Wall clock time and date at job start Wed Apr 1 2020 04:45:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.42900 * 114.00150 * 2 1 4 4 C 1.52996 * 109.47578 * 179.97438 * 3 2 1 5 5 N 1.46505 * 109.46933 * 64.99566 * 4 3 2 6 6 C 1.46498 * 120.00291 * 275.00251 * 5 4 3 7 7 C 1.50696 * 109.46991 * 274.99864 * 6 5 4 8 8 H 1.08004 * 120.00207 * 0.02562 * 7 6 5 9 9 C 1.37877 * 119.99948 * 180.02562 * 7 6 5 10 10 N 1.31518 * 120.00091 * 180.02562 * 9 7 6 11 11 Si 1.86802 * 119.99879 * 0.02562 * 9 7 6 12 12 H 1.48501 * 109.47060 * 90.00262 * 11 9 7 13 13 H 1.48507 * 109.46819 * 210.00297 * 11 9 7 14 14 H 1.48500 * 109.47005 * 329.99906 * 11 9 7 15 15 S 1.65599 * 119.99304 * 95.00132 * 5 4 3 16 16 O 1.42104 * 106.40015 * 156.45996 * 15 5 4 17 17 O 1.42103 * 106.40833 * 23.54314 * 15 5 4 18 18 C 1.76195 * 107.22001 * 269.99761 * 15 5 4 19 19 C 1.38264 * 119.98781 * 270.02640 * 18 15 5 20 20 C 1.38189 * 120.01199 * 179.97438 * 19 18 15 21 21 C 1.38377 * 119.99104 * 359.97438 * 20 19 18 22 22 Cl 1.73595 * 120.01640 * 180.27805 * 21 20 19 23 23 C 1.38335 * 119.96836 * 0.02562 * 21 20 19 24 24 C 1.50697 * 120.00426 * 180.02562 * 23 21 20 25 25 C 1.38220 * 119.98635 * 90.00691 * 18 15 5 26 26 H 1.09001 * 109.46774 * 180.02562 * 1 2 3 27 27 H 1.09002 * 109.47137 * 299.99680 * 1 2 3 28 28 H 1.08996 * 109.46887 * 60.00241 * 1 2 3 29 29 H 1.09007 * 109.46784 * 59.99499 * 3 2 1 30 30 H 1.09003 * 109.46934 * 300.00196 * 3 2 1 31 31 H 1.08996 * 109.47099 * 305.00122 * 4 3 2 32 32 H 1.08999 * 109.47235 * 184.99686 * 4 3 2 33 33 H 1.08998 * 109.47067 * 34.99798 * 6 5 4 34 34 H 1.09000 * 109.47025 * 155.00239 * 6 5 4 35 35 H 0.96998 * 119.99956 * 179.97438 * 10 9 7 36 36 H 1.07997 * 119.99869 * 359.97438 * 19 18 15 37 37 H 1.08001 * 120.00973 * 180.02562 * 20 19 18 38 38 H 1.08997 * 109.47389 * 89.99590 * 24 23 21 39 39 H 1.09002 * 109.47291 * 210.00065 * 24 23 21 40 40 H 1.09002 * 109.47234 * 329.99582 * 24 23 21 41 41 H 1.08002 * 119.99090 * 0.04050 * 25 18 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 6 3.5354 1.1847 0.0006 5 7 3.9767 0.5639 -1.2509 6 6 4.0015 -0.8955 -1.3758 7 6 5.3000 -1.4248 -0.8239 8 1 6.0334 -0.7424 -0.4201 9 6 5.5520 -2.7803 -0.8345 10 7 6.6851 -3.2424 -0.3524 11 14 4.2840 -3.9606 -1.5335 12 1 4.5350 -4.1544 -2.9843 13 1 4.3856 -5.2670 -0.8346 14 1 2.9235 -3.3987 -1.3372 15 16 4.4473 1.5121 -2.5244 16 8 5.3032 0.7104 -3.3268 17 8 4.8442 2.7594 -1.9710 18 6 3.0119 1.8325 -3.4946 19 6 2.6686 0.9761 -4.5244 20 6 1.5426 1.2266 -5.2854 21 6 0.7582 2.3344 -5.0163 22 17 -0.6604 2.6457 -5.9671 23 6 1.1022 3.1907 -3.9858 24 6 0.2483 4.3971 -3.6916 25 6 2.2292 2.9395 -3.2257 26 1 -0.3633 -1.0277 0.0005 27 1 -0.3633 0.5138 0.8900 28 1 -0.3633 0.5138 -0.8900 29 1 1.6885 1.8464 0.8900 30 1 1.6886 1.8464 -0.8900 31 1 3.8508 0.5686 0.8427 32 1 3.9784 2.1766 0.0902 33 1 3.1685 -1.3222 -0.8171 34 1 3.9138 -1.1718 -2.4265 35 1 6.8622 -4.1960 -0.3595 36 1 3.2805 0.1113 -4.7342 37 1 1.2743 0.5574 -6.0895 38 1 -0.5219 4.1294 -2.9682 39 1 0.8713 5.1920 -3.2817 40 1 -0.2222 4.7424 -4.6122 41 1 2.4980 3.6082 -2.4213 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000594448794.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:45:57 Heat of formation + Delta-G solvation = -117.948822 kcal Electronic energy + Delta-G solvation = -27430.713688 eV Core-core repulsion = 23463.113345 eV Total energy + Delta-G solvation = -3967.600343 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 347.079 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -40.62026 -39.09068 -38.36444 -37.67048 -37.05711 -36.88366 -34.54446 -34.04084 -32.23868 -31.36286 -28.85798 -28.08551 -26.97575 -24.48943 -24.26614 -23.36749 -22.92738 -19.86271 -19.16052 -18.72758 -18.47744 -17.62886 -17.51716 -17.04819 -16.98190 -16.46419 -16.09664 -15.72859 -15.50684 -15.32077 -15.27555 -14.48036 -14.42057 -14.08803 -14.00199 -13.70739 -13.48164 -13.43681 -13.37529 -13.31036 -13.18042 -12.98920 -12.89210 -12.70197 -12.66514 -12.48335 -12.14975 -12.08280 -11.91700 -11.87457 -11.74510 -11.64706 -10.73322 -10.53580 -10.23157 -9.96771 -9.74381 -8.24473 -6.28105 -0.73899 -0.45408 0.04269 0.86097 1.38917 1.40879 1.51563 1.89302 2.29474 2.39062 2.77520 2.98208 3.10790 3.19420 3.58009 3.60292 3.91958 4.02281 4.08776 4.17300 4.27019 4.41719 4.47382 4.48290 4.58046 4.63532 4.66595 4.73903 4.75043 4.80170 4.89166 4.90107 4.99986 5.09045 5.14949 5.16923 5.41412 5.52945 5.54111 5.75091 6.34696 6.40231 6.74163 7.34067 8.92942 Molecular weight = 347.08amu Principal moments of inertia in cm(-1) A = 0.012250 B = 0.004191 C = 0.004179 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2285.107977 B = 6679.745097 C = 6697.837276 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.406 6.406 3 C 0.044 3.956 4 C 0.110 3.890 5 N -0.976 5.976 6 C 0.240 3.760 7 C -0.536 4.536 8 H 0.032 0.968 9 C 0.011 3.989 10 N -0.949 5.949 11 Si 0.934 3.066 12 H -0.267 1.267 13 H -0.280 1.280 14 H -0.233 1.233 15 S 2.686 3.314 16 O -0.985 6.985 17 O -0.980 6.980 18 C -0.668 4.668 19 C -0.029 4.029 20 C -0.124 4.124 21 C 0.007 3.993 22 Cl -0.042 7.042 23 C -0.095 4.095 24 C -0.120 4.120 25 C -0.017 4.017 26 H 0.084 0.916 27 H 0.057 0.943 28 H 0.045 0.955 29 H 0.089 0.911 30 H 0.057 0.943 31 H 0.083 0.917 32 H 0.115 0.885 33 H 0.063 0.937 34 H 0.028 0.972 35 H 0.266 0.734 36 H 0.143 0.857 37 H 0.164 0.836 38 H 0.093 0.907 39 H 0.089 0.911 40 H 0.081 0.919 41 H 0.163 0.837 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.290 14.547 -6.650 26.629 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 O -0.326 6.326 3 C -0.034 4.034 4 C -0.015 4.015 5 N -0.813 5.813 6 C 0.116 3.884 7 C -0.575 4.575 8 H 0.051 0.949 9 C -0.187 4.187 10 N -0.589 5.589 11 Si 0.756 3.244 12 H -0.192 1.192 13 H -0.206 1.206 14 H -0.156 1.156 15 S 2.779 3.221 16 O -0.975 6.975 17 O -0.971 6.971 18 C -0.757 4.757 19 C -0.048 4.048 20 C -0.144 4.144 21 C -0.021 4.021 22 Cl -0.013 7.013 23 C -0.096 4.096 24 C -0.177 4.177 25 C -0.037 4.037 26 H 0.103 0.897 27 H 0.075 0.925 28 H 0.063 0.937 29 H 0.107 0.893 30 H 0.075 0.925 31 H 0.102 0.898 32 H 0.133 0.867 33 H 0.080 0.920 34 H 0.046 0.954 35 H 0.075 0.925 36 H 0.161 0.839 37 H 0.182 0.818 38 H 0.112 0.888 39 H 0.108 0.892 40 H 0.100 0.900 41 H 0.180 0.820 Dipole moment (debyes) X Y Z Total from point charges -20.376 14.554 -6.848 25.959 hybrid contribution -0.492 -0.877 -0.445 1.099 sum -20.867 13.677 -7.293 25.994 Atomic orbital electron populations 1.22872 0.80295 1.03175 1.00711 1.88016 1.20759 1.28308 1.95493 1.23198 0.93092 0.85192 1.01963 1.21634 0.93361 0.99733 0.86818 1.56991 1.82437 1.16453 1.25442 1.19217 0.96417 0.76089 0.96707 1.21709 1.02882 0.92806 1.40103 0.94915 1.25804 0.97496 1.00163 0.95218 1.70062 1.26125 1.14523 1.48214 0.85919 0.81128 0.78330 0.79027 1.19225 1.20557 1.15562 1.01808 0.74640 0.72435 0.73198 1.93557 1.64100 1.69840 1.70035 1.93478 1.81517 1.43504 1.78586 1.30959 1.23672 1.06373 1.14686 1.21029 0.95327 0.97023 0.91456 1.21380 0.94209 0.97432 1.01345 1.21271 0.90354 0.96205 0.94230 1.98382 1.37319 1.95082 1.70486 1.20174 0.96597 0.98301 0.94573 1.21008 0.99226 0.93434 1.03988 1.20989 0.91342 0.93563 0.97770 0.89744 0.92473 0.93669 0.89337 0.92505 0.89850 0.86749 0.91958 0.95402 0.92487 0.83905 0.81846 0.88838 0.89208 0.90010 0.81999 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.52 11.01 113.37 1.25 1.77 16 2 O -0.41 -11.91 9.02 -148.98 -1.34 -13.25 16 3 C 0.04 1.07 6.28 71.98 0.45 1.53 16 4 C 0.11 3.52 6.13 86.38 0.53 4.05 16 5 N -0.98 -38.68 2.75 -519.86 -1.43 -40.12 16 6 C 0.24 11.28 4.01 85.63 0.34 11.62 16 7 C -0.54 -31.37 9.94 25.60 0.25 -31.11 16 8 H 0.03 2.14 8.06 -2.91 -0.02 2.11 16 9 C 0.01 0.64 5.47 84.65 0.46 1.10 16 10 N -0.95 -60.55 13.96 21.45 0.30 -60.26 16 11 Si 0.93 43.77 27.47 68.60 1.88 45.65 16 12 H -0.27 -12.17 7.11 99.48 0.71 -11.47 16 13 H -0.28 -12.82 7.11 99.48 0.71 -12.11 16 14 H -0.23 -9.80 6.54 99.48 0.65 -9.15 16 15 S 2.69 103.15 5.65 -56.49 -0.32 102.83 16 16 O -0.98 -46.60 16.25 -128.00 -2.08 -48.68 16 17 O -0.98 -37.75 15.83 -128.00 -2.03 -39.78 16 18 C -0.67 -19.58 5.97 22.27 0.13 -19.45 16 19 C -0.03 -0.79 9.52 22.26 0.21 -0.58 16 20 C -0.12 -2.70 9.83 22.29 0.22 -2.48 16 21 C 0.01 0.13 6.31 22.33 0.14 0.27 16 22 Cl -0.04 -0.67 27.30 -2.72 -0.07 -0.74 16 23 C -0.09 -1.80 5.88 -19.84 -0.12 -1.92 16 24 C -0.12 -1.45 9.61 71.23 0.68 -0.77 16 25 C -0.02 -0.40 8.03 22.26 0.18 -0.22 16 26 H 0.08 1.65 8.14 -2.39 -0.02 1.63 16 27 H 0.06 0.91 8.14 -2.39 -0.02 0.89 16 28 H 0.04 0.81 8.14 -2.39 -0.02 0.79 16 29 H 0.09 1.60 8.14 -2.38 -0.02 1.58 16 30 H 0.06 1.22 6.95 -2.39 -0.02 1.20 16 31 H 0.08 2.95 8.11 -2.39 -0.02 2.93 16 32 H 0.11 3.21 6.91 -2.39 -0.02 3.20 16 33 H 0.06 2.84 5.66 -2.39 -0.01 2.82 16 34 H 0.03 1.29 7.03 -2.39 -0.02 1.28 16 35 H 0.27 15.82 8.31 -92.71 -0.77 15.05 16 36 H 0.14 4.09 7.62 -2.91 -0.02 4.07 16 37 H 0.16 2.72 8.06 -2.91 -0.02 2.70 16 38 H 0.09 0.88 8.14 -2.39 -0.02 0.86 16 39 H 0.09 0.87 8.09 -2.39 -0.02 0.85 16 40 H 0.08 0.90 6.91 -2.39 -0.02 0.88 16 41 H 0.16 3.13 7.62 -2.91 -0.02 3.11 16 Total: -1.00 -77.92 367.02 0.64 -77.28 By element: Atomic # 1 Polarization: 12.24 SS G_CDS: 0.99 Total: 13.23 kcal Atomic # 6 Polarization: -40.92 SS G_CDS: 4.74 Total: -36.18 kcal Atomic # 7 Polarization: -99.24 SS G_CDS: -1.13 Total: -100.37 kcal Atomic # 8 Polarization: -96.26 SS G_CDS: -5.45 Total: -101.71 kcal Atomic # 14 Polarization: 43.77 SS G_CDS: 1.88 Total: 45.65 kcal Atomic # 16 Polarization: 103.15 SS G_CDS: -0.32 Total: 102.83 kcal Atomic # 17 Polarization: -0.67 SS G_CDS: -0.07 Total: -0.74 kcal Total: -77.92 0.64 -77.28 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000594448794.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -40.666 kcal (2) G-P(sol) polarization free energy of solvation -77.919 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -118.585 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.636 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.283 kcal (6) G-S(sol) free energy of system = (1) + (5) -117.949 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds