Wall clock time and date at job start Wed Apr 1 2020 04:48:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.33605 * 124.42553 * 2 1 4 4 C 1.38030 * 115.08598 * 179.97438 * 3 2 1 5 5 O 1.35783 * 123.47022 * 179.97438 * 4 3 2 6 6 C 1.42900 * 116.99906 * 0.02736 * 5 4 3 7 7 F 1.39899 * 109.47140 * 299.99567 * 6 5 4 8 8 F 1.39889 * 109.47212 * 60.00336 * 6 5 4 9 9 C 1.37272 * 113.05411 * 0.02562 * 4 3 2 10 10 C 1.41721 * 125.47240 * 179.97438 * 9 4 3 11 11 O 1.21776 * 120.00033 * 5.61237 * 10 9 4 12 12 N 1.34776 * 119.99740 * 185.61992 * 10 9 4 13 13 C 1.47470 * 125.62529 * 175.20851 * 12 10 9 14 14 C 1.54910 * 104.81020 * 204.04271 * 13 12 10 15 15 C 1.55151 * 101.61739 * 323.04671 * 14 13 12 16 16 O 1.42901 * 110.71917 * 277.11473 * 15 14 13 17 17 C 1.50710 * 110.72042 * 154.02138 * 15 14 13 18 18 H 1.07994 * 119.99776 * 359.97438 * 17 15 14 19 19 C 1.37878 * 119.99554 * 179.97438 * 17 15 14 20 20 N 1.31505 * 120.00237 * 359.97438 * 19 17 15 21 21 Si 1.86797 * 119.99488 * 179.97438 * 19 17 15 22 22 H 1.48502 * 109.47060 * 59.99919 * 21 19 17 23 23 H 1.48498 * 109.47275 * 179.97438 * 21 19 17 24 24 H 1.48502 * 109.47471 * 300.00117 * 21 19 17 25 25 C 1.47019 * 125.65137 * 355.18059 * 12 10 9 26 26 S 1.70579 * 124.42436 * 180.30825 * 2 1 3 27 27 H 1.08999 * 109.46899 * 90.00416 * 1 2 3 28 28 H 1.09003 * 109.46921 * 209.99655 * 1 2 3 29 29 H 1.08992 * 109.47081 * 330.00141 * 1 2 3 30 30 H 1.07999 * 122.45986 * 359.97438 * 3 2 1 31 31 H 1.09001 * 109.46585 * 179.97438 * 6 5 4 32 32 H 1.08999 * 110.35102 * 85.22854 * 13 12 10 33 33 H 1.08998 * 110.40842 * 322.89311 * 13 12 10 34 34 H 1.08998 * 111.00975 * 204.94728 * 14 13 12 35 35 H 1.09005 * 111.00083 * 81.14006 * 14 13 12 36 36 H 0.96703 * 114.00156 * 179.97438 * 16 15 14 37 37 H 0.97007 * 120.00051 * 180.02562 * 20 19 17 38 38 H 1.08998 * 109.88379 * 59.58338 * 25 12 10 39 39 H 1.08999 * 110.01079 * 298.48822 * 25 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2623 1.1021 0.0000 4 6 3.6243 0.8781 0.0006 5 8 4.5471 1.8742 0.0001 6 6 4.0539 3.2154 -0.0003 7 9 3.2740 3.4250 -1.1427 8 9 3.2741 3.4259 1.1419 9 6 3.9498 -0.4555 0.0005 10 6 5.2660 -0.9809 0.0004 11 8 6.2206 -0.2318 0.1036 12 7 5.4613 -2.3095 -0.1140 13 6 6.7705 -2.9786 -0.2281 14 6 6.4673 -4.3242 -0.9333 15 6 5.0964 -4.7007 -0.3120 16 8 5.2733 -5.3356 0.9559 17 6 4.3134 -5.5876 -1.2456 18 1 4.7324 -5.8705 -2.1999 19 6 3.0621 -6.0376 -0.8813 20 7 2.5521 -5.6935 0.2809 21 14 2.0913 -7.1363 -2.0388 22 1 2.8583 -8.3808 -2.2998 23 1 0.7872 -7.4803 -1.4174 24 1 1.8568 -6.4217 -3.3194 25 6 4.4047 -3.3313 -0.1452 26 16 2.4713 -1.4070 -0.0076 27 1 -0.3633 -0.0001 -1.0277 28 1 -0.3633 -0.8900 0.5138 29 1 -0.3633 0.8899 0.5138 30 1 1.8384 2.0954 -0.0004 31 1 4.8930 3.9110 -0.0002 32 1 7.1932 -3.1556 0.7609 33 1 7.4524 -2.3793 -0.8312 34 1 7.2239 -5.0709 -0.6923 35 1 6.3838 -4.1898 -2.0118 36 1 4.4460 -5.5908 1.3869 37 1 1.6719 -6.0105 0.5374 38 1 3.7368 -3.1484 -0.9869 39 1 3.8399 -3.3124 0.7869 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000592844414.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:48:54 Heat of formation + Delta-G solvation = -193.443803 kcal Electronic energy + Delta-G solvation = -29274.551492 eV Core-core repulsion = 24751.880760 eV Total energy + Delta-G solvation = -4522.670732 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 347.084 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -49.38514 -47.42072 -40.03315 -39.05863 -37.16450 -36.30712 -34.22674 -32.28509 -31.91409 -30.29225 -28.13320 -27.32455 -26.29737 -25.14032 -23.24370 -22.60077 -20.69905 -19.67149 -19.44668 -18.36099 -17.99548 -17.63272 -17.24006 -16.92050 -15.83018 -15.46964 -15.33048 -15.05162 -14.68662 -14.45412 -14.14703 -14.06310 -13.96886 -13.77944 -13.49155 -13.35095 -13.07417 -12.99711 -12.94185 -12.53102 -12.25643 -12.01485 -11.75640 -11.70230 -11.62855 -11.36030 -11.12302 -10.93323 -10.65043 -10.59851 -10.40392 -10.22901 -9.54322 -9.38092 -8.76331 -8.55939 -8.40039 -8.21288 -7.73059 -6.40397 -4.48780 0.65808 1.61901 1.98486 2.38430 2.81152 3.15100 3.20784 3.23895 3.40343 3.64041 3.69885 4.17977 4.20155 4.55082 4.62965 4.86828 5.06467 5.19354 5.32284 5.44175 5.45358 5.62578 5.73195 5.83505 5.87737 5.93874 5.97795 6.16007 6.22227 6.39237 6.57417 6.72794 6.82833 6.94258 7.00697 7.23192 7.63039 7.87436 8.16931 8.54059 8.70270 9.20731 9.35162 10.67131 Molecular weight = 347.08amu Principal moments of inertia in cm(-1) A = 0.014518 B = 0.004039 C = 0.003380 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1928.128734 B = 6930.108191 C = 8282.587042 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.085 4.085 2 C -0.206 4.206 3 C -0.215 4.215 4 C 0.159 3.841 5 O -0.278 6.278 6 C 0.407 3.593 7 F -0.201 7.201 8 F -0.201 7.201 9 C -0.304 4.304 10 C 0.600 3.400 11 O -0.546 6.546 12 N -0.612 5.612 13 C 0.114 3.886 14 C -0.119 4.119 15 C 0.257 3.743 16 O -0.582 6.582 17 C -0.537 4.537 18 H 0.068 0.932 19 C 0.073 3.927 20 N -0.898 5.898 21 Si 0.902 3.098 22 H -0.274 1.274 23 H -0.284 1.284 24 H -0.274 1.274 25 C 0.076 3.924 26 S 0.317 5.683 27 H 0.079 0.921 28 H 0.075 0.925 29 H 0.075 0.925 30 H 0.144 0.856 31 H 0.181 0.819 32 H 0.065 0.935 33 H 0.066 0.934 34 H 0.079 0.921 35 H 0.077 0.923 36 H 0.386 0.614 37 H 0.272 0.728 38 H 0.075 0.925 39 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.438 12.808 -0.321 13.265 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.326 4.326 3 C -0.246 4.246 4 C 0.100 3.900 5 O -0.195 6.195 6 C 0.316 3.684 7 F -0.183 7.183 8 F -0.183 7.183 9 C -0.424 4.424 10 C 0.390 3.610 11 O -0.428 6.428 12 N -0.345 5.345 13 C -0.009 4.009 14 C -0.157 4.157 15 C 0.216 3.784 16 O -0.392 6.392 17 C -0.575 4.575 18 H 0.086 0.914 19 C -0.130 4.130 20 N -0.537 5.537 21 Si 0.729 3.271 22 H -0.199 1.199 23 H -0.210 1.210 24 H -0.199 1.199 25 C -0.048 4.048 26 S 0.586 5.414 27 H 0.097 0.903 28 H 0.094 0.906 29 H 0.094 0.906 30 H 0.161 0.839 31 H 0.197 0.803 32 H 0.083 0.917 33 H 0.085 0.915 34 H 0.098 0.902 35 H 0.095 0.905 36 H 0.238 0.762 37 H 0.083 0.917 38 H 0.093 0.907 39 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges -2.668 11.798 -0.283 12.099 hybrid contribution -1.413 1.196 -0.418 1.897 sum -4.081 12.993 -0.701 13.637 Atomic orbital electron populations 1.20393 0.87337 1.03463 1.03124 1.24632 1.02501 1.00802 1.04689 1.19914 0.91092 1.00897 1.12740 1.17908 0.87651 0.86759 0.97706 1.86836 1.32477 1.12505 1.87635 1.23515 0.87055 0.86078 0.71725 1.93091 1.78387 1.94712 1.52146 1.93088 1.78385 1.94694 1.52142 1.22961 0.99573 0.94768 1.25101 1.15193 0.86934 0.81133 0.77728 1.90795 1.42111 1.57750 1.52135 1.48618 1.09934 1.04969 1.71010 1.22183 0.84892 0.93398 1.00379 1.22801 0.98849 0.94718 0.99361 1.19362 0.89630 0.86496 0.82931 1.86122 1.37612 1.80420 1.35097 1.21536 1.01348 1.30862 1.03786 0.91351 1.25034 0.97111 0.95401 0.95440 1.69550 1.18515 1.45129 1.20536 0.86484 0.78935 0.80938 0.80774 1.19910 1.20980 1.19946 1.23280 0.89864 0.90077 1.01590 1.84676 0.90078 1.01373 1.65271 0.90254 0.90642 0.90644 0.83876 0.80277 0.91714 0.91531 0.90247 0.90464 0.76215 0.91745 0.90744 0.90829 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -0.91 10.31 36.01 0.37 -0.54 16 2 C -0.21 -2.98 6.26 -35.93 -0.23 -3.20 16 3 C -0.21 -3.25 8.25 -41.28 -0.34 -3.60 16 4 C 0.16 2.80 6.46 -40.01 -0.26 2.54 16 5 O -0.28 -4.59 9.31 -36.41 -0.34 -4.93 16 6 C 0.41 4.61 5.98 101.05 0.60 5.22 16 7 F -0.20 -2.43 15.84 2.25 0.04 -2.40 16 8 F -0.20 -2.44 15.84 2.25 0.04 -2.40 16 9 C -0.30 -5.88 6.22 -38.60 -0.24 -6.12 16 10 C 0.60 13.01 7.63 -14.93 -0.11 12.89 16 11 O -0.55 -12.85 16.15 -12.23 -0.20 -13.05 16 12 N -0.61 -13.02 3.33 -173.85 -0.58 -13.60 16 13 C 0.11 2.25 6.88 -2.50 -0.02 2.24 16 14 C -0.12 -2.40 6.22 -24.59 -0.15 -2.55 16 15 C 0.26 5.90 0.86 -89.94 -0.08 5.82 16 16 O -0.58 -14.10 13.09 -35.23 -0.46 -14.56 16 17 C -0.54 -13.09 8.11 -34.44 -0.28 -13.37 16 18 H 0.07 1.65 7.76 -52.49 -0.41 1.25 16 19 C 0.07 1.74 5.28 -17.82 -0.09 1.65 16 20 N -0.90 -21.39 10.98 55.43 0.61 -20.78 16 21 Si 0.90 18.96 29.54 -169.99 -5.02 13.94 16 22 H -0.27 -5.84 7.11 56.52 0.40 -5.44 16 23 H -0.28 -5.94 7.11 56.52 0.40 -5.53 16 24 H -0.27 -5.75 7.11 56.52 0.40 -5.35 16 25 C 0.08 1.66 3.82 -3.07 -0.01 1.64 16 26 S 0.32 5.37 18.16 -107.50 -1.95 3.42 16 27 H 0.08 0.76 8.14 -51.93 -0.42 0.34 16 28 H 0.07 0.76 8.14 -51.93 -0.42 0.33 16 29 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 30 H 0.14 1.94 5.88 -52.49 -0.31 1.63 16 31 H 0.18 1.14 8.14 -51.93 -0.42 0.72 16 32 H 0.06 1.28 8.14 -51.93 -0.42 0.86 16 33 H 0.07 1.24 8.09 -51.93 -0.42 0.82 16 34 H 0.08 1.51 8.14 -51.93 -0.42 1.09 16 35 H 0.08 1.48 8.03 -51.93 -0.42 1.06 16 36 H 0.39 9.44 6.98 45.56 0.32 9.75 16 37 H 0.27 6.23 8.31 -40.82 -0.34 5.89 16 38 H 0.07 1.65 6.28 -50.93 -0.32 1.33 16 39 H 0.07 1.66 7.01 -51.93 -0.36 1.29 16 LS Contribution 343.02 15.07 5.17 5.17 Total: -1.00 -29.13 343.02 -7.13 -36.26 By element: Atomic # 1 Polarization: 13.90 SS G_CDS: -3.59 Total: 10.31 kcal Atomic # 6 Polarization: 3.46 SS G_CDS: -0.84 Total: 2.62 kcal Atomic # 7 Polarization: -34.41 SS G_CDS: 0.03 Total: -34.38 kcal Atomic # 8 Polarization: -31.55 SS G_CDS: -1.00 Total: -32.54 kcal Atomic # 9 Polarization: -4.88 SS G_CDS: 0.07 Total: -4.80 kcal Atomic # 14 Polarization: 18.96 SS G_CDS: -5.02 Total: 13.94 kcal Atomic # 16 Polarization: 5.37 SS G_CDS: -1.95 Total: 3.42 kcal Total LS contribution 5.17 Total: 5.17 kcal Total: -29.13 -7.13 -36.26 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000592844414.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -157.183 kcal (2) G-P(sol) polarization free energy of solvation -29.135 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -186.318 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.126 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.261 kcal (6) G-S(sol) free energy of system = (1) + (5) -193.444 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds