Wall clock time and date at job start Wed Apr 1 2020 05:00:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53000 * 109.47495 * 2 1 4 4 C 1.50701 * 109.47222 * 240.00261 * 2 1 3 5 5 H 1.08008 * 120.00279 * 240.00466 * 4 2 1 6 6 C 1.37882 * 120.00102 * 60.00073 * 4 2 1 7 7 N 1.31517 * 119.99722 * 0.02562 * 6 4 2 8 8 Si 1.86796 * 120.00187 * 180.02562 * 6 4 2 9 9 H 1.48504 * 109.47232 * 60.00143 * 8 6 4 10 10 H 1.48497 * 109.47247 * 179.97438 * 8 6 4 11 11 H 1.48499 * 109.47175 * 300.00287 * 8 6 4 12 12 C 1.52998 * 109.47319 * 120.00472 * 2 1 3 13 13 S 1.81401 * 109.46866 * 299.99911 * 12 2 1 14 14 O 1.42102 * 110.54326 * 68.37579 * 13 12 2 15 15 O 1.42097 * 110.54474 * 291.62182 * 13 12 2 16 16 N 1.65608 * 104.44945 * 179.97438 * 13 12 2 17 17 C 1.46495 * 119.99695 * 64.99881 * 16 13 12 18 18 C 1.50701 * 109.47031 * 165.00069 * 17 16 13 19 19 N 1.28645 * 124.72384 * 90.00141 * 18 17 16 20 20 C 1.33553 * 115.77244 * 180.02562 * 19 18 17 21 21 C 1.47267 * 123.14479 * 180.02562 * 20 19 18 22 22 N 1.34776 * 119.99762 * 359.97438 * 21 20 19 23 23 O 1.21635 * 119.99833 * 179.97438 * 21 20 19 24 24 C 1.35215 * 113.71311 * 0.02562 * 20 19 18 25 25 S 1.70777 * 124.72013 * 269.70069 * 18 17 16 26 26 H 1.08992 * 109.46955 * 299.99960 * 1 2 3 27 27 H 1.09004 * 109.46694 * 59.99764 * 1 2 3 28 28 H 1.09000 * 109.47064 * 179.97438 * 1 2 3 29 29 H 1.08996 * 109.47093 * 179.97438 * 3 2 1 30 30 H 1.08992 * 109.47455 * 300.00561 * 3 2 1 31 31 H 1.09007 * 109.46604 * 60.00248 * 3 2 1 32 32 H 0.96992 * 119.99792 * 180.02562 * 7 6 4 33 33 H 1.08996 * 109.47800 * 179.97438 * 12 2 1 34 34 H 1.09006 * 109.47089 * 59.99467 * 12 2 1 35 35 H 0.96999 * 120.00176 * 245.00119 * 16 13 12 36 36 H 1.09000 * 109.47742 * 285.00040 * 17 16 13 37 37 H 1.09003 * 109.47545 * 44.99964 * 17 16 13 38 38 H 0.96994 * 120.00135 * 0.02562 * 22 21 20 39 39 H 0.97005 * 119.99451 * 179.97438 * 22 21 20 40 40 H 1.08000 * 125.58118 * 180.02562 * 24 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0324 -0.7103 -1.2305 5 1 2.6533 -1.5886 -1.1315 6 6 1.6993 -0.2392 -2.4828 7 7 0.9436 0.8304 -2.6034 8 14 2.3214 -1.1201 -4.0080 9 1 1.8258 -2.5200 -4.0079 10 1 1.8260 -0.4203 -5.2205 11 1 3.8064 -1.1208 -4.0082 12 6 2.0400 -0.7213 1.2491 13 16 1.4354 0.1337 2.7303 14 8 0.0280 -0.0185 2.8544 15 8 2.0480 1.4098 2.8545 16 7 2.0531 -0.7411 3.9936 17 6 3.5014 -0.7984 4.2058 18 6 3.7860 -1.3269 5.5882 19 7 3.9411 -2.5702 5.8798 20 6 4.1864 -2.8390 7.1648 21 6 4.3905 -4.2045 7.6770 22 7 4.3331 -5.2556 6.8353 23 8 4.6110 -4.3838 8.8597 24 6 4.2297 -1.7402 7.9516 25 16 3.9547 -0.3579 6.9843 26 1 -0.3633 0.5138 0.8899 27 1 -0.3633 0.5139 -0.8900 28 1 -0.3633 -1.0277 -0.0005 29 1 3.1301 1.4424 0.0005 30 1 1.6768 1.9564 -0.8899 31 1 1.6768 1.9563 0.8901 32 1 0.7090 1.1616 -3.4843 33 1 3.1300 -0.7218 1.2490 34 1 1.6766 -1.7490 1.2491 35 1 1.4559 -1.2155 4.5929 36 1 3.9515 -1.4588 3.4647 37 1 3.9233 0.2016 4.1052 38 1 4.1576 -5.1125 5.8921 39 1 4.4679 -6.1550 7.1727 40 1 4.4141 -1.7361 9.0157 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000594863213.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:00:48 Heat of formation + Delta-G solvation = -68.499188 kcal Electronic energy + Delta-G solvation = -25959.383214 eV Core-core repulsion = 22028.263625 eV Total energy + Delta-G solvation = -3931.119589 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 347.081 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -40.82874 -38.89498 -36.69633 -36.33851 -35.64877 -35.33318 -33.97586 -31.71466 -31.06978 -27.50075 -26.69984 -25.76662 -25.54200 -25.25674 -22.03669 -20.20209 -19.77050 -19.16680 -18.85638 -17.82980 -17.45807 -16.62729 -16.25888 -16.00391 -15.66779 -15.51793 -15.17750 -14.80397 -14.68925 -14.46311 -14.09791 -13.52195 -13.35435 -13.05543 -13.02543 -12.55825 -12.32281 -12.17024 -11.93627 -11.55561 -11.16756 -11.09854 -11.01019 -10.76537 -10.68984 -10.47253 -10.35514 -10.32828 -10.16995 -10.11354 -10.07641 -9.77468 -9.70092 -9.45545 -9.35792 -8.74221 -8.43796 -6.07385 -4.19704 0.03222 0.69088 0.81641 1.21214 1.49711 2.92882 3.10113 3.15248 3.24381 3.30315 3.31628 3.55828 4.16939 4.31123 4.35000 4.63567 4.75136 4.82044 4.94246 5.17201 5.18076 5.42708 5.43815 5.60881 5.75499 6.31153 6.35479 6.64846 6.74338 6.78945 6.83981 6.87264 6.99826 7.11165 7.26648 7.45315 7.63893 7.84461 7.93832 8.04819 8.28324 8.78683 9.46038 10.93918 Molecular weight = 347.08amu Principal moments of inertia in cm(-1) A = 0.017281 B = 0.002668 C = 0.002451 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1619.885545 B =10492.879077 C =11423.033090 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C 0.083 3.917 3 C -0.164 4.164 4 C -0.504 4.504 5 H 0.059 0.941 6 C 0.065 3.935 7 N -0.883 5.883 8 Si 0.896 3.104 9 H -0.277 1.277 10 H -0.286 1.286 11 H -0.277 1.277 12 C -0.580 4.580 13 S 2.592 3.408 14 O -0.958 6.958 15 O -0.961 6.961 16 N -1.127 6.127 17 C 0.195 3.805 18 C 0.013 3.987 19 N -0.429 5.429 20 C -0.001 4.001 21 C 0.603 3.397 22 N -0.836 5.836 23 O -0.541 6.541 24 C -0.226 4.226 25 S 0.256 5.744 26 H 0.027 0.973 27 H 0.095 0.905 28 H 0.037 0.963 29 H 0.037 0.963 30 H 0.095 0.905 31 H 0.028 0.972 32 H 0.263 0.737 33 H 0.119 0.881 34 H 0.122 0.878 35 H 0.415 0.585 36 H 0.100 0.900 37 H 0.105 0.895 38 H 0.413 0.587 39 H 0.406 0.594 40 H 0.192 0.808 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.999 -5.328 17.260 19.373 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.223 4.223 2 C 0.080 3.920 3 C -0.222 4.222 4 C -0.543 4.543 5 H 0.077 0.923 6 C -0.137 4.137 7 N -0.521 5.521 8 Si 0.724 3.276 9 H -0.203 1.203 10 H -0.212 1.212 11 H -0.202 1.202 12 C -0.714 4.714 13 S 2.690 3.310 14 O -0.949 6.949 15 O -0.951 6.951 16 N -0.884 5.884 17 C 0.065 3.935 18 C -0.267 4.267 19 N -0.146 5.146 20 C -0.137 4.137 21 C 0.385 3.615 22 N -0.399 5.399 23 O -0.418 6.418 24 C -0.369 4.369 25 S 0.513 5.487 26 H 0.046 0.954 27 H 0.114 0.886 28 H 0.056 0.944 29 H 0.056 0.944 30 H 0.114 0.886 31 H 0.047 0.953 32 H 0.074 0.926 33 H 0.137 0.863 34 H 0.140 0.860 35 H 0.248 0.752 36 H 0.118 0.882 37 H 0.123 0.877 38 H 0.243 0.757 39 H 0.237 0.763 40 H 0.209 0.791 Dipole moment (debyes) X Y Z Total from point charges 6.542 -3.585 17.648 19.160 hybrid contribution 0.581 -2.606 -0.832 2.796 sum 7.123 -6.191 16.816 19.283 Atomic orbital electron populations 1.22287 0.96910 1.00703 1.02354 1.17931 0.92837 0.92217 0.88984 1.22286 0.99749 0.97769 1.02413 1.20903 1.31909 1.12159 0.89368 0.92291 1.24936 0.94852 0.94961 0.98939 1.69785 1.36170 1.22516 1.23657 0.86591 0.79150 0.79720 0.82129 1.20273 1.21193 1.20248 1.30526 1.11315 1.13031 1.16531 1.05788 0.74544 0.75154 0.75539 1.93573 1.29142 1.86534 1.85605 1.93547 1.78132 1.37911 1.85466 1.56009 1.12612 1.71428 1.48401 1.19770 0.82263 1.02302 0.89136 1.27006 1.05724 0.92047 1.01939 1.66900 1.13017 1.18333 1.16324 1.20317 1.09270 0.95683 0.88466 1.17027 0.75874 0.83284 0.85281 1.43625 1.74098 1.09002 1.13163 1.90866 1.49641 1.85489 1.15796 1.26789 1.06173 0.96590 1.07332 1.83228 1.59458 1.08466 0.97518 0.95386 0.88603 0.94410 0.94395 0.88620 0.95309 0.92641 0.86276 0.85992 0.75185 0.88218 0.87661 0.75719 0.76287 0.79126 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.91 7.78 37.16 0.29 -3.62 16 2 C 0.08 1.90 0.52 -155.66 -0.08 1.82 16 3 C -0.16 -3.83 7.78 37.16 0.29 -3.55 16 4 C -0.50 -12.72 8.01 -34.44 -0.28 -13.00 16 5 H 0.06 1.44 7.74 -52.48 -0.41 1.03 16 6 C 0.07 1.68 5.15 -17.82 -0.09 1.59 16 7 N -0.88 -23.48 9.35 55.43 0.52 -22.96 16 8 Si 0.90 20.09 29.54 -169.99 -5.02 15.07 16 9 H -0.28 -6.18 7.11 56.52 0.40 -5.77 16 10 H -0.29 -6.43 7.11 56.52 0.40 -6.03 16 11 H -0.28 -6.14 7.11 56.52 0.40 -5.74 16 12 C -0.58 -10.32 5.01 37.16 0.19 -10.13 16 13 S 2.59 43.26 4.49 -107.50 -0.48 42.78 16 14 O -0.96 -18.78 15.70 -57.54 -0.90 -19.68 16 15 O -0.96 -18.02 15.12 -57.54 -0.87 -18.89 16 16 N -1.13 -13.43 5.88 -11.66 -0.07 -13.50 16 17 C 0.19 1.93 6.70 -5.20 -0.03 1.90 16 18 C 0.01 0.13 6.74 -13.61 -0.09 0.04 16 19 N -0.43 -4.36 10.12 -8.51 -0.09 -4.45 16 20 C 0.00 -0.01 6.70 -84.53 -0.57 -0.58 16 21 C 0.60 6.47 8.07 -12.59 -0.10 6.37 16 22 N -0.84 -6.22 8.87 30.40 0.27 -5.95 16 23 O -0.54 -7.34 17.55 5.25 0.09 -7.25 16 24 C -0.23 -1.97 10.62 29.66 0.31 -1.66 16 25 S 0.26 1.99 22.92 -107.50 -2.46 -0.47 16 26 H 0.03 0.63 5.46 -51.93 -0.28 0.34 16 27 H 0.10 2.47 6.07 -51.93 -0.32 2.15 16 28 H 0.04 0.85 8.14 -51.93 -0.42 0.43 16 29 H 0.04 0.83 8.14 -51.93 -0.42 0.41 16 30 H 0.10 2.44 6.07 -51.93 -0.32 2.12 16 31 H 0.03 0.63 5.46 -51.93 -0.28 0.35 16 32 H 0.26 6.73 8.31 -40.82 -0.34 6.39 16 33 H 0.12 1.83 8.14 -51.93 -0.42 1.41 16 34 H 0.12 1.97 8.14 -51.92 -0.42 1.55 16 35 H 0.42 4.43 8.61 -34.48 -0.30 4.13 16 36 H 0.10 0.84 8.14 -51.93 -0.42 0.42 16 37 H 0.11 0.95 7.70 -51.93 -0.40 0.55 16 38 H 0.41 2.65 8.35 -40.82 -0.34 2.31 16 39 H 0.41 2.26 8.93 -40.82 -0.36 1.90 16 40 H 0.19 1.40 8.03 -52.49 -0.42 0.98 16 LS Contribution 355.36 15.07 5.36 5.36 Total: -1.00 -33.34 355.36 -8.50 -41.84 By element: Atomic # 1 Polarization: 13.60 SS G_CDS: -4.68 Total: 8.92 kcal Atomic # 6 Polarization: -20.65 SS G_CDS: -0.16 Total: -20.81 kcal Atomic # 7 Polarization: -47.49 SS G_CDS: 0.63 Total: -46.86 kcal Atomic # 8 Polarization: -44.14 SS G_CDS: -1.68 Total: -45.82 kcal Atomic # 14 Polarization: 20.09 SS G_CDS: -5.02 Total: 15.07 kcal Atomic # 16 Polarization: 45.25 SS G_CDS: -2.95 Total: 42.31 kcal Total LS contribution 5.36 Total: 5.36 kcal Total: -33.34 -8.50 -41.84 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000594863213.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -26.660 kcal (2) G-P(sol) polarization free energy of solvation -33.339 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -60.000 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.499 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.839 kcal (6) G-S(sol) free energy of system = (1) + (5) -68.499 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds