Wall clock time and date at job start Wed Apr 1 2020 04:10:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46506 * 1 3 3 S 1.65598 * 119.99875 * 2 1 4 4 O 1.42094 * 106.40159 * 178.53954 * 3 2 1 5 5 O 1.42104 * 106.40015 * 311.45745 * 3 2 1 6 6 C 1.76196 * 107.22183 * 64.99602 * 3 2 1 7 7 C 1.38239 * 119.99958 * 269.73063 * 6 3 2 8 8 C 1.38236 * 119.99654 * 179.76350 * 7 6 3 9 9 C 1.38234 * 120.00283 * 0.48496 * 8 7 6 10 10 C 1.50703 * 120.00197 * 179.76805 * 9 8 7 11 11 S 1.81398 * 109.46860 * 270.02021 * 10 9 8 12 12 O 1.42103 * 108.58002 * 294.48477 * 11 10 9 13 13 O 1.42102 * 108.57772 * 65.51369 * 11 10 9 14 14 C 1.81405 * 101.91837 * 179.97438 * 11 10 9 15 15 C 1.53006 * 109.46777 * 180.02562 * 14 11 10 16 16 C 1.50700 * 109.46898 * 180.02562 * 15 14 11 17 17 H 1.08007 * 120.00183 * 359.97438 * 16 15 14 18 18 C 1.37871 * 120.00232 * 180.02562 * 16 15 14 19 19 N 1.31513 * 119.99835 * 359.97438 * 18 16 15 20 20 Si 1.86804 * 120.00434 * 180.02562 * 18 16 15 21 21 H 1.48500 * 109.47104 * 59.99563 * 20 18 16 22 22 H 1.48497 * 109.47503 * 180.02562 * 20 18 16 23 23 H 1.48507 * 109.46831 * 300.00266 * 20 18 16 24 24 C 1.38234 * 119.99937 * 359.78933 * 9 8 7 25 25 C 1.38235 * 119.99902 * 359.95289 * 24 9 8 26 26 H 1.09001 * 109.47060 * 60.00757 * 1 2 3 27 27 H 1.09004 * 109.47073 * 180.02562 * 1 2 3 28 28 H 1.09000 * 109.47212 * 300.00329 * 1 2 3 29 29 H 0.96997 * 119.99787 * 179.97438 * 2 1 3 30 30 H 1.07995 * 120.00109 * 359.97438 * 7 6 3 31 31 H 1.08002 * 119.99542 * 180.24917 * 8 7 6 32 32 H 1.08998 * 109.46762 * 30.01904 * 10 9 8 33 33 H 1.08994 * 109.47099 * 150.02448 * 10 9 8 34 34 H 1.08999 * 109.47055 * 300.00146 * 14 11 10 35 35 H 1.08998 * 109.47153 * 60.00368 * 14 11 10 36 36 H 1.08999 * 109.47366 * 299.99856 * 15 14 11 37 37 H 1.08998 * 109.47060 * 60.00211 * 15 14 11 38 38 H 0.97008 * 120.00367 * 180.02562 * 19 18 16 39 39 H 1.07994 * 120.00184 * 179.97438 * 24 9 8 40 40 H 1.07998 * 119.99963 * 180.02562 * 25 24 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 16 2.2930 1.4341 0.0000 4 8 3.6737 1.1003 0.0347 5 8 1.7120 2.2329 -1.0217 6 6 1.9378 2.2416 1.5252 7 6 0.8621 3.1051 1.6160 8 6 0.5805 3.7348 2.8140 9 6 1.3805 3.5088 3.9184 10 6 1.0766 4.1993 5.2230 11 16 1.9568 5.7841 5.2876 12 8 3.3538 5.5254 5.3163 13 8 1.4295 6.6362 4.2800 14 6 1.4539 6.4262 6.9079 15 6 2.1118 7.7874 7.1436 16 6 1.6945 8.3205 8.4900 17 1 1.0265 7.7462 9.1149 18 6 2.1646 9.5419 8.9237 19 7 2.9776 10.2415 8.1626 20 14 1.6480 10.2025 10.5929 21 1 2.0762 9.2559 11.6540 22 1 2.2854 11.5241 10.8212 23 1 0.1710 10.3527 10.6302 24 6 2.4595 2.6497 3.8261 25 6 2.7380 2.0158 2.6296 26 1 -0.3633 0.5137 -0.8901 27 1 -0.3633 -1.0277 0.0005 28 1 -0.3634 0.5139 0.8899 29 1 1.9500 -0.8400 0.0004 30 1 0.2397 3.2851 0.7520 31 1 -0.2623 4.4063 2.8860 32 1 0.0038 4.3761 5.2992 33 1 1.4009 3.5697 6.0515 34 1 0.3699 6.5376 6.9341 35 1 1.7667 5.7313 7.6872 36 1 3.1958 7.6764 7.1173 37 1 1.7986 8.4821 6.3644 38 1 3.3087 11.1007 8.4678 39 1 3.0848 2.4734 4.6888 40 1 3.5807 1.3443 2.5576 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000596037425.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:10:37 Heat of formation + Delta-G solvation = -157.598082 kcal Electronic energy + Delta-G solvation = -25423.264643 eV Core-core repulsion = 21455.988685 eV Total energy + Delta-G solvation = -3967.275958 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 347.074 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -40.52727 -38.42543 -38.01241 -37.05138 -37.03606 -35.90794 -35.87345 -34.42170 -33.12959 -32.20540 -29.05164 -27.52163 -26.83994 -24.05407 -23.92456 -22.90314 -20.65475 -19.89640 -19.15926 -18.87105 -18.62158 -17.56171 -17.48357 -17.25613 -17.11320 -16.54135 -16.45506 -16.16155 -15.72555 -15.43232 -15.15799 -14.67864 -14.63459 -14.48053 -14.20907 -13.80609 -13.74582 -13.73499 -13.49438 -13.29724 -13.22217 -13.13552 -13.06013 -12.88584 -12.76685 -12.55094 -12.33927 -12.30486 -12.19733 -12.12000 -11.95909 -11.68164 -11.07334 -10.63889 -10.57000 -10.21544 -10.17376 -8.25554 -6.40436 -1.20696 -0.69950 -0.26076 0.16412 1.40962 1.44737 1.52898 1.85849 1.94781 2.32661 2.37995 2.64086 2.72859 3.03760 3.07977 3.22508 3.28065 3.60555 3.81547 3.98435 4.05486 4.18773 4.19581 4.24310 4.36200 4.41536 4.60361 4.67943 4.80561 4.83511 4.87708 4.95177 4.95673 5.02140 5.20484 5.30043 5.30289 5.67024 5.68849 6.05385 6.09601 6.74641 7.30103 8.86540 Molecular weight = 347.07amu Principal moments of inertia in cm(-1) A = 0.035753 B = 0.002072 C = 0.002054 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 782.960852 B =13507.269187 C =13627.351401 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.070 3.930 2 N -1.106 6.106 3 S 2.718 3.282 4 O -0.986 6.986 5 O -0.983 6.983 6 C -0.680 4.680 7 C -0.030 4.030 8 C -0.137 4.137 9 C -0.049 4.049 10 C -0.555 4.555 11 S 2.391 3.609 12 O -0.982 6.982 13 O -0.981 6.981 14 C -0.572 4.572 15 C 0.018 3.982 16 C -0.539 4.539 17 H 0.082 0.918 18 C -0.008 4.008 19 N -0.937 5.937 20 Si 0.976 3.024 21 H -0.261 1.261 22 H -0.287 1.287 23 H -0.261 1.261 24 C -0.138 4.138 25 C -0.029 4.029 26 H 0.067 0.933 27 H 0.111 0.889 28 H 0.069 0.931 29 H 0.431 0.569 30 H 0.164 0.836 31 H 0.160 0.840 32 H 0.187 0.813 33 H 0.186 0.814 34 H 0.152 0.848 35 H 0.152 0.848 36 H 0.001 0.999 37 H 0.002 0.998 38 H 0.266 0.734 39 H 0.158 0.842 40 H 0.161 0.839 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.151 -26.683 -11.446 30.757 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.076 4.076 2 N -0.870 5.870 3 S 2.806 3.194 4 O -0.976 6.976 5 O -0.973 6.973 6 C -0.768 4.768 7 C -0.049 4.049 8 C -0.156 4.156 9 C -0.050 4.050 10 C -0.684 4.684 11 S 2.581 3.419 12 O -0.979 6.979 13 O -0.978 6.978 14 C -0.703 4.703 15 C -0.020 4.020 16 C -0.578 4.578 17 H 0.100 0.900 18 C -0.207 4.207 19 N -0.577 5.577 20 Si 0.799 3.201 21 H -0.186 1.186 22 H -0.213 1.213 23 H -0.186 1.186 24 C -0.158 4.158 25 C -0.048 4.048 26 H 0.086 0.914 27 H 0.129 0.871 28 H 0.087 0.913 29 H 0.268 0.732 30 H 0.181 0.819 31 H 0.177 0.823 32 H 0.205 0.795 33 H 0.204 0.796 34 H 0.170 0.830 35 H 0.170 0.830 36 H 0.020 0.980 37 H 0.020 0.980 38 H 0.075 0.925 39 H 0.176 0.824 40 H 0.179 0.821 Dipole moment (debyes) X Y Z Total from point charges -9.074 -25.652 -12.763 30.054 hybrid contribution -0.292 0.438 1.873 1.946 sum -9.367 -25.214 -10.890 29.018 Atomic orbital electron populations 1.21810 0.76906 1.06316 1.02544 1.54979 1.17058 1.23389 1.91578 1.01056 0.72146 0.72976 0.73205 1.93559 1.32798 1.83887 1.87406 1.93560 1.79067 1.69769 1.54889 1.31067 1.07542 1.16339 1.21825 1.21245 0.93858 0.91260 0.98524 1.21687 1.01188 1.00335 0.92416 1.19615 0.95664 0.96048 0.93707 1.29371 1.17494 1.18146 1.03413 1.08684 0.76196 0.78471 0.78533 1.93497 1.31267 1.85677 1.87436 1.93497 1.81204 1.65792 1.57323 1.30104 1.12490 1.08152 1.19601 1.18822 0.94965 0.90111 0.98089 1.21550 1.29478 1.04320 1.02457 0.90033 1.26191 0.94867 0.97357 1.02236 1.70122 1.33796 1.14145 1.39593 0.85333 0.78973 0.77356 0.78394 1.18568 1.21310 1.18556 1.21677 0.97263 0.96880 0.99953 1.21202 0.96526 0.96222 0.90812 0.91433 0.87056 0.91267 0.73244 0.81892 0.82266 0.79498 0.79600 0.82956 0.82996 0.98032 0.97995 0.92491 0.82432 0.82121 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.37 11.14 127.77 1.42 1.80 16 2 N -1.11 -10.04 6.19 -206.52 -1.28 -11.32 16 3 S 2.72 49.15 5.74 -56.49 -0.32 48.82 16 4 O -0.99 -23.50 17.28 -128.00 -2.21 -25.71 16 5 O -0.98 -23.50 17.00 -128.00 -2.18 -25.68 16 6 C -0.68 -13.19 5.95 22.27 0.13 -13.06 16 7 C -0.03 -0.57 9.52 22.27 0.21 -0.36 16 8 C -0.14 -2.74 9.70 22.27 0.22 -2.52 16 9 C -0.05 -1.03 5.14 -19.87 -0.10 -1.13 16 10 C -0.55 -9.50 5.93 71.24 0.42 -9.08 16 11 S 2.39 77.53 4.70 -56.49 -0.27 77.27 16 12 O -0.98 -39.68 18.10 -127.37 -2.31 -41.99 16 13 O -0.98 -39.52 18.10 -127.37 -2.30 -41.82 16 14 C -0.57 -19.49 5.74 71.98 0.41 -19.08 16 15 C 0.02 0.96 4.98 29.85 0.15 1.10 16 16 C -0.54 -29.34 9.11 25.60 0.23 -29.11 16 17 H 0.08 3.98 7.74 -2.91 -0.02 3.95 16 18 C -0.01 -0.47 5.46 84.65 0.46 -0.01 16 19 N -0.94 -57.59 13.29 21.44 0.28 -57.31 16 20 Si 0.98 42.77 29.54 68.60 2.03 44.80 16 21 H -0.26 -10.77 7.11 99.48 0.71 -10.06 16 22 H -0.29 -12.58 7.11 99.48 0.71 -11.87 16 23 H -0.26 -10.75 7.11 99.48 0.71 -10.05 16 24 C -0.14 -2.84 9.70 22.27 0.22 -2.62 16 25 C -0.03 -0.56 9.52 22.27 0.21 -0.35 16 26 H 0.07 0.43 8.10 -2.39 -0.02 0.41 16 27 H 0.11 0.01 8.14 -2.38 -0.02 -0.01 16 28 H 0.07 0.28 8.14 -2.39 -0.02 0.27 16 29 H 0.43 2.05 8.96 -96.75 -0.87 1.18 16 30 H 0.16 2.38 7.61 -2.91 -0.02 2.36 16 31 H 0.16 2.53 8.06 -2.91 -0.02 2.50 16 32 H 0.19 1.74 8.09 -2.39 -0.02 1.72 16 33 H 0.19 1.77 8.08 -2.39 -0.02 1.75 16 34 H 0.15 4.16 8.14 -2.39 -0.02 4.14 16 35 H 0.15 4.16 8.14 -2.39 -0.02 4.14 16 36 H 0.00 0.08 8.14 -2.39 -0.02 0.06 16 37 H 0.00 0.10 8.14 -2.39 -0.02 0.08 16 38 H 0.27 15.36 8.31 -92.70 -0.77 14.59 16 39 H 0.16 2.61 8.06 -2.91 -0.02 2.59 16 40 H 0.16 2.50 7.62 -2.91 -0.02 2.48 16 Total: -1.00 -92.73 372.63 -4.37 -97.10 By element: Atomic # 1 Polarization: 10.04 SS G_CDS: 0.19 Total: 10.24 kcal Atomic # 6 Polarization: -78.39 SS G_CDS: 3.99 Total: -74.40 kcal Atomic # 7 Polarization: -67.64 SS G_CDS: -0.99 Total: -68.63 kcal Atomic # 8 Polarization: -126.20 SS G_CDS: -9.00 Total: -135.20 kcal Atomic # 14 Polarization: 42.77 SS G_CDS: 2.03 Total: 44.80 kcal Atomic # 16 Polarization: 126.68 SS G_CDS: -0.59 Total: 126.09 kcal Total: -92.73 -4.37 -97.10 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000596037425.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -60.493 kcal (2) G-P(sol) polarization free energy of solvation -92.735 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -153.228 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.370 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -97.105 kcal (6) G-S(sol) free energy of system = (1) + (5) -157.598 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds