Wall clock time and date at job start Wed Apr 1 2020 04:10:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46497 * 1 3 3 C 1.46504 * 119.99904 * 2 1 4 4 S 1.65606 * 120.00376 * 179.97438 * 2 1 3 5 5 O 1.42102 * 106.40077 * 341.25107 * 4 2 1 6 6 O 1.42098 * 106.40327 * 208.33311 * 4 2 1 7 7 N 1.65605 * 107.21689 * 94.78816 * 4 2 1 8 8 C 1.36930 * 119.99972 * 272.77265 * 7 4 2 9 9 H 1.08001 * 120.00067 * 2.28118 * 8 7 4 10 10 C 1.38808 * 120.00036 * 182.28509 * 8 7 4 11 11 N 1.31621 * 119.99938 * 4.57659 * 10 8 7 12 12 Si 1.86802 * 120.00194 * 184.57805 * 10 8 7 13 13 H 1.48503 * 109.47345 * 89.99943 * 12 10 8 14 14 H 1.48504 * 109.47018 * 209.99695 * 12 10 8 15 15 H 1.48498 * 109.47042 * 329.99446 * 12 10 8 16 16 C 1.46497 * 119.99612 * 92.77221 * 7 4 2 17 17 C 1.50692 * 109.47312 * 9.88851 * 16 7 4 18 18 C 1.38268 * 119.97623 * 263.09106 * 17 16 7 19 19 C 1.38174 * 120.03030 * 179.74553 * 18 17 16 20 20 C 1.38484 * 119.97209 * 0.25935 * 19 18 17 21 21 F 1.35101 * 120.02713 * 179.97438 * 20 19 18 22 22 C 1.38436 * 119.94628 * 359.97438 * 20 19 18 23 23 C 1.38213 * 119.97732 * 359.97438 * 22 20 19 24 24 N 1.48010 * 119.98749 * 179.97438 * 23 22 20 25 25 O 1.21803 * 119.99730 * 353.07581 * 24 23 22 26 26 O 1.21795 * 119.99831 * 173.07491 * 24 23 22 27 27 H 1.09007 * 109.46789 * 269.99872 * 1 2 3 28 28 H 1.08995 * 109.47107 * 30.00201 * 1 2 3 29 29 H 1.09001 * 109.46865 * 150.00561 * 1 2 3 30 30 H 1.09004 * 109.46653 * 245.84176 * 3 2 1 31 31 H 1.08999 * 109.47096 * 5.83798 * 3 2 1 32 32 H 1.08997 * 109.47230 * 125.84158 * 3 2 1 33 33 H 0.97002 * 120.00217 * 185.00823 * 11 10 8 34 34 H 1.08994 * 109.47016 * 249.88152 * 16 7 4 35 35 H 1.09001 * 109.46676 * 129.88757 * 16 7 4 36 36 H 1.08001 * 119.98434 * 0.02665 * 18 17 16 37 37 H 1.07998 * 120.01626 * 180.28014 * 19 18 17 38 38 H 1.08006 * 120.00757 * 179.97438 * 22 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2688 0.0000 4 16 2.2931 -1.4341 0.0006 5 8 1.3759 -2.4269 0.4392 6 8 3.5328 -1.1814 0.6475 7 7 2.6526 -1.7933 -1.5755 8 6 1.7528 -2.4839 -2.3427 9 1 0.7938 -2.7622 -1.9313 10 6 2.0734 -2.8263 -3.6491 11 7 3.2742 -2.5673 -4.1216 12 14 0.8004 -3.6547 -4.7367 13 1 0.0205 -2.6200 -5.4623 14 1 1.4848 -4.5363 -5.7165 15 1 -0.1159 -4.4665 -3.8961 16 6 3.9331 -1.3721 -2.1490 17 6 4.8287 -0.8553 -1.0528 18 6 4.9096 0.5034 -0.8097 19 6 5.7264 0.9781 0.1987 20 6 6.4684 0.0927 0.9624 21 9 7.2678 0.5557 1.9482 22 6 6.3904 -1.2671 0.7149 23 6 5.5719 -1.7396 -0.2935 24 7 5.4887 -3.1934 -0.5587 25 8 6.2328 -3.9622 0.0235 26 8 4.6762 -3.6209 -1.3590 27 1 -0.3633 0.0000 1.0277 28 1 -0.3633 0.8899 -0.5138 29 1 -0.3633 -0.8901 -0.5138 30 1 2.7434 1.3731 -0.9377 31 1 1.4938 2.0946 0.1045 32 1 2.9003 1.2826 0.8330 33 1 3.4759 -2.7397 -5.0547 34 1 3.7615 -0.5826 -2.8805 35 1 4.4098 -2.2222 -2.6371 36 1 4.3305 1.1937 -1.4052 37 1 5.7859 2.0391 0.3913 38 1 6.9690 -1.9585 1.3097 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000596275822.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:10:32 Heat of formation + Delta-G solvation = -48.849489 kcal Electronic energy + Delta-G solvation = -31519.066326 eV Core-core repulsion = 27022.585635 eV Total energy + Delta-G solvation = -4496.480690 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 347.083 amu Computer time = 1.70 seconds Orbital eigenvalues (eV) -50.01144 -43.17365 -40.58695 -38.07204 -37.84668 -37.10135 -36.87716 -36.72491 -33.48790 -32.96410 -31.93006 -28.88772 -28.30463 -26.97867 -25.49395 -25.22433 -23.88345 -22.93994 -20.58438 -20.12950 -19.59539 -19.43374 -18.54842 -18.43616 -18.23155 -17.53950 -17.35421 -16.96543 -16.66934 -16.26927 -16.20661 -15.57428 -15.29620 -15.08880 -14.99096 -14.93687 -14.47328 -14.08861 -13.90315 -13.46946 -13.39091 -13.24848 -12.96506 -12.81882 -12.76239 -12.65342 -12.52513 -12.48852 -12.39341 -12.25619 -12.15804 -12.07513 -11.88137 -11.78382 -10.78422 -10.34557 -9.98987 -9.83258 -9.54954 -7.86007 -5.68377 -1.10513 -0.22156 -0.00229 0.42458 0.59131 1.50822 1.56700 1.63855 2.14306 2.32906 2.54890 2.80896 3.03898 3.27498 3.41852 3.47764 3.57309 3.78898 3.95312 4.02848 4.18787 4.50581 4.53540 4.58849 4.66294 4.76504 4.84218 4.88280 4.92662 5.01261 5.07207 5.16189 5.30660 5.32287 5.59753 5.65880 5.79478 6.12308 6.61466 6.68351 7.11499 7.48951 9.00145 Molecular weight = 347.08amu Principal moments of inertia in cm(-1) A = 0.012644 B = 0.006424 C = 0.005161 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2213.943669 B = 4357.305628 C = 5424.228533 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.092 3.908 2 N -1.019 6.019 3 C 0.077 3.923 4 S 2.748 3.252 5 O -1.030 7.030 6 O -0.992 6.992 7 N -0.850 5.850 8 C -0.312 4.312 9 H 0.090 0.910 10 C 0.007 3.993 11 N -0.902 5.902 12 Si 0.970 3.030 13 H -0.267 1.267 14 H -0.287 1.287 15 H -0.278 1.278 16 C 0.171 3.829 17 C -0.028 4.028 18 C -0.097 4.097 19 C -0.069 4.069 20 C 0.091 3.909 21 F -0.129 7.129 22 C -0.092 4.092 23 C 0.008 3.992 24 N 0.021 4.979 25 O -0.204 6.204 26 O -0.158 6.158 27 H 0.055 0.945 28 H 0.100 0.900 29 H 0.048 0.952 30 H 0.065 0.935 31 H 0.104 0.896 32 H 0.067 0.933 33 H 0.263 0.737 34 H 0.066 0.934 35 H 0.138 0.862 36 H 0.184 0.816 37 H 0.196 0.804 38 H 0.153 0.847 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.973 14.721 4.741 15.591 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.053 4.053 2 N -0.860 5.860 3 C -0.067 4.067 4 S 2.762 3.238 5 O -1.015 7.015 6 O -0.975 6.975 7 N -0.685 5.685 8 C -0.443 4.443 9 H 0.108 0.892 10 C -0.194 4.194 11 N -0.545 5.545 12 Si 0.796 3.204 13 H -0.192 1.192 14 H -0.213 1.213 15 H -0.203 1.203 16 C 0.046 3.954 17 C -0.032 4.032 18 C -0.116 4.116 19 C -0.088 4.088 20 C 0.070 3.930 21 F -0.108 7.108 22 C -0.112 4.112 23 C -0.077 4.077 24 N 0.530 4.470 25 O -0.410 6.410 26 O -0.370 6.370 27 H 0.074 0.926 28 H 0.118 0.882 29 H 0.067 0.933 30 H 0.084 0.916 31 H 0.122 0.878 32 H 0.086 0.914 33 H 0.074 0.926 34 H 0.084 0.916 35 H 0.155 0.845 36 H 0.201 0.799 37 H 0.213 0.787 38 H 0.171 0.829 Dipole moment (debyes) X Y Z Total from point charges 2.326 14.796 5.593 15.988 hybrid contribution -0.574 -1.325 -0.684 1.598 sum 1.752 13.471 4.909 14.444 Atomic orbital electron populations 1.21551 0.78427 1.03548 1.01795 1.58117 1.15530 1.22431 1.89931 1.22024 0.97616 0.85124 1.01955 1.02903 0.72593 0.73938 0.74348 1.93435 1.66340 1.59812 1.81893 1.93709 1.41816 1.86256 1.75743 1.53081 1.21560 1.64230 1.29660 1.19233 0.97254 1.32076 0.95703 0.89186 1.25550 0.97939 0.97907 0.98010 1.69890 1.18769 1.51191 1.14642 0.85274 0.78377 0.78430 0.78314 1.19239 1.21296 1.20341 1.20981 0.82546 1.02635 0.89282 1.20869 0.94497 0.95037 0.92822 1.21405 0.99474 0.92245 0.98432 1.21756 0.92420 1.02155 0.92448 1.17121 0.95125 0.90523 0.90217 1.91528 1.71353 1.88646 1.59266 1.20702 0.97960 0.96613 0.95971 1.20424 1.06274 0.77976 1.03070 1.44139 0.99202 1.04659 0.99009 1.94382 1.40587 1.55368 1.50686 1.94783 1.31450 1.82010 1.28806 0.92594 0.88180 0.93303 0.91618 0.87791 0.91439 0.92639 0.91594 0.84486 0.79884 0.78731 0.82904 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 46. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 2.57 10.26 127.77 1.31 3.88 16 2 N -1.02 -32.09 3.64 -562.68 -2.05 -34.14 16 3 C 0.08 1.65 9.08 127.77 1.16 2.81 16 4 S 2.75 117.41 5.84 -56.49 -0.33 117.08 16 5 O -1.03 -53.05 15.97 -128.00 -2.04 -55.09 16 6 O -0.99 -40.42 10.02 -128.00 -1.28 -41.70 16 7 N -0.85 -39.48 2.67 -347.21 -0.93 -40.41 16 8 C -0.31 -16.00 9.55 84.03 0.80 -15.20 16 9 H 0.09 4.74 7.28 -2.91 -0.02 4.71 16 10 C 0.01 0.34 5.44 84.86 0.46 0.80 16 11 N -0.90 -45.76 9.48 21.65 0.21 -45.55 16 12 Si 0.97 41.27 29.56 68.60 2.03 43.30 16 13 H -0.27 -10.63 7.11 99.48 0.71 -9.92 16 14 H -0.29 -12.30 7.11 99.48 0.71 -11.59 16 15 H -0.28 -12.03 7.11 99.48 0.71 -11.32 16 16 C 0.17 7.38 3.72 85.63 0.32 7.70 16 17 C -0.03 -1.00 3.04 -19.86 -0.06 -1.06 16 18 C -0.10 -2.41 6.32 22.26 0.14 -2.27 16 19 C -0.07 -1.42 9.96 22.31 0.22 -1.20 16 20 C 0.09 2.37 7.30 22.38 0.16 2.54 16 21 F -0.13 -3.15 17.27 44.97 0.78 -2.38 16 22 C -0.09 -3.04 9.15 22.31 0.20 -2.84 16 23 C 0.01 0.31 4.68 36.37 0.17 0.48 16 24 N 0.02 1.00 4.45 -46.49 -0.21 0.79 16 25 O -0.20 -9.29 18.47 18.88 0.35 -8.94 16 26 O -0.16 -8.29 14.82 18.89 0.28 -8.01 16 27 H 0.06 1.41 8.14 -2.38 -0.02 1.39 16 28 H 0.10 2.01 7.97 -2.39 -0.02 1.99 16 29 H 0.05 1.60 7.66 -2.39 -0.02 1.58 16 30 H 0.07 1.26 5.32 -2.38 -0.01 1.24 16 31 H 0.10 1.52 7.85 -2.39 -0.02 1.50 16 32 H 0.07 1.38 7.48 -2.39 -0.02 1.36 16 33 H 0.26 12.81 8.32 -92.71 -0.77 12.03 16 34 H 0.07 2.71 7.77 -2.39 -0.02 2.70 16 35 H 0.14 6.88 3.69 -2.39 -0.01 6.87 16 36 H 0.18 3.26 6.02 -2.91 -0.02 3.25 16 37 H 0.20 2.02 8.06 -2.91 -0.02 1.99 16 38 H 0.15 4.80 7.63 -2.91 -0.02 4.77 16 Total: -1.00 -69.66 325.18 2.82 -66.83 By element: Atomic # 1 Polarization: 11.43 SS G_CDS: 1.13 Total: 12.57 kcal Atomic # 6 Polarization: -9.24 SS G_CDS: 4.89 Total: -4.35 kcal Atomic # 7 Polarization: -116.34 SS G_CDS: -2.98 Total: -119.32 kcal Atomic # 8 Polarization: -111.04 SS G_CDS: -2.70 Total: -113.74 kcal Atomic # 9 Polarization: -3.15 SS G_CDS: 0.78 Total: -2.38 kcal Atomic # 14 Polarization: 41.27 SS G_CDS: 2.03 Total: 43.30 kcal Atomic # 16 Polarization: 117.41 SS G_CDS: -0.33 Total: 117.08 kcal Total: -69.66 2.82 -66.83 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000596275822.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.985 kcal (2) G-P(sol) polarization free energy of solvation -69.657 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.672 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.822 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.835 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.849 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.70 seconds