Wall clock time and date at job start Wed Apr 1 2020 05:00:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53000 * 109.47495 * 2 1 4 4 C 1.50701 * 109.47222 * 240.00261 * 2 1 3 5 5 H 1.08008 * 120.00279 * 240.00466 * 4 2 1 6 6 C 1.37882 * 120.00102 * 60.00073 * 4 2 1 7 7 N 1.31517 * 119.99722 * 0.02562 * 6 4 2 8 8 Si 1.86796 * 120.00187 * 180.02562 * 6 4 2 9 9 H 1.48504 * 109.47232 * 60.00143 * 8 6 4 10 10 H 1.48497 * 109.47247 * 179.97438 * 8 6 4 11 11 H 1.48499 * 109.47175 * 300.00287 * 8 6 4 12 12 C 1.52998 * 109.47319 * 120.00472 * 2 1 3 13 13 S 1.81401 * 109.46866 * 299.99911 * 12 2 1 14 14 O 1.42102 * 110.54326 * 68.37579 * 13 12 2 15 15 O 1.42097 * 110.54474 * 291.62182 * 13 12 2 16 16 N 1.65608 * 104.44945 * 179.97438 * 13 12 2 17 17 C 1.46495 * 119.99695 * 64.99881 * 16 13 12 18 18 C 1.50701 * 109.47031 * 165.00069 * 17 16 13 19 19 N 1.28645 * 124.72384 * 90.00141 * 18 17 16 20 20 C 1.33553 * 115.77244 * 180.02562 * 19 18 17 21 21 C 1.47267 * 123.14479 * 180.02562 * 20 19 18 22 22 N 1.34776 * 119.99762 * 359.97438 * 21 20 19 23 23 O 1.21635 * 119.99833 * 179.97438 * 21 20 19 24 24 C 1.35215 * 113.71311 * 0.02562 * 20 19 18 25 25 S 1.70777 * 124.72013 * 269.70069 * 18 17 16 26 26 H 1.08992 * 109.46955 * 299.99960 * 1 2 3 27 27 H 1.09004 * 109.46694 * 59.99764 * 1 2 3 28 28 H 1.09000 * 109.47064 * 179.97438 * 1 2 3 29 29 H 1.08996 * 109.47093 * 179.97438 * 3 2 1 30 30 H 1.08992 * 109.47455 * 300.00561 * 3 2 1 31 31 H 1.09007 * 109.46604 * 60.00248 * 3 2 1 32 32 H 0.96992 * 119.99792 * 180.02562 * 7 6 4 33 33 H 1.08996 * 109.47800 * 179.97438 * 12 2 1 34 34 H 1.09006 * 109.47089 * 59.99467 * 12 2 1 35 35 H 0.96999 * 120.00176 * 245.00119 * 16 13 12 36 36 H 1.09000 * 109.47742 * 285.00040 * 17 16 13 37 37 H 1.09003 * 109.47545 * 44.99964 * 17 16 13 38 38 H 0.96994 * 120.00135 * 0.02562 * 22 21 20 39 39 H 0.97005 * 119.99451 * 179.97438 * 22 21 20 40 40 H 1.08000 * 125.58118 * 180.02562 * 24 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0324 -0.7103 -1.2305 5 1 2.6533 -1.5886 -1.1315 6 6 1.6993 -0.2392 -2.4828 7 7 0.9436 0.8304 -2.6034 8 14 2.3214 -1.1201 -4.0080 9 1 1.8258 -2.5200 -4.0079 10 1 1.8260 -0.4203 -5.2205 11 1 3.8064 -1.1208 -4.0082 12 6 2.0400 -0.7213 1.2491 13 16 1.4354 0.1337 2.7303 14 8 0.0280 -0.0185 2.8544 15 8 2.0480 1.4098 2.8545 16 7 2.0531 -0.7411 3.9936 17 6 3.5014 -0.7984 4.2058 18 6 3.7860 -1.3269 5.5882 19 7 3.9411 -2.5702 5.8798 20 6 4.1864 -2.8390 7.1648 21 6 4.3905 -4.2045 7.6770 22 7 4.3331 -5.2556 6.8353 23 8 4.6110 -4.3838 8.8597 24 6 4.2297 -1.7402 7.9516 25 16 3.9547 -0.3579 6.9843 26 1 -0.3633 0.5138 0.8899 27 1 -0.3633 0.5139 -0.8900 28 1 -0.3633 -1.0277 -0.0005 29 1 3.1301 1.4424 0.0005 30 1 1.6768 1.9564 -0.8899 31 1 1.6768 1.9563 0.8901 32 1 0.7090 1.1616 -3.4843 33 1 3.1300 -0.7218 1.2490 34 1 1.6766 -1.7490 1.2491 35 1 1.4559 -1.2155 4.5929 36 1 3.9515 -1.4588 3.4647 37 1 3.9233 0.2016 4.1052 38 1 4.1576 -5.1125 5.8921 39 1 4.4679 -6.1550 7.1727 40 1 4.4141 -1.7361 9.0157 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000594863213.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:00:47 Heat of formation + Delta-G solvation = -96.392322 kcal Electronic energy + Delta-G solvation = -25960.592751 eV Core-core repulsion = 22028.263625 eV Total energy + Delta-G solvation = -3932.329126 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 347.081 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -41.55819 -39.68077 -38.11374 -38.07606 -36.91127 -36.44522 -34.70186 -33.59374 -31.84010 -28.38554 -28.14888 -27.63410 -27.20290 -26.27766 -22.79720 -21.37180 -20.91207 -20.32613 -19.83193 -18.76436 -18.50611 -17.85823 -17.57985 -16.98856 -16.90633 -16.63910 -16.41692 -16.15855 -15.76378 -15.27779 -15.09107 -14.78475 -14.62587 -14.37297 -14.21646 -14.02224 -13.76559 -13.39117 -13.01655 -12.97528 -12.84682 -12.83146 -12.74622 -12.44397 -12.14928 -12.12425 -11.92100 -11.52602 -11.50717 -11.35855 -11.05976 -10.81369 -10.78302 -10.68577 -10.38063 -10.36758 -10.06159 -7.99615 -6.17802 -0.76069 -0.50274 0.14058 0.54051 0.72688 1.47817 1.48907 1.55252 1.90811 2.24160 2.42289 2.47144 2.83376 2.90118 3.23040 3.36171 3.57987 4.01773 4.11743 4.14798 4.20388 4.27075 4.47247 4.65344 4.66697 4.73867 4.92179 4.93302 5.05398 5.14342 5.45049 5.56309 5.69099 5.73436 5.95769 6.03710 6.12481 6.17220 6.38669 6.43561 6.87561 7.16602 7.50652 8.99788 Molecular weight = 347.08amu Principal moments of inertia in cm(-1) A = 0.017281 B = 0.002668 C = 0.002451 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1619.885545 B =10492.879077 C =11423.033090 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.070 3.930 3 C -0.161 4.161 4 C -0.517 4.517 5 H 0.065 0.935 6 C 0.018 3.982 7 N -0.908 5.908 8 Si 0.951 3.049 9 H -0.273 1.273 10 H -0.291 1.291 11 H -0.271 1.271 12 C -0.586 4.586 13 S 2.617 3.383 14 O -0.990 6.990 15 O -0.982 6.982 16 N -1.112 6.112 17 C 0.184 3.816 18 C -0.006 4.006 19 N -0.433 5.433 20 C -0.023 4.023 21 C 0.599 3.401 22 N -0.820 5.820 23 O -0.578 6.578 24 C -0.226 4.226 25 S 0.308 5.692 26 H 0.033 0.967 27 H 0.069 0.931 28 H 0.039 0.961 29 H 0.044 0.956 30 H 0.068 0.932 31 H 0.035 0.965 32 H 0.260 0.740 33 H 0.145 0.855 34 H 0.138 0.862 35 H 0.423 0.577 36 H 0.118 0.882 37 H 0.116 0.884 38 H 0.419 0.581 39 H 0.415 0.585 40 H 0.202 0.798 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.201 -6.138 18.095 20.793 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C 0.068 3.932 3 C -0.219 4.219 4 C -0.556 4.556 5 H 0.083 0.917 6 C -0.181 4.181 7 N -0.547 5.547 8 Si 0.778 3.222 9 H -0.199 1.199 10 H -0.217 1.217 11 H -0.196 1.196 12 C -0.719 4.719 13 S 2.714 3.286 14 O -0.980 6.980 15 O -0.971 6.971 16 N -0.873 5.873 17 C 0.056 3.944 18 C -0.286 4.286 19 N -0.150 5.150 20 C -0.159 4.159 21 C 0.381 3.619 22 N -0.383 5.383 23 O -0.458 6.458 24 C -0.369 4.369 25 S 0.565 5.435 26 H 0.052 0.948 27 H 0.088 0.912 28 H 0.058 0.942 29 H 0.063 0.937 30 H 0.086 0.914 31 H 0.054 0.946 32 H 0.070 0.930 33 H 0.163 0.837 34 H 0.157 0.843 35 H 0.259 0.741 36 H 0.136 0.864 37 H 0.134 0.866 38 H 0.251 0.749 39 H 0.248 0.752 40 H 0.219 0.781 Dipole moment (debyes) X Y Z Total from point charges 7.743 -4.419 18.444 20.486 hybrid contribution 0.230 -2.342 -1.012 2.561 sum 7.973 -6.761 17.431 20.326 Atomic orbital electron populations 1.22234 0.98036 1.00433 1.01340 1.17907 0.92126 0.92296 0.90918 1.22217 1.00100 0.98182 1.01407 1.21306 1.31579 1.12307 0.90387 0.91659 1.25652 0.95248 0.95633 1.01609 1.69937 1.37233 1.23700 1.23808 0.85719 0.78829 0.78684 0.79008 1.19875 1.21650 1.19569 1.30467 1.13084 1.13422 1.14955 1.04732 0.73517 0.74751 0.75582 1.93526 1.31366 1.86975 1.86137 1.93516 1.78337 1.39421 1.85847 1.55500 1.13973 1.70937 1.46864 1.20057 0.80649 1.03596 0.90121 1.26961 1.06733 0.92438 1.02458 1.66860 1.12990 1.18827 1.16316 1.20343 1.10800 0.95854 0.88879 1.17193 0.75581 0.84057 0.85040 1.43534 1.72560 1.08965 1.13196 1.90843 1.51726 1.86034 1.17214 1.27059 1.04883 0.96887 1.08086 1.83086 1.57825 1.06830 0.95762 0.94779 0.91227 0.94233 0.93657 0.91358 0.94581 0.93030 0.83686 0.84333 0.74140 0.86406 0.86581 0.74911 0.75229 0.78108 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -7.73 7.78 71.98 0.56 -7.17 16 2 C 0.07 3.14 0.52 -52.93 -0.03 3.11 16 3 C -0.16 -7.48 7.78 71.98 0.56 -6.92 16 4 C -0.52 -25.60 8.01 25.60 0.21 -25.39 16 5 H 0.07 3.07 7.74 -2.91 -0.02 3.05 16 6 C 0.02 0.92 5.15 84.66 0.44 1.36 16 7 N -0.91 -49.00 9.35 21.45 0.20 -48.80 16 8 Si 0.95 40.86 29.54 68.60 2.03 42.89 16 9 H -0.27 -11.48 7.11 99.48 0.71 -10.77 16 10 H -0.29 -12.57 7.11 99.48 0.71 -11.86 16 11 H -0.27 -11.25 7.11 99.48 0.71 -10.54 16 12 C -0.59 -19.56 5.01 71.98 0.36 -19.20 16 13 S 2.62 82.43 4.49 -56.49 -0.25 82.17 16 14 O -0.99 -37.61 15.70 -127.65 -2.00 -39.61 16 15 O -0.98 -35.05 15.12 -127.65 -1.93 -36.98 16 16 N -1.11 -23.58 5.88 -190.80 -1.12 -24.70 16 17 C 0.18 3.10 6.70 85.63 0.57 3.68 16 18 C -0.01 -0.10 6.74 88.58 0.60 0.50 16 19 N -0.43 -7.85 10.12 -180.83 -1.83 -9.68 16 20 C -0.02 -0.43 6.70 40.56 0.27 -0.15 16 21 C 0.60 12.23 8.07 86.62 0.70 12.93 16 22 N -0.82 -11.10 8.87 -175.98 -1.56 -12.66 16 23 O -0.58 -15.42 17.55 -4.14 -0.07 -15.50 16 24 C -0.23 -3.51 10.62 67.12 0.71 -2.80 16 25 S 0.31 3.99 22.92 -56.49 -1.29 2.69 16 26 H 0.03 1.53 5.46 -2.39 -0.01 1.52 16 27 H 0.07 3.66 6.07 -2.39 -0.01 3.65 16 28 H 0.04 1.78 8.14 -2.39 -0.02 1.76 16 29 H 0.04 1.95 8.14 -2.39 -0.02 1.93 16 30 H 0.07 3.54 6.07 -2.39 -0.01 3.52 16 31 H 0.04 1.57 5.46 -2.38 -0.01 1.56 16 32 H 0.26 13.57 8.31 -92.71 -0.77 12.80 16 33 H 0.15 4.01 8.14 -2.39 -0.02 3.99 16 34 H 0.14 4.13 8.14 -2.39 -0.02 4.11 16 35 H 0.42 7.96 8.61 -96.74 -0.83 7.13 16 36 H 0.12 1.58 8.14 -2.39 -0.02 1.56 16 37 H 0.12 1.73 7.70 -2.39 -0.02 1.71 16 38 H 0.42 4.66 8.35 -92.71 -0.77 3.89 16 39 H 0.42 4.10 8.93 -92.70 -0.83 3.27 16 40 H 0.20 2.61 8.03 -2.91 -0.02 2.59 16 Total: -1.00 -71.18 355.36 -4.19 -75.37 By element: Atomic # 1 Polarization: 26.17 SS G_CDS: -1.30 Total: 24.87 kcal Atomic # 6 Polarization: -45.01 SS G_CDS: 4.95 Total: -40.06 kcal Atomic # 7 Polarization: -91.53 SS G_CDS: -4.31 Total: -95.84 kcal Atomic # 8 Polarization: -88.08 SS G_CDS: -4.01 Total: -92.09 kcal Atomic # 14 Polarization: 40.86 SS G_CDS: 2.03 Total: 42.89 kcal Atomic # 16 Polarization: 86.42 SS G_CDS: -1.55 Total: 84.87 kcal Total: -71.18 -4.19 -75.37 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000594863213.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -21.019 kcal (2) G-P(sol) polarization free energy of solvation -71.179 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -92.199 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.194 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.373 kcal (6) G-S(sol) free energy of system = (1) + (5) -96.392 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds