Wall clock time and date at job start Wed Apr 1 2020 04:10:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46506 * 1 3 3 S 1.65598 * 119.99875 * 2 1 4 4 O 1.42094 * 106.40159 * 178.53954 * 3 2 1 5 5 O 1.42104 * 106.40015 * 311.45745 * 3 2 1 6 6 C 1.76196 * 107.22183 * 64.99602 * 3 2 1 7 7 C 1.38239 * 119.99958 * 269.73063 * 6 3 2 8 8 C 1.38236 * 119.99654 * 179.76350 * 7 6 3 9 9 C 1.38234 * 120.00283 * 0.48496 * 8 7 6 10 10 C 1.50703 * 120.00197 * 179.76805 * 9 8 7 11 11 S 1.81398 * 109.46860 * 270.02021 * 10 9 8 12 12 O 1.42103 * 108.58002 * 294.48477 * 11 10 9 13 13 O 1.42102 * 108.57772 * 65.51369 * 11 10 9 14 14 C 1.81405 * 101.91837 * 179.97438 * 11 10 9 15 15 C 1.53006 * 109.46777 * 180.02562 * 14 11 10 16 16 C 1.50700 * 109.46898 * 180.02562 * 15 14 11 17 17 H 1.08007 * 120.00183 * 359.97438 * 16 15 14 18 18 C 1.37871 * 120.00232 * 180.02562 * 16 15 14 19 19 N 1.31513 * 119.99835 * 359.97438 * 18 16 15 20 20 Si 1.86804 * 120.00434 * 180.02562 * 18 16 15 21 21 H 1.48500 * 109.47104 * 59.99563 * 20 18 16 22 22 H 1.48497 * 109.47503 * 180.02562 * 20 18 16 23 23 H 1.48507 * 109.46831 * 300.00266 * 20 18 16 24 24 C 1.38234 * 119.99937 * 359.78933 * 9 8 7 25 25 C 1.38235 * 119.99902 * 359.95289 * 24 9 8 26 26 H 1.09001 * 109.47060 * 60.00757 * 1 2 3 27 27 H 1.09004 * 109.47073 * 180.02562 * 1 2 3 28 28 H 1.09000 * 109.47212 * 300.00329 * 1 2 3 29 29 H 0.96997 * 119.99787 * 179.97438 * 2 1 3 30 30 H 1.07995 * 120.00109 * 359.97438 * 7 6 3 31 31 H 1.08002 * 119.99542 * 180.24917 * 8 7 6 32 32 H 1.08998 * 109.46762 * 30.01904 * 10 9 8 33 33 H 1.08994 * 109.47099 * 150.02448 * 10 9 8 34 34 H 1.08999 * 109.47055 * 300.00146 * 14 11 10 35 35 H 1.08998 * 109.47153 * 60.00368 * 14 11 10 36 36 H 1.08999 * 109.47366 * 299.99856 * 15 14 11 37 37 H 1.08998 * 109.47060 * 60.00211 * 15 14 11 38 38 H 0.97008 * 120.00367 * 180.02562 * 19 18 16 39 39 H 1.07994 * 120.00184 * 179.97438 * 24 9 8 40 40 H 1.07998 * 119.99963 * 180.02562 * 25 24 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 16 2.2930 1.4341 0.0000 4 8 3.6737 1.1003 0.0347 5 8 1.7120 2.2329 -1.0217 6 6 1.9378 2.2416 1.5252 7 6 0.8621 3.1051 1.6160 8 6 0.5805 3.7348 2.8140 9 6 1.3805 3.5088 3.9184 10 6 1.0766 4.1993 5.2230 11 16 1.9568 5.7841 5.2876 12 8 3.3538 5.5254 5.3163 13 8 1.4295 6.6362 4.2800 14 6 1.4539 6.4262 6.9079 15 6 2.1118 7.7874 7.1436 16 6 1.6945 8.3205 8.4900 17 1 1.0265 7.7462 9.1149 18 6 2.1646 9.5419 8.9237 19 7 2.9776 10.2415 8.1626 20 14 1.6480 10.2025 10.5929 21 1 2.0762 9.2559 11.6540 22 1 2.2854 11.5241 10.8212 23 1 0.1710 10.3527 10.6302 24 6 2.4595 2.6497 3.8261 25 6 2.7380 2.0158 2.6296 26 1 -0.3633 0.5137 -0.8901 27 1 -0.3633 -1.0277 0.0005 28 1 -0.3634 0.5139 0.8899 29 1 1.9500 -0.8400 0.0004 30 1 0.2397 3.2851 0.7520 31 1 -0.2623 4.4063 2.8860 32 1 0.0038 4.3761 5.2992 33 1 1.4009 3.5697 6.0515 34 1 0.3699 6.5376 6.9341 35 1 1.7667 5.7313 7.6872 36 1 3.1958 7.6764 7.1173 37 1 1.7986 8.4821 6.3644 38 1 3.3087 11.1007 8.4678 39 1 3.0848 2.4734 4.6888 40 1 3.5807 1.3443 2.5576 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000596037425.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:10:38 Heat of formation + Delta-G solvation = -124.097843 kcal Electronic energy + Delta-G solvation = -25421.811964 eV Core-core repulsion = 21455.988685 eV Total energy + Delta-G solvation = -3965.823279 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 347.074 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -39.73042 -37.56933 -36.60378 -36.17709 -35.64462 -35.44702 -33.95082 -33.57160 -31.41972 -31.25363 -28.12629 -26.46813 -25.65323 -23.26104 -22.69774 -21.41607 -19.96088 -18.59815 -18.41761 -17.89110 -17.08111 -16.76127 -16.31659 -16.11506 -15.89896 -15.49340 -15.10559 -14.96370 -14.63767 -14.56098 -14.21480 -13.91188 -13.55880 -13.42445 -13.26077 -12.91913 -12.71558 -12.51567 -12.40916 -12.33848 -12.04598 -11.82653 -11.71081 -11.63107 -11.51832 -11.34997 -11.10714 -11.02038 -11.00172 -10.45612 -10.42413 -10.11059 -9.80638 -9.45894 -9.37941 -9.12607 -8.53445 -6.15453 -4.22103 -0.08998 0.11298 0.63655 0.96504 2.61066 3.06943 3.13654 3.24365 3.29578 3.31019 3.43074 3.76762 3.97960 4.09525 4.27826 4.35765 4.47470 4.52947 4.55861 4.82895 4.95074 4.95410 5.09590 5.14880 5.19371 5.24991 5.28610 5.37982 5.52622 5.58497 5.59668 5.71900 5.76231 6.03025 6.38727 6.43577 6.45528 7.28218 7.33436 7.76213 8.12204 8.81098 9.42687 10.95287 Molecular weight = 347.07amu Principal moments of inertia in cm(-1) A = 0.035753 B = 0.002072 C = 0.002054 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 782.960852 B =13507.269187 C =13627.351401 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.082 3.918 2 N -1.121 6.121 3 S 2.699 3.301 4 O -0.956 6.956 5 O -0.953 6.953 6 C -0.680 4.680 7 C -0.020 4.020 8 C -0.127 4.127 9 C -0.022 4.022 10 C -0.598 4.598 11 S 2.394 3.606 12 O -0.935 6.935 13 O -0.935 6.935 14 C -0.568 4.568 15 C 0.028 3.972 16 C -0.524 4.524 17 H 0.061 0.939 18 C 0.058 3.942 19 N -0.888 5.888 20 Si 0.901 3.099 21 H -0.275 1.275 22 H -0.285 1.285 23 H -0.275 1.275 24 C -0.127 4.127 25 C -0.016 4.016 26 H 0.070 0.930 27 H 0.083 0.917 28 H 0.061 0.939 29 H 0.419 0.581 30 H 0.146 0.854 31 H 0.143 0.857 32 H 0.145 0.855 33 H 0.145 0.855 34 H 0.122 0.878 35 H 0.122 0.878 36 H 0.036 0.964 37 H 0.036 0.964 38 H 0.266 0.734 39 H 0.143 0.857 40 H 0.146 0.854 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.745 -23.876 -12.639 28.103 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 N -0.881 5.881 3 S 2.787 3.213 4 O -0.947 6.947 5 O -0.943 6.943 6 C -0.767 4.767 7 C -0.039 4.039 8 C -0.147 4.147 9 C -0.023 4.023 10 C -0.721 4.721 11 S 2.578 3.422 12 O -0.932 6.932 13 O -0.932 6.932 14 C -0.701 4.701 15 C -0.010 4.010 16 C -0.563 4.563 17 H 0.079 0.921 18 C -0.145 4.145 19 N -0.526 5.526 20 Si 0.728 3.272 21 H -0.201 1.201 22 H -0.210 1.210 23 H -0.201 1.201 24 C -0.147 4.147 25 C -0.035 4.035 26 H 0.088 0.912 27 H 0.102 0.898 28 H 0.079 0.921 29 H 0.253 0.747 30 H 0.164 0.836 31 H 0.161 0.839 32 H 0.163 0.837 33 H 0.163 0.837 34 H 0.140 0.860 35 H 0.140 0.860 36 H 0.054 0.946 37 H 0.054 0.946 38 H 0.076 0.924 39 H 0.161 0.839 40 H 0.163 0.837 Dipole moment (debyes) X Y Z Total from point charges -6.694 -22.904 -13.987 27.659 hybrid contribution -0.989 -0.243 2.382 2.591 sum -7.683 -23.147 -11.605 27.009 Atomic orbital electron populations 1.21520 0.78360 1.04335 1.02215 1.55337 1.16269 1.24410 1.92080 1.01808 0.72898 0.72693 0.73854 1.93605 1.30596 1.83341 1.87111 1.93598 1.78689 1.68314 1.53729 1.30911 1.07670 1.16407 1.21721 1.20936 0.93558 0.91480 0.97926 1.21337 1.00634 1.00337 0.92367 1.19390 0.94824 0.95076 0.93035 1.29762 1.16344 1.23868 1.02100 1.09095 0.76675 0.76452 0.79973 1.93557 1.27859 1.84365 1.87415 1.93556 1.80846 1.62269 1.56526 1.30225 1.11249 1.11698 1.16971 1.19003 0.96373 0.86201 0.99448 1.20957 1.29817 1.04031 1.01521 0.92056 1.25074 0.94886 0.96728 0.97788 1.69948 1.31940 1.13589 1.37138 0.86514 0.78835 0.78219 0.83594 1.20064 1.21038 1.20068 1.21340 0.97265 0.96982 0.99098 1.20907 0.95960 0.95821 0.90838 0.91153 0.89836 0.92058 0.74691 0.83634 0.83934 0.83677 0.83688 0.85989 0.85993 0.94567 0.94558 0.92395 0.83947 0.83664 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.32 11.14 59.85 0.67 0.99 16 2 N -1.12 -6.17 6.19 -16.63 -0.10 -6.28 16 3 S 2.70 25.66 5.74 -107.50 -0.62 25.04 16 4 O -0.96 -11.62 17.28 -57.17 -0.99 -12.61 16 5 O -0.95 -11.66 17.00 -57.17 -0.97 -12.63 16 6 C -0.68 -7.05 5.95 -39.58 -0.24 -7.29 16 7 C -0.02 -0.20 9.52 -39.58 -0.38 -0.58 16 8 C -0.13 -1.42 9.70 -39.58 -0.38 -1.81 16 9 C -0.02 -0.26 5.14 -104.62 -0.54 -0.80 16 10 C -0.60 -6.31 5.93 36.01 0.21 -6.09 16 11 S 2.39 39.41 4.70 -107.50 -0.51 38.91 16 12 O -0.93 -18.46 18.10 -57.83 -1.05 -19.51 16 13 O -0.93 -18.43 18.10 -57.83 -1.05 -19.47 16 14 C -0.57 -9.98 5.74 37.16 0.21 -9.77 16 15 C 0.03 0.71 4.98 -27.88 -0.14 0.57 16 16 C -0.52 -14.15 9.11 -34.44 -0.31 -14.47 16 17 H 0.06 1.54 7.74 -52.48 -0.41 1.14 16 18 C 0.06 1.62 5.46 -17.82 -0.10 1.53 16 19 N -0.89 -26.24 13.29 55.43 0.74 -25.50 16 20 Si 0.90 20.86 29.54 -169.99 -5.02 15.83 16 21 H -0.28 -6.21 7.11 56.52 0.40 -5.81 16 22 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 23 H -0.28 -6.21 7.11 56.52 0.40 -5.80 16 24 C -0.13 -1.45 9.70 -39.58 -0.38 -1.83 16 25 C -0.02 -0.17 9.52 -39.58 -0.38 -0.55 16 26 H 0.07 0.29 8.10 -51.93 -0.42 -0.13 16 27 H 0.08 0.14 8.14 -51.93 -0.42 -0.28 16 28 H 0.06 0.21 8.14 -51.93 -0.42 -0.22 16 29 H 0.42 1.44 8.96 -34.47 -0.31 1.13 16 30 H 0.15 1.18 7.61 -52.49 -0.40 0.78 16 31 H 0.14 1.32 8.06 -52.49 -0.42 0.90 16 32 H 0.15 1.09 8.09 -51.93 -0.42 0.67 16 33 H 0.14 1.10 8.08 -51.93 -0.42 0.68 16 34 H 0.12 1.82 8.14 -51.92 -0.42 1.40 16 35 H 0.12 1.82 8.14 -51.92 -0.42 1.40 16 36 H 0.04 0.96 8.14 -51.93 -0.42 0.54 16 37 H 0.04 0.97 8.14 -51.93 -0.42 0.54 16 38 H 0.27 7.38 8.31 -40.82 -0.34 7.04 16 39 H 0.14 1.35 8.06 -52.49 -0.42 0.93 16 40 H 0.15 1.22 7.62 -52.49 -0.40 0.82 16 LS Contribution 372.63 15.07 5.62 5.62 Total: -1.00 -40.12 372.63 -10.99 -51.11 By element: Atomic # 1 Polarization: 4.87 SS G_CDS: -5.29 Total: -0.42 kcal Atomic # 6 Polarization: -38.34 SS G_CDS: -1.75 Total: -40.09 kcal Atomic # 7 Polarization: -32.41 SS G_CDS: 0.63 Total: -31.78 kcal Atomic # 8 Polarization: -60.17 SS G_CDS: -4.05 Total: -64.22 kcal Atomic # 14 Polarization: 20.86 SS G_CDS: -5.02 Total: 15.83 kcal Atomic # 16 Polarization: 65.07 SS G_CDS: -1.12 Total: 63.95 kcal Total LS contribution 5.62 Total: 5.62 kcal Total: -40.12 -10.99 -51.11 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000596037425.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -72.986 kcal (2) G-P(sol) polarization free energy of solvation -40.122 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -113.107 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.991 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -51.112 kcal (6) G-S(sol) free energy of system = (1) + (5) -124.098 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds