Wall clock time and date at job start Wed Apr 1 2020 04:30:13
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 N
2 2 C 1.13606 * 1
3 3 C 1.47192 * 179.97438 * 2 1
4 4 N 1.46502 * 109.47025 * 223.22952 * 3 2 1
5 5 C 1.36874 * 120.00708 * 264.53078 * 4 3 2
6 6 H 1.07999 * 120.00096 * 209.93769 * 5 4 3
7 7 C 1.39049 * 119.99786 * 29.93321 * 5 4 3
8 8 N 1.31368 * 119.99858 * 12.61037 * 7 5 4
9 9 Si 1.86795 * 119.99828 * 192.60829 * 7 5 4
10 10 H 1.48500 * 109.47372 * 60.00269 * 9 7 5
11 11 H 1.48504 * 109.46740 * 180.02562 * 9 7 5
12 12 H 1.48494 * 109.47355 * 300.00169 * 9 7 5
13 13 C 1.34784 * 119.99509 * 84.52956 * 4 3 2
14 14 O 1.21600 * 120.00205 * 4.68738 * 13 4 3
15 15 C 1.47677 * 119.99851 * 184.67956 * 13 4 3
16 16 C 1.39714 * 120.10719 * 202.80609 * 15 13 4
17 17 C 1.37916 * 119.99828 * 179.97438 * 16 15 13
18 18 C 1.38400 * 120.21650 * 0.02562 * 17 16 15
19 19 Cl 1.73598 * 119.89459 * 180.02562 * 18 17 16
20 20 C 1.39103 * 120.21347 * 359.97438 * 18 17 16
21 21 N 1.40011 * 120.00199 * 179.97438 * 20 18 17
22 22 C 1.46755 * 124.35515 * 90.02107 * 21 20 18
23 23 C 1.54480 * 105.47662 * 162.98678 * 22 21 20
24 24 C 1.54631 * 101.76443 * 25.41249 * 23 22 21
25 25 C 1.34418 * 124.34426 * 270.02209 * 21 20 18
26 26 O 1.21298 * 124.94477 * 0.67099 * 25 21 20
27 27 C 1.38527 * 119.99837 * 0.25421 * 20 18 17
28 28 H 1.09003 * 109.47320 * 103.24048 * 3 2 1
29 29 H 1.08994 * 109.47578 * 343.23389 * 3 2 1
30 30 H 0.96998 * 120.00064 * 179.97438 * 8 7 5
31 31 H 1.07999 * 119.99927 * 0.02706 * 16 15 13
32 32 H 1.08000 * 119.88860 * 179.97438 * 17 16 15
33 33 H 1.09000 * 110.24693 * 43.98227 * 22 21 20
34 34 H 1.09006 * 110.24690 * 281.98380 * 22 21 20
35 35 H 1.09003 * 110.96379 * 267.29834 * 23 22 21
36 36 H 1.08998 * 110.97501 * 143.53519 * 23 22 21
37 37 H 1.08994 * 110.48617 * 216.52794 * 24 23 22
38 38 H 1.09001 * 110.59478 * 93.93683 * 24 23 22
39 39 H 1.08002 * 120.10869 * 179.74959 * 27 20 18
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 7 0.0000 0.0000 0.0000
2 6 1.1361 0.0000 0.0000
3 6 2.6080 0.0007 0.0000
4 7 3.0958 1.0073 0.9460
5 6 3.4300 2.2583 0.5026
6 1 4.1973 2.8241 1.0100
7 6 2.7814 2.8009 -0.6013
8 7 1.6913 2.2344 -1.0666
9 14 3.4602 4.3352 -1.4224
10 1 4.8368 4.0675 -1.9109
11 1 2.5919 4.7089 -2.5677
12 1 3.4912 5.4493 -0.4411
13 6 3.2157 0.7014 2.2532
14 8 3.0008 -0.4332 2.6343
15 6 3.6081 1.7440 3.2226
16 6 4.1888 1.3849 4.4415
17 6 4.5549 2.3605 5.3450
18 6 4.3486 3.6966 5.0489
19 17 4.8132 4.9178 6.1919
20 6 3.7712 4.0643 3.8380
21 7 3.5640 5.4172 3.5433
22 6 4.5404 6.2754 2.8621
23 6 3.7403 7.5037 2.3746
24 6 2.5615 7.5293 3.3749
25 6 2.4452 6.0971 3.8480
26 8 1.4842 5.6314 4.4233
27 6 3.3957 3.0914 2.9261
28 1 2.9713 0.2362 -1.0004
29 1 2.9718 -0.9831 0.2964
30 1 1.2387 2.6130 -1.8364
31 1 4.3517 0.3433 4.6759
32 1 5.0032 2.0808 6.2869
33 1 4.9779 5.7492 2.0136
34 1 5.3204 6.5852 3.5576
35 1 3.3837 7.3572 1.3550
36 1 4.3365 8.4129 2.4508
37 1 1.6443 7.8419 2.8758
38 1 2.7835 8.1909 4.2123
39 1 2.9435 3.3747 1.9871
RHF calculation, no. of doubly occupied orbitals= 60
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000604544278.mol2 39
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Wed Apr 1 2020 04:30:13
Heat of formation + Delta-G solvation = 7.499866 kcal
Electronic energy + Delta-G solvation = -28521.063635 eV
Core-core repulsion = 24455.751954 eV
Total energy + Delta-G solvation = -4065.311680 eV
No. of doubly occupied orbitals = 60
Molecular weight
(most abundant/longest-lived isotopes) = 347.082 amu
Computer time = 0.67 seconds
Orbital eigenvalues (eV)
-40.69717 -39.49881 -37.91141 -36.28402 -36.22078 -35.66310 -34.53721 -32.93551
-31.94376 -30.93044 -28.88642 -27.56190 -27.52512 -25.40698 -23.07476 -22.80764
-21.84817 -20.48140 -19.23613 -18.23622 -17.18650 -16.70189 -16.54650 -16.34117
-16.03374 -15.40542 -14.93600 -14.72525 -14.61950 -13.85378 -13.71890 -13.65379
-13.46555 -13.21052 -13.05820 -12.88004 -12.75819 -12.68506 -12.22049 -11.90441
-11.62490 -11.59740 -11.53936 -11.38723 -11.24233 -11.14135 -11.04117 -10.86880
-10.71767 -10.56992 -10.33127 -9.79209 -9.48133 -9.07151 -8.71809 -8.60628
-8.35765 -8.17887 -6.76246 -4.40508 1.07761 1.51974 2.22013 2.70795
2.86841 2.97327 3.01141 3.03862 3.30220 3.65132 3.88208 4.14063
4.19732 4.39776 4.48871 4.63985 4.70471 4.77128 5.01114 5.07790
5.34641 5.38096 5.43542 5.48139 5.59927 5.62828 5.68275 5.71739
5.75289 5.93383 6.11420 6.25115 6.39203 6.46898 6.53756 6.65005
6.84308 7.00167 7.09992 7.22690 7.32980 7.92670 8.32725 8.64426
8.92255 9.00283 9.42802 10.26309
Molecular weight = 347.08amu
Principal moments of inertia in cm(-1)
A = 0.010390 B = 0.005358 C = 0.004079
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 2694.178816 B = 5224.801990 C = 6862.359683
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 N -0.476 5.476
2 C 0.254 3.746
3 C 0.232 3.768
4 N -0.429 5.429
5 C -0.353 4.353
6 H 0.110 0.890
7 C 0.043 3.957
8 N -0.852 5.852
9 Si 0.921 3.079
10 H -0.267 1.267
11 H -0.280 1.280
12 H -0.266 1.266
13 C 0.507 3.493
14 O -0.589 6.589
15 C -0.087 4.087
16 C -0.059 4.059
17 C -0.125 4.125
18 C -0.019 4.019
19 Cl -0.075 7.075
20 C 0.127 3.873
21 N -0.571 5.571
22 C 0.104 3.896
23 C -0.132 4.132
24 C -0.151 4.151
25 C 0.522 3.478
26 O -0.519 6.519
27 C -0.063 4.063
28 H 0.115 0.885
29 H 0.093 0.907
30 H 0.281 0.719
31 H 0.141 0.859
32 H 0.136 0.864
33 H 0.084 0.916
34 H 0.074 0.926
35 H 0.085 0.915
36 H 0.091 0.909
37 H 0.102 0.898
38 H 0.104 0.896
39 H 0.187 0.813
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 11.164 9.973 4.393 15.602
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 N -0.156 5.156
2 C -0.064 4.064
3 C 0.106 3.894
4 N -0.147 5.147
5 C -0.480 4.480
6 H 0.127 0.873
7 C -0.165 4.165
8 N -0.487 5.487
9 Si 0.746 3.254
10 H -0.192 1.192
11 H -0.205 1.205
12 H -0.191 1.191
13 C 0.297 3.703
14 O -0.474 6.474
15 C -0.091 4.091
16 C -0.078 4.078
17 C -0.145 4.145
18 C -0.048 4.048
19 Cl -0.047 7.047
20 C 0.037 3.963
21 N -0.302 5.302
22 C -0.018 4.018
23 C -0.170 4.170
24 C -0.192 4.192
25 C 0.310 3.690
26 O -0.393 6.393
27 C -0.083 4.083
28 H 0.133 0.867
29 H 0.111 0.889
30 H 0.092 0.908
31 H 0.159 0.841
32 H 0.154 0.846
33 H 0.103 0.897
34 H 0.092 0.908
35 H 0.104 0.896
36 H 0.110 0.890
37 H 0.121 0.879
38 H 0.122 0.878
39 H 0.204 0.796
Dipole moment (debyes) X Y Z Total
from point charges 8.745 9.253 4.769 13.595
hybrid contribution 0.788 1.103 -0.446 1.427
sum 9.533 10.356 4.323 14.725
Atomic orbital electron populations
1.80850 1.13639 1.11543 1.09594 1.28948 0.95128 0.90393 0.91903
1.18446 0.81923 0.92881 0.96156 1.43319 1.55665 1.11602 1.04105
1.19752 1.20094 0.93053 1.15065 0.87291 1.25473 0.94220 0.99382
0.97450 1.69653 1.14531 1.40468 1.24006 0.86068 0.79179 0.80884
0.79268 1.19179 1.20535 1.19087 1.18032 0.82479 0.87545 0.82223
1.90675 1.56553 1.21509 1.78677 1.19960 1.00354 0.93424 0.95341
1.21269 0.94813 0.99873 0.91854 1.20768 1.03107 0.89860 1.00727
1.21446 1.02345 0.90166 0.90799 1.98331 1.90730 1.55702 1.59898
1.17099 1.03055 0.83382 0.92797 1.45406 1.17844 1.07491 1.59481
1.22179 0.91476 0.90960 0.97180 1.22624 0.96493 0.98052 0.99838
1.22287 1.01229 0.94782 1.00859 1.20983 0.81547 0.88400 0.78070
1.90751 1.32945 1.74343 1.41265 1.23047 0.93945 0.90940 1.00340
0.86684 0.88948 0.90766 0.84124 0.84640 0.89745 0.90787 0.89590
0.89039 0.87932 0.87815 0.79645
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 N -0.48 -12.14 18.54 42.16 0.78 -11.36 16
2 C 0.25 6.01 13.07 -20.76 -0.27 5.74 16
3 C 0.23 4.80 5.12 -6.83 -0.03 4.77 16
4 N -0.43 -9.41 2.57 -119.07 -0.31 -9.71 16
5 C -0.35 -7.48 6.37 -15.00 -0.10 -7.57 16
6 H 0.11 2.17 5.60 -52.49 -0.29 1.88 16
7 C 0.04 0.93 5.02 -17.45 -0.09 0.84 16
8 N -0.85 -19.94 9.43 55.50 0.52 -19.42 16
9 Si 0.92 16.46 29.57 -169.99 -5.03 11.43 16
10 H -0.27 -4.66 7.11 56.52 0.40 -4.26 16
11 H -0.28 -5.25 7.11 56.52 0.40 -4.85 16
12 H -0.27 -4.46 7.11 56.52 0.40 -4.06 16
13 C 0.51 11.30 7.42 -12.40 -0.09 11.21 16
14 O -0.59 -14.20 16.21 5.28 0.09 -14.12 16
15 C -0.09 -1.71 5.62 -104.99 -0.59 -2.30 16
16 C -0.06 -0.99 9.58 -39.15 -0.38 -1.36 16
17 C -0.13 -1.87 9.80 -39.64 -0.39 -2.25 16
18 C -0.02 -0.30 6.34 -39.20 -0.25 -0.55 16
19 Cl -0.08 -1.04 28.42 -51.86 -1.47 -2.52 16
20 C 0.13 2.19 5.37 -83.69 -0.45 1.74 16
21 N -0.57 -8.78 2.32 -112.28 -0.26 -9.04 16
22 C 0.10 1.16 7.28 -3.13 -0.02 1.14 16
23 C -0.13 -1.20 7.18 -25.10 -0.18 -1.38 16
24 C -0.15 -1.66 6.86 -26.74 -0.18 -1.84 16
25 C 0.52 8.57 7.98 -10.86 -0.09 8.48 16
26 O -0.52 -10.91 17.71 5.54 0.10 -10.81 16
27 C -0.06 -1.22 7.63 -38.97 -0.30 -1.52 16
28 H 0.12 2.24 7.11 -51.93 -0.37 1.87 16
29 H 0.09 1.72 7.53 -51.93 -0.39 1.33 16
30 H 0.28 6.47 8.31 -40.82 -0.34 6.13 16
31 H 0.14 2.21 7.81 -52.49 -0.41 1.80 16
32 H 0.14 1.62 8.06 -52.49 -0.42 1.20 16
33 H 0.08 0.94 8.14 -51.93 -0.42 0.52 16
34 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16
35 H 0.09 0.84 8.14 -51.93 -0.42 0.41 16
36 H 0.09 0.56 8.14 -51.93 -0.42 0.14 16
37 H 0.10 1.06 8.14 -51.93 -0.42 0.64 16
38 H 0.10 0.92 8.14 -51.93 -0.42 0.50 16
39 H 0.19 3.92 4.90 -52.49 -0.26 3.66 16
LS Contribution 354.91 15.07 5.35 5.35
Total: -1.00 -30.42 354.91 -7.45 -37.87
By element:
Atomic # 1 Polarization: 11.00 SS G_CDS: -3.82 Total: 7.18 kcal
Atomic # 6 Polarization: 18.54 SS G_CDS: -3.40 Total: 15.14 kcal
Atomic # 7 Polarization: -50.26 SS G_CDS: 0.74 Total: -49.52 kcal
Atomic # 8 Polarization: -25.11 SS G_CDS: 0.18 Total: -24.93 kcal
Atomic # 14 Polarization: 16.46 SS G_CDS: -5.03 Total: 11.43 kcal
Atomic # 17 Polarization: -1.04 SS G_CDS: -1.47 Total: -2.52 kcal
Total LS contribution 5.35 Total: 5.35 kcal
Total: -30.42 -7.45 -37.87 kcal
The number of atoms in the molecule is 39
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000604544278.mol2 39
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 45.373 kcal
(2) G-P(sol) polarization free energy of solvation -30.423 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 14.949 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.449 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.873 kcal
(6) G-S(sol) free energy of system = (1) + (5) 7.500 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.67 seconds