Wall clock time and date at job start Wed Apr 1 2020 04:48:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.33605 * 124.42553 * 2 1 4 4 C 1.38030 * 115.08598 * 179.97438 * 3 2 1 5 5 O 1.35783 * 123.47022 * 179.97438 * 4 3 2 6 6 C 1.42900 * 116.99906 * 0.02736 * 5 4 3 7 7 F 1.39899 * 109.47140 * 299.99567 * 6 5 4 8 8 F 1.39889 * 109.47212 * 60.00336 * 6 5 4 9 9 C 1.37272 * 113.05411 * 0.02562 * 4 3 2 10 10 C 1.41721 * 125.47240 * 179.97438 * 9 4 3 11 11 O 1.21776 * 120.00033 * 5.61237 * 10 9 4 12 12 N 1.34776 * 119.99740 * 185.61992 * 10 9 4 13 13 C 1.47470 * 125.62529 * 175.20851 * 12 10 9 14 14 C 1.54910 * 104.81020 * 204.04271 * 13 12 10 15 15 C 1.55151 * 101.61739 * 323.04671 * 14 13 12 16 16 O 1.42901 * 110.71917 * 277.11473 * 15 14 13 17 17 C 1.50710 * 110.72042 * 154.02138 * 15 14 13 18 18 H 1.07994 * 119.99776 * 359.97438 * 17 15 14 19 19 C 1.37878 * 119.99554 * 179.97438 * 17 15 14 20 20 N 1.31505 * 120.00237 * 359.97438 * 19 17 15 21 21 Si 1.86797 * 119.99488 * 179.97438 * 19 17 15 22 22 H 1.48502 * 109.47060 * 59.99919 * 21 19 17 23 23 H 1.48498 * 109.47275 * 179.97438 * 21 19 17 24 24 H 1.48502 * 109.47471 * 300.00117 * 21 19 17 25 25 C 1.47019 * 125.65137 * 355.18059 * 12 10 9 26 26 S 1.70579 * 124.42436 * 180.30825 * 2 1 3 27 27 H 1.08999 * 109.46899 * 90.00416 * 1 2 3 28 28 H 1.09003 * 109.46921 * 209.99655 * 1 2 3 29 29 H 1.08992 * 109.47081 * 330.00141 * 1 2 3 30 30 H 1.07999 * 122.45986 * 359.97438 * 3 2 1 31 31 H 1.09001 * 109.46585 * 179.97438 * 6 5 4 32 32 H 1.08999 * 110.35102 * 85.22854 * 13 12 10 33 33 H 1.08998 * 110.40842 * 322.89311 * 13 12 10 34 34 H 1.08998 * 111.00975 * 204.94728 * 14 13 12 35 35 H 1.09005 * 111.00083 * 81.14006 * 14 13 12 36 36 H 0.96703 * 114.00156 * 179.97438 * 16 15 14 37 37 H 0.97007 * 120.00051 * 180.02562 * 20 19 17 38 38 H 1.08998 * 109.88379 * 59.58338 * 25 12 10 39 39 H 1.08999 * 110.01079 * 298.48822 * 25 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2623 1.1021 0.0000 4 6 3.6243 0.8781 0.0006 5 8 4.5471 1.8742 0.0001 6 6 4.0539 3.2154 -0.0003 7 9 3.2740 3.4250 -1.1427 8 9 3.2741 3.4259 1.1419 9 6 3.9498 -0.4555 0.0005 10 6 5.2660 -0.9809 0.0004 11 8 6.2206 -0.2318 0.1036 12 7 5.4613 -2.3095 -0.1140 13 6 6.7705 -2.9786 -0.2281 14 6 6.4673 -4.3242 -0.9333 15 6 5.0964 -4.7007 -0.3120 16 8 5.2733 -5.3356 0.9559 17 6 4.3134 -5.5876 -1.2456 18 1 4.7324 -5.8705 -2.1999 19 6 3.0621 -6.0376 -0.8813 20 7 2.5521 -5.6935 0.2809 21 14 2.0913 -7.1363 -2.0388 22 1 2.8583 -8.3808 -2.2998 23 1 0.7872 -7.4803 -1.4174 24 1 1.8568 -6.4217 -3.3194 25 6 4.4047 -3.3313 -0.1452 26 16 2.4713 -1.4070 -0.0076 27 1 -0.3633 -0.0001 -1.0277 28 1 -0.3633 -0.8900 0.5138 29 1 -0.3633 0.8899 0.5138 30 1 1.8384 2.0954 -0.0004 31 1 4.8930 3.9110 -0.0002 32 1 7.1932 -3.1556 0.7609 33 1 7.4524 -2.3793 -0.8312 34 1 7.2239 -5.0709 -0.6923 35 1 6.3838 -4.1898 -2.0118 36 1 4.4460 -5.5908 1.3869 37 1 1.6719 -6.0105 0.5374 38 1 3.7368 -3.1484 -0.9869 39 1 3.8399 -3.3124 0.7869 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000592844414.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:48:54 Heat of formation + Delta-G solvation = -212.099626 kcal Electronic energy + Delta-G solvation = -29275.360469 eV Core-core repulsion = 24751.880760 eV Total energy + Delta-G solvation = -4523.479709 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 347.084 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -50.31652 -48.35134 -41.46857 -40.53841 -38.84556 -37.52111 -36.00407 -34.13377 -33.21188 -31.81887 -29.80875 -28.58732 -27.39528 -26.86873 -24.57069 -23.96574 -22.17095 -21.35464 -20.66194 -19.50617 -19.20106 -18.95965 -18.79257 -18.36290 -17.35390 -16.88491 -16.74974 -16.71952 -16.08639 -15.78646 -15.60659 -15.13799 -15.09180 -14.83357 -14.74916 -14.72143 -14.61161 -14.41350 -14.37118 -13.85789 -13.47258 -13.41946 -13.39778 -13.06594 -12.90184 -12.77055 -12.58603 -12.48528 -12.28515 -12.27318 -12.09059 -11.73613 -11.23166 -11.08233 -10.58051 -10.22971 -9.91297 -9.71157 -9.17834 -8.21523 -6.36502 -0.65871 0.31823 0.76061 1.11263 1.48337 1.51270 1.57109 1.75009 2.05810 2.11011 2.43611 2.46740 3.03735 3.33749 3.57389 3.64069 3.68982 3.90445 4.00402 4.03628 4.17551 4.22993 4.31099 4.44978 4.57067 4.66448 4.70130 4.78010 4.89207 4.94447 5.07591 5.10881 5.27429 5.28973 5.47918 5.67250 5.79217 6.05538 6.50841 6.68046 7.05858 7.34421 7.44897 8.84974 Molecular weight = 347.08amu Principal moments of inertia in cm(-1) A = 0.014518 B = 0.004039 C = 0.003380 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1928.128734 B = 6930.108191 C = 8282.587042 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.089 4.089 2 C -0.176 4.176 3 C -0.224 4.224 4 C 0.170 3.830 5 O -0.303 6.303 6 C 0.404 3.596 7 F -0.205 7.205 8 F -0.205 7.205 9 C -0.352 4.352 10 C 0.597 3.403 11 O -0.575 6.575 12 N -0.618 5.618 13 C 0.114 3.886 14 C -0.112 4.112 15 C 0.241 3.759 16 O -0.591 6.591 17 C -0.561 4.561 18 H 0.064 0.936 19 C 0.041 3.959 20 N -0.907 5.907 21 Si 0.955 3.045 22 H -0.277 1.277 23 H -0.280 1.280 24 H -0.272 1.272 25 C 0.095 3.905 26 S 0.290 5.710 27 H 0.098 0.902 28 H 0.083 0.917 29 H 0.098 0.902 30 H 0.164 0.836 31 H 0.233 0.767 32 H 0.062 0.938 33 H 0.078 0.922 34 H 0.088 0.912 35 H 0.085 0.915 36 H 0.381 0.619 37 H 0.275 0.725 38 H 0.068 0.932 39 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.988 14.020 -0.858 14.905 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.296 4.296 3 C -0.255 4.255 4 C 0.109 3.891 5 O -0.220 6.220 6 C 0.315 3.685 7 F -0.187 7.187 8 F -0.187 7.187 9 C -0.471 4.471 10 C 0.389 3.611 11 O -0.459 6.459 12 N -0.351 5.351 13 C -0.008 4.008 14 C -0.150 4.150 15 C 0.200 3.800 16 O -0.400 6.400 17 C -0.599 4.599 18 H 0.083 0.917 19 C -0.161 4.161 20 N -0.546 5.546 21 Si 0.780 3.220 22 H -0.203 1.203 23 H -0.205 1.205 24 H -0.197 1.197 25 C -0.029 4.029 26 S 0.558 5.442 27 H 0.116 0.884 28 H 0.102 0.898 29 H 0.117 0.883 30 H 0.181 0.819 31 H 0.249 0.751 32 H 0.080 0.920 33 H 0.096 0.904 34 H 0.107 0.893 35 H 0.103 0.897 36 H 0.232 0.768 37 H 0.085 0.915 38 H 0.086 0.914 39 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -4.208 13.016 -0.819 13.704 hybrid contribution -1.006 0.941 -0.226 1.396 sum -5.214 13.957 -1.046 14.935 Atomic orbital electron populations 1.20629 0.84251 1.05043 1.04761 1.25051 1.04224 0.99013 1.01362 1.20083 0.90083 1.01996 1.13334 1.18242 0.88783 0.86664 0.95381 1.86823 1.33638 1.14287 1.87218 1.24367 0.88421 0.84571 0.71165 1.93080 1.78705 1.94476 1.52395 1.93077 1.78713 1.94462 1.52423 1.22856 0.99229 0.96029 1.29025 1.15524 0.87732 0.80890 0.76945 1.90748 1.43249 1.58184 1.53753 1.48688 1.10170 1.05050 1.71181 1.22219 0.84763 0.93384 1.00429 1.22779 0.97671 0.94937 0.99622 1.19593 0.91259 0.86773 0.82359 1.86113 1.37419 1.80725 1.35781 1.21720 1.02150 1.31932 1.04057 0.91745 1.25592 0.97649 0.96230 0.96603 1.69611 1.18670 1.45168 1.21152 0.85659 0.77802 0.79210 0.79283 1.20291 1.20461 1.19696 1.22949 0.89631 0.89612 1.00680 1.84644 0.90163 1.02891 1.66470 0.88365 0.89798 0.88301 0.81880 0.75113 0.92009 0.90371 0.89319 0.89687 0.76752 0.91494 0.91368 0.92025 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -1.61 10.31 71.24 0.73 -0.87 16 2 C -0.18 -4.75 6.26 24.64 0.15 -4.59 16 3 C -0.22 -6.39 8.25 21.17 0.17 -6.21 16 4 C 0.17 5.88 6.46 21.99 0.14 6.03 16 5 O -0.30 -9.73 9.31 -74.53 -0.69 -10.42 16 6 C 0.40 8.23 5.98 113.37 0.68 8.91 16 7 F -0.20 -4.47 15.84 44.97 0.71 -3.76 16 8 F -0.20 -4.50 15.84 44.97 0.71 -3.79 16 9 C -0.35 -13.80 6.22 22.90 0.14 -13.66 16 10 C 0.60 26.50 7.63 85.10 0.65 27.15 16 11 O -0.58 -27.65 16.15 12.00 0.19 -27.45 16 12 N -0.62 -26.89 3.33 -822.12 -2.74 -29.62 16 13 C 0.11 4.57 6.88 86.85 0.60 5.17 16 14 C -0.11 -4.52 6.22 31.98 0.20 -4.32 16 15 C 0.24 11.20 0.86 -10.35 -0.01 11.19 16 16 O -0.59 -29.09 13.09 -148.98 -1.95 -31.04 16 17 C -0.56 -27.45 8.11 25.60 0.21 -27.25 16 18 H 0.06 3.13 7.76 -2.91 -0.02 3.10 16 19 C 0.04 1.96 5.28 84.66 0.45 2.40 16 20 N -0.91 -43.20 10.98 21.45 0.24 -42.96 16 21 Si 0.95 38.40 29.54 68.60 2.03 40.42 16 22 H -0.28 -11.27 7.11 99.48 0.71 -10.56 16 23 H -0.28 -10.94 7.11 99.48 0.71 -10.23 16 24 H -0.27 -10.77 7.11 99.48 0.71 -10.06 16 25 C 0.10 4.25 3.82 86.73 0.33 4.58 16 26 S 0.29 9.83 18.16 -56.49 -1.03 8.80 16 27 H 0.10 1.50 8.14 -2.39 -0.02 1.49 16 28 H 0.08 1.43 8.14 -2.39 -0.02 1.41 16 29 H 0.10 1.40 8.14 -2.39 -0.02 1.38 16 30 H 0.16 3.95 5.88 -2.91 -0.02 3.94 16 31 H 0.23 2.17 8.14 -2.39 -0.02 2.15 16 32 H 0.06 2.48 8.14 -2.39 -0.02 2.46 16 33 H 0.08 2.92 8.09 -2.39 -0.02 2.90 16 34 H 0.09 3.36 8.14 -2.39 -0.02 3.34 16 35 H 0.08 3.25 8.03 -2.38 -0.02 3.23 16 36 H 0.38 19.07 6.98 -74.06 -0.52 18.55 16 37 H 0.28 12.47 8.31 -92.70 -0.77 11.70 16 38 H 0.07 3.10 6.28 -3.02 -0.02 3.08 16 39 H 0.06 2.87 7.01 -2.39 -0.02 2.85 16 Total: -1.00 -63.10 343.02 2.53 -60.57 By element: Atomic # 1 Polarization: 30.13 SS G_CDS: 0.60 Total: 30.73 kcal Atomic # 6 Polarization: 4.07 SS G_CDS: 4.45 Total: 8.52 kcal Atomic # 7 Polarization: -70.09 SS G_CDS: -2.50 Total: -72.59 kcal Atomic # 8 Polarization: -66.47 SS G_CDS: -2.45 Total: -68.92 kcal Atomic # 9 Polarization: -8.97 SS G_CDS: 1.42 Total: -7.55 kcal Atomic # 14 Polarization: 38.40 SS G_CDS: 2.03 Total: 40.42 kcal Atomic # 16 Polarization: 9.83 SS G_CDS: -1.03 Total: 8.80 kcal Total: -63.10 2.53 -60.57 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000592844414.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -151.528 kcal (2) G-P(sol) polarization free energy of solvation -63.098 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -214.626 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.527 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.572 kcal (6) G-S(sol) free energy of system = (1) + (5) -212.100 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds