Wall clock time and date at job start Wed Apr 1 2020 04:45:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.42900 * 114.00150 * 2 1 4 4 C 1.52996 * 109.47578 * 179.97438 * 3 2 1 5 5 N 1.46505 * 109.46933 * 64.99566 * 4 3 2 6 6 C 1.46498 * 120.00291 * 275.00251 * 5 4 3 7 7 C 1.50696 * 109.46991 * 274.99864 * 6 5 4 8 8 H 1.08004 * 120.00207 * 0.02562 * 7 6 5 9 9 C 1.37877 * 119.99948 * 180.02562 * 7 6 5 10 10 N 1.31518 * 120.00091 * 180.02562 * 9 7 6 11 11 Si 1.86802 * 119.99879 * 0.02562 * 9 7 6 12 12 H 1.48501 * 109.47060 * 90.00262 * 11 9 7 13 13 H 1.48507 * 109.46819 * 210.00297 * 11 9 7 14 14 H 1.48500 * 109.47005 * 329.99906 * 11 9 7 15 15 S 1.65599 * 119.99304 * 95.00132 * 5 4 3 16 16 O 1.42104 * 106.40015 * 156.45996 * 15 5 4 17 17 O 1.42103 * 106.40833 * 23.54314 * 15 5 4 18 18 C 1.76195 * 107.22001 * 269.99761 * 15 5 4 19 19 C 1.38264 * 119.98781 * 270.02640 * 18 15 5 20 20 C 1.38189 * 120.01199 * 179.97438 * 19 18 15 21 21 C 1.38377 * 119.99104 * 359.97438 * 20 19 18 22 22 Cl 1.73595 * 120.01640 * 180.27805 * 21 20 19 23 23 C 1.38335 * 119.96836 * 0.02562 * 21 20 19 24 24 C 1.50697 * 120.00426 * 180.02562 * 23 21 20 25 25 C 1.38220 * 119.98635 * 90.00691 * 18 15 5 26 26 H 1.09001 * 109.46774 * 180.02562 * 1 2 3 27 27 H 1.09002 * 109.47137 * 299.99680 * 1 2 3 28 28 H 1.08996 * 109.46887 * 60.00241 * 1 2 3 29 29 H 1.09007 * 109.46784 * 59.99499 * 3 2 1 30 30 H 1.09003 * 109.46934 * 300.00196 * 3 2 1 31 31 H 1.08996 * 109.47099 * 305.00122 * 4 3 2 32 32 H 1.08999 * 109.47235 * 184.99686 * 4 3 2 33 33 H 1.08998 * 109.47067 * 34.99798 * 6 5 4 34 34 H 1.09000 * 109.47025 * 155.00239 * 6 5 4 35 35 H 0.96998 * 119.99956 * 179.97438 * 10 9 7 36 36 H 1.07997 * 119.99869 * 359.97438 * 19 18 15 37 37 H 1.08001 * 120.00973 * 180.02562 * 20 19 18 38 38 H 1.08997 * 109.47389 * 89.99590 * 24 23 21 39 39 H 1.09002 * 109.47291 * 210.00065 * 24 23 21 40 40 H 1.09002 * 109.47234 * 329.99582 * 24 23 21 41 41 H 1.08002 * 119.99090 * 0.04050 * 25 18 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 6 3.5354 1.1847 0.0006 5 7 3.9767 0.5639 -1.2509 6 6 4.0015 -0.8955 -1.3758 7 6 5.3000 -1.4248 -0.8239 8 1 6.0334 -0.7424 -0.4201 9 6 5.5520 -2.7803 -0.8345 10 7 6.6851 -3.2424 -0.3524 11 14 4.2840 -3.9606 -1.5335 12 1 4.5350 -4.1544 -2.9843 13 1 4.3856 -5.2670 -0.8346 14 1 2.9235 -3.3987 -1.3372 15 16 4.4473 1.5121 -2.5244 16 8 5.3032 0.7104 -3.3268 17 8 4.8442 2.7594 -1.9710 18 6 3.0119 1.8325 -3.4946 19 6 2.6686 0.9761 -4.5244 20 6 1.5426 1.2266 -5.2854 21 6 0.7582 2.3344 -5.0163 22 17 -0.6604 2.6457 -5.9671 23 6 1.1022 3.1907 -3.9858 24 6 0.2483 4.3971 -3.6916 25 6 2.2292 2.9395 -3.2257 26 1 -0.3633 -1.0277 0.0005 27 1 -0.3633 0.5138 0.8900 28 1 -0.3633 0.5138 -0.8900 29 1 1.6885 1.8464 0.8900 30 1 1.6886 1.8464 -0.8900 31 1 3.8508 0.5686 0.8427 32 1 3.9784 2.1766 0.0902 33 1 3.1685 -1.3222 -0.8171 34 1 3.9138 -1.1718 -2.4265 35 1 6.8622 -4.1960 -0.3595 36 1 3.2805 0.1113 -4.7342 37 1 1.2743 0.5574 -6.0895 38 1 -0.5219 4.1294 -2.9682 39 1 0.8713 5.1920 -3.2817 40 1 -0.2222 4.7424 -4.6122 41 1 2.4980 3.6082 -2.4213 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000594448794.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:45:58 Heat of formation + Delta-G solvation = -93.951796 kcal Electronic energy + Delta-G solvation = -27429.673099 eV Core-core repulsion = 23463.113345 eV Total energy + Delta-G solvation = -3966.559754 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 347.079 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -39.66797 -37.95669 -36.82508 -36.80769 -35.56351 -35.31724 -33.17397 -32.45668 -31.23006 -29.86757 -27.29192 -27.23913 -25.88913 -23.44398 -22.67246 -22.23813 -21.56097 -18.46204 -17.66690 -17.19682 -16.91155 -16.39880 -16.29945 -15.97105 -15.78765 -15.13210 -14.76067 -14.55744 -14.48907 -14.14997 -13.74674 -13.49671 -13.00118 -12.81298 -12.57573 -12.56376 -12.47651 -12.33535 -12.15086 -11.91897 -11.87497 -11.80908 -11.59688 -11.41190 -11.22725 -11.07247 -10.94792 -10.67993 -10.64425 -10.34529 -10.15694 -9.56030 -9.50344 -9.24881 -9.05171 -8.52916 -8.13615 -6.02828 -4.01131 0.42851 0.86265 0.98848 1.73165 3.04573 3.32153 3.38558 3.40716 3.57082 3.96821 4.19269 4.31454 4.43743 4.44600 4.71917 4.95092 5.02095 5.12655 5.21011 5.27226 5.29036 5.30275 5.31516 5.40632 5.46690 5.48440 5.54650 5.61213 5.69820 5.73831 5.83130 5.91729 5.94155 6.15860 6.40113 6.47119 6.88876 7.15724 7.30166 7.41913 7.65305 8.53726 9.01415 9.56889 11.10708 Molecular weight = 347.08amu Principal moments of inertia in cm(-1) A = 0.012250 B = 0.004191 C = 0.004179 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2285.107977 B = 6679.745097 C = 6697.837276 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 O -0.369 6.369 3 C 0.039 3.961 4 C 0.120 3.880 5 N -0.966 5.966 6 C 0.226 3.774 7 C -0.529 4.529 8 H 0.078 0.922 9 C 0.075 3.925 10 N -0.897 5.897 11 Si 0.866 3.134 12 H -0.274 1.274 13 H -0.285 1.285 14 H -0.260 1.260 15 S 2.681 3.319 16 O -0.934 6.934 17 O -0.970 6.970 18 C -0.666 4.666 19 C -0.010 4.010 20 C -0.128 4.128 21 C 0.008 3.992 22 Cl -0.064 7.064 23 C -0.102 4.102 24 C -0.119 4.119 25 C -0.014 4.014 26 H 0.082 0.918 27 H 0.036 0.964 28 H 0.034 0.966 29 H 0.056 0.944 30 H 0.042 0.958 31 H 0.103 0.897 32 H 0.099 0.901 33 H 0.054 0.946 34 H 0.025 0.975 35 H 0.264 0.736 36 H 0.152 0.848 37 H 0.142 0.858 38 H 0.076 0.924 39 H 0.075 0.925 40 H 0.074 0.926 41 H 0.147 0.853 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.069 13.199 -5.583 22.288 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.288 6.288 3 C -0.040 4.040 4 C -0.006 4.006 5 N -0.804 5.804 6 C 0.103 3.897 7 C -0.568 4.568 8 H 0.096 0.904 9 C -0.128 4.128 10 N -0.535 5.535 11 Si 0.693 3.307 12 H -0.199 1.199 13 H -0.211 1.211 14 H -0.185 1.185 15 S 2.768 3.232 16 O -0.924 6.924 17 O -0.960 6.960 18 C -0.749 4.749 19 C -0.029 4.029 20 C -0.147 4.147 21 C -0.019 4.019 22 Cl -0.035 7.035 23 C -0.103 4.103 24 C -0.175 4.175 25 C -0.033 4.033 26 H 0.101 0.899 27 H 0.055 0.945 28 H 0.053 0.947 29 H 0.074 0.926 30 H 0.060 0.940 31 H 0.121 0.879 32 H 0.117 0.883 33 H 0.072 0.928 34 H 0.043 0.957 35 H 0.074 0.926 36 H 0.169 0.831 37 H 0.160 0.840 38 H 0.095 0.905 39 H 0.094 0.906 40 H 0.093 0.907 41 H 0.164 0.836 Dipole moment (debyes) X Y Z Total from point charges -16.179 13.181 -5.828 21.667 hybrid contribution -1.753 -0.626 -0.740 2.002 sum -17.932 12.555 -6.568 22.854 Atomic orbital electron populations 1.22709 0.82298 1.02466 0.99219 1.88090 1.18470 1.27072 1.95146 1.23231 0.95669 0.85363 0.99733 1.21393 0.90622 0.99745 0.88887 1.57110 1.81790 1.17936 1.23593 1.19587 0.99174 0.73842 0.97071 1.21370 1.01679 0.93077 1.40647 0.90394 1.24811 0.95170 0.97993 0.94783 1.69894 1.23559 1.13947 1.46142 0.86995 0.82916 0.81027 0.79783 1.19947 1.21087 1.18452 1.02470 0.73998 0.73147 0.73541 1.93625 1.61121 1.68629 1.69021 1.93509 1.80496 1.43744 1.78226 1.31732 1.24597 1.04293 1.14253 1.20988 0.94186 0.96944 0.90769 1.21186 0.95226 0.96879 1.01422 1.21090 0.89956 0.96653 0.94234 1.98368 1.38709 1.95262 1.71116 1.19848 0.97232 0.97667 0.95602 1.20880 0.99082 0.94514 1.03049 1.20763 0.91229 0.94274 0.97013 0.89921 0.94507 0.94723 0.92585 0.94014 0.87868 0.88277 0.92784 0.95733 0.92617 0.83052 0.84042 0.90528 0.90625 0.90722 0.83573 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.35 11.01 101.05 1.11 1.46 16 2 O -0.37 -5.79 9.02 -35.23 -0.32 -6.11 16 3 C 0.04 0.52 6.28 37.16 0.23 0.75 16 4 C 0.12 1.93 6.13 -4.04 -0.02 1.90 16 5 N -0.97 -18.80 2.75 -115.67 -0.32 -19.12 16 6 C 0.23 5.22 4.01 -5.20 -0.02 5.20 16 7 C -0.53 -14.78 9.94 -34.44 -0.34 -15.12 16 8 H 0.08 2.37 8.06 -52.48 -0.42 1.95 16 9 C 0.07 2.15 5.47 -17.82 -0.10 2.06 16 10 N -0.90 -27.43 13.96 55.43 0.77 -26.65 16 11 Si 0.87 21.05 27.47 -169.99 -4.67 16.38 16 12 H -0.27 -6.57 7.11 56.52 0.40 -6.17 16 13 H -0.29 -6.87 7.11 56.52 0.40 -6.47 16 14 H -0.26 -5.94 6.54 56.52 0.37 -5.57 16 15 S 2.68 50.39 5.65 -107.50 -0.61 49.78 16 16 O -0.93 -21.04 16.25 -57.17 -0.93 -21.97 16 17 O -0.97 -18.45 15.83 -57.17 -0.91 -19.36 16 18 C -0.67 -10.08 5.97 -39.58 -0.24 -10.32 16 19 C -0.01 -0.14 9.52 -39.59 -0.38 -0.51 16 20 C -0.13 -1.55 9.83 -39.55 -0.39 -1.94 16 21 C 0.01 0.09 6.31 -39.49 -0.25 -0.16 16 22 Cl -0.06 -0.62 27.30 -51.86 -1.42 -2.04 16 23 C -0.10 -1.15 5.88 -104.59 -0.62 -1.77 16 24 C -0.12 -0.98 9.61 36.00 0.35 -0.63 16 25 C -0.01 -0.17 8.03 -39.59 -0.32 -0.49 16 26 H 0.08 0.92 8.14 -51.93 -0.42 0.49 16 27 H 0.04 0.36 8.14 -51.93 -0.42 -0.06 16 28 H 0.03 0.37 8.14 -51.93 -0.42 -0.05 16 29 H 0.06 0.60 8.14 -51.93 -0.42 0.17 16 30 H 0.04 0.51 6.95 -51.93 -0.36 0.15 16 31 H 0.10 1.76 8.11 -51.93 -0.42 1.33 16 32 H 0.10 1.39 6.91 -51.93 -0.36 1.04 16 33 H 0.05 1.24 5.66 -51.93 -0.29 0.95 16 34 H 0.02 0.57 7.03 -51.93 -0.37 0.20 16 35 H 0.26 7.55 8.31 -40.82 -0.34 7.21 16 36 H 0.15 2.14 7.62 -52.49 -0.40 1.74 16 37 H 0.14 1.38 8.06 -52.49 -0.42 0.96 16 38 H 0.08 0.55 8.14 -51.93 -0.42 0.13 16 39 H 0.07 0.53 8.09 -51.93 -0.42 0.11 16 40 H 0.07 0.58 6.91 -51.93 -0.36 0.22 16 41 H 0.15 1.62 7.62 -52.49 -0.40 1.22 16 LS Contribution 367.02 15.07 5.53 5.53 Total: -1.00 -34.23 367.02 -9.34 -43.57 By element: Atomic # 1 Polarization: 5.05 SS G_CDS: -5.50 Total: -0.45 kcal Atomic # 6 Polarization: -18.59 SS G_CDS: -0.98 Total: -19.56 kcal Atomic # 7 Polarization: -46.23 SS G_CDS: 0.45 Total: -45.77 kcal Atomic # 8 Polarization: -45.28 SS G_CDS: -2.15 Total: -47.43 kcal Atomic # 14 Polarization: 21.05 SS G_CDS: -4.67 Total: 16.38 kcal Atomic # 16 Polarization: 50.39 SS G_CDS: -0.61 Total: 49.78 kcal Atomic # 17 Polarization: -0.62 SS G_CDS: -1.42 Total: -2.04 kcal Total LS contribution 5.53 Total: 5.53 kcal Total: -34.23 -9.34 -43.57 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000594448794.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -50.383 kcal (2) G-P(sol) polarization free energy of solvation -34.228 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -84.611 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.341 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.569 kcal (6) G-S(sol) free energy of system = (1) + (5) -93.952 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds