97 0.74 -2.76 16 26 C 0.13 5.68 6.25 86.85 0.54 6.22 16 27 H 0.27 13.47 8.31 -92.71 -0.77 12.70 16 28 H 0.38 20.93 7.00 -74.05 -0.52 20.41 16 29 H 0.07 3.10 8.03 -2.39 -0.02 3.08 16 30 H 0.06 3.00 7.85 -2.39 -0.02 2.98 16 31 H 0.05 2.06 8.14 -2.39 -0.02 2.04 16 32 H 0.09 2.65 8.14 -2.39 -0.02 2.63 16 33 H 0.16 3.72 7.64 -2.39 -0.02 3.70 16 34 H 0.17 3.59 7.63 -2.39 -0.02 3.57 16 35 H 0.18 1.19 8.06 -2.91 -0.02 1.16 16 36 H 0.20 -0.17 8.06 -2.91 -0.02 -0.20 16 37 H 0.18 1.33 8.06 -2.91 -0.02 1.31 16 38 H 0.06 2.73 7.67 -2.39 -0.02 2.71 16 39 H 0.09 3.52 8.01 -2.39 -0.02 3.50 16 Total: -1.00 -72.32 351.18 -0.95 -73.27 By element: Atomic # 1 Polarization: 29.65 SS G_CDS: 0.59 Total: 30.24 kcal Atomic # 6 Polarization: -29.93 SS G_CDS: 3.29 Total: -26.64 kcal Atomic # 7 Polarization: -87.53 SS G_CDS: -1.60 Total: -89.13 kcal Atomic # 8 Polarization: -114.40 SS G_CDS: -6.41 Total: -120.82 kcal Atomic # 9 Polarization: -6.74 SS G_CDS: 1.48 Total: -5.26 kcal Atomic # 14 Polarization: 41.08 SS G_CDS: 2.03 Total: 43.11 kcal Atomic # 16 Polarization: 95.55 SS G_CDS: -0.32 Total: 95.23 kcal Total: -72.32 -0.95 -73.27 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000592078707.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -126.217 kcal (2) G-P(sol) polarization free energy of solvation -72.318 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -198.535 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.948 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.266 kcal (6) G-S(sol) free energy of system = (1) + (5) -199.483 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds