Wall clock time and date at job start Wed Apr 1 2020 04:30:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13606 * 1 3 3 C 1.47192 * 179.97438 * 2 1 4 4 N 1.46502 * 109.47025 * 223.22952 * 3 2 1 5 5 C 1.36874 * 120.00708 * 264.53078 * 4 3 2 6 6 H 1.07999 * 120.00096 * 209.93769 * 5 4 3 7 7 C 1.39049 * 119.99786 * 29.93321 * 5 4 3 8 8 N 1.31368 * 119.99858 * 12.61037 * 7 5 4 9 9 Si 1.86795 * 119.99828 * 192.60829 * 7 5 4 10 10 H 1.48500 * 109.47372 * 60.00269 * 9 7 5 11 11 H 1.48504 * 109.46740 * 180.02562 * 9 7 5 12 12 H 1.48494 * 109.47355 * 300.00169 * 9 7 5 13 13 C 1.34784 * 119.99509 * 84.52956 * 4 3 2 14 14 O 1.21600 * 120.00205 * 4.68738 * 13 4 3 15 15 C 1.47677 * 119.99851 * 184.67956 * 13 4 3 16 16 C 1.39714 * 120.10719 * 202.80609 * 15 13 4 17 17 C 1.37916 * 119.99828 * 179.97438 * 16 15 13 18 18 C 1.38400 * 120.21650 * 0.02562 * 17 16 15 19 19 Cl 1.73598 * 119.89459 * 180.02562 * 18 17 16 20 20 C 1.39103 * 120.21347 * 359.97438 * 18 17 16 21 21 N 1.40011 * 120.00199 * 179.97438 * 20 18 17 22 22 C 1.46755 * 124.35515 * 90.02107 * 21 20 18 23 23 C 1.54480 * 105.47662 * 162.98678 * 22 21 20 24 24 C 1.54631 * 101.76443 * 25.41249 * 23 22 21 25 25 C 1.34418 * 124.34426 * 270.02209 * 21 20 18 26 26 O 1.21298 * 124.94477 * 0.67099 * 25 21 20 27 27 C 1.38527 * 119.99837 * 0.25421 * 20 18 17 28 28 H 1.09003 * 109.47320 * 103.24048 * 3 2 1 29 29 H 1.08994 * 109.47578 * 343.23389 * 3 2 1 30 30 H 0.96998 * 120.00064 * 179.97438 * 8 7 5 31 31 H 1.07999 * 119.99927 * 0.02706 * 16 15 13 32 32 H 1.08000 * 119.88860 * 179.97438 * 17 16 15 33 33 H 1.09000 * 110.24693 * 43.98227 * 22 21 20 34 34 H 1.09006 * 110.24690 * 281.98380 * 22 21 20 35 35 H 1.09003 * 110.96379 * 267.29834 * 23 22 21 36 36 H 1.08998 * 110.97501 * 143.53519 * 23 22 21 37 37 H 1.08994 * 110.48617 * 216.52794 * 24 23 22 38 38 H 1.09001 * 110.59478 * 93.93683 * 24 23 22 39 39 H 1.08002 * 120.10869 * 179.74959 * 27 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1361 0.0000 0.0000 3 6 2.6080 0.0007 0.0000 4 7 3.0958 1.0073 0.9460 5 6 3.4300 2.2583 0.5026 6 1 4.1973 2.8241 1.0100 7 6 2.7814 2.8009 -0.6013 8 7 1.6913 2.2344 -1.0666 9 14 3.4602 4.3352 -1.4224 10 1 4.8368 4.0675 -1.9109 11 1 2.5919 4.7089 -2.5677 12 1 3.4912 5.4493 -0.4411 13 6 3.2157 0.7014 2.2532 14 8 3.0008 -0.4332 2.6343 15 6 3.6081 1.7440 3.2226 16 6 4.1888 1.3849 4.4415 17 6 4.5549 2.3605 5.3450 18 6 4.3486 3.6966 5.0489 19 17 4.8132 4.9178 6.1919 20 6 3.7712 4.0643 3.8380 21 7 3.5640 5.4172 3.5433 22 6 4.5404 6.2754 2.8621 23 6 3.7403 7.5037 2.3746 24 6 2.5615 7.5293 3.3749 25 6 2.4452 6.0971 3.8480 26 8 1.4842 5.6314 4.4233 27 6 3.3957 3.0914 2.9261 28 1 2.9713 0.2362 -1.0004 29 1 2.9718 -0.9831 0.2964 30 1 1.2387 2.6130 -1.8364 31 1 4.3517 0.3433 4.6759 32 1 5.0032 2.0808 6.2869 33 1 4.9779 5.7492 2.0136 34 1 5.3204 6.5852 3.5576 35 1 3.3837 7.3572 1.3550 36 1 4.3365 8.4129 2.4508 37 1 1.6443 7.8419 2.8758 38 1 2.7835 8.1909 4.2123 39 1 2.9435 3.3747 1.9871 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000604544278.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:30:13 Heat of formation + Delta-G solvation = 7.499866 kcal Electronic energy + Delta-G solvation = -28521.063635 eV Core-core repulsion = 24455.751954 eV Total energy + Delta-G solvation = -4065.311680 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 347.082 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -40.69717 -39.49881 -37.91141 -36.28402 -36.22078 -35.66310 -34.53721 -32.93551 -31.94376 -30.93044 -28.88642 -27.56190 -27.52512 -25.40698 -23.07476 -22.80764 -21.84817 -20.48140 -19.23613 -18.23622 -17.18650 -16.70189 -16.54650 -16.34117 -16.03374 -15.40542 -14.93600 -14.72525 -14.61950 -13.85378 -13.71890 -13.65379 -13.46555 -13.21052 -13.05820 -12.88004 -12.75819 -12.68506 -12.22049 -11.90441 -11.62490 -11.59740 -11.53936 -11.38723 -11.24233 -11.14135 -11.04117 -10.86880 -10.71767 -10.56992 -10.33127 -9.79209 -9.48133 -9.07151 -8.71809 -8.60628 -8.35765 -8.17887 -6.76246 -4.40508 1.07761 1.51974 2.22013 2.70795 2.86841 2.97327 3.01141 3.03862 3.30220 3.65132 3.88208 4.14063 4.19732 4.39776 4.48871 4.63985 4.70471 4.77128 5.01114 5.07790 5.34641 5.38096 5.43542 5.48139 5.59927 5.62828 5.68275 5.71739 5.75289 5.93383 6.11420 6.25115 6.39203 6.46898 6.53756 6.65005 6.84308 7.00167 7.09992 7.22690 7.32980 7.92670 8.32725 8.64426 8.92255 9.00283 9.42802 10.26309 Molecular weight = 347.08amu Principal moments of inertia in cm(-1) A = 0.010390 B = 0.005358 C = 0.004079 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2694.178816 B = 5224.801990 C = 6862.359683 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.476 5.476 2 C 0.254 3.746 3 C 0.232 3.768 4 N -0.429 5.429 5 C -0.353 4.353 6 H 0.110 0.890 7 C 0.043 3.957 8 N -0.852 5.852 9 Si 0.921 3.079 10 H -0.267 1.267 11 H -0.280 1.280 12 H -0.266 1.266 13 C 0.507 3.493 14 O -0.589 6.589 15 C -0.087 4.087 16 C -0.059 4.059 17 C -0.125 4.125 18 C -0.019 4.019 19 Cl -0.075 7.075 20 C 0.127 3.873 21 N -0.571 5.571 22 C 0.104 3.896 23 C -0.132 4.132 24 C -0.151 4.151 25 C 0.522 3.478 26 O -0.519 6.519 27 C -0.063 4.063 28 H 0.115 0.885 29 H 0.093 0.907 30 H 0.281 0.719 31 H 0.141 0.859 32 H 0.136 0.864 33 H 0.084 0.916 34 H 0.074 0.926 35 H 0.085 0.915 36 H 0.091 0.909 37 H 0.102 0.898 38 H 0.104 0.896 39 H 0.187 0.813 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.164 9.973 4.393 15.602 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.156 5.156 2 C -0.064 4.064 3 C 0.106 3.894 4 N -0.147 5.147 5 C -0.480 4.480 6 H 0.127 0.873 7 C -0.165 4.165 8 N -0.487 5.487 9 Si 0.746 3.254 10 H -0.192 1.192 11 H -0.205 1.205 12 H -0.191 1.191 13 C 0.297 3.703 14 O -0.474 6.474 15 C -0.091 4.091 16 C -0.078 4.078 17 C -0.145 4.145 18 C -0.048 4.048 19 Cl -0.047 7.047 20 C 0.037 3.963 21 N -0.302 5.302 22 C -0.018 4.018 23 C -0.170 4.170 24 C -0.192 4.192 25 C 0.310 3.690 26 O -0.393 6.393 27 C -0.083 4.083 28 H 0.133 0.867 29 H 0.111 0.889 30 H 0.092 0.908 31 H 0.159 0.841 32 H 0.154 0.846 33 H 0.103 0.897 34 H 0.092 0.908 35 H 0.104 0.896 36 H 0.110 0.890 37 H 0.121 0.879 38 H 0.122 0.878 39 H 0.204 0.796 Dipole moment (debyes) X Y Z Total from point charges 8.745 9.253 4.769 13.595 hybrid contribution 0.788 1.103 -0.446 1.427 sum 9.533 10.356 4.323 14.725 Atomic orbital electron populations 1.80850 1.13639 1.11543 1.09594 1.28948 0.95128 0.90393 0.91903 1.18446 0.81923 0.92881 0.96156 1.43319 1.55665 1.11602 1.04105 1.19752 1.20094 0.93053 1.15065 0.87291 1.25473 0.94220 0.99382 0.97450 1.69653 1.14531 1.40468 1.24006 0.86068 0.79179 0.80884 0.79268 1.19179 1.20535 1.19087 1.18032 0.82479 0.87545 0.82223 1.90675 1.56553 1.21509 1.78677 1.19960 1.00354 0.93424 0.95341 1.21269 0.94813 0.99873 0.91854 1.20768 1.03107 0.89860 1.00727 1.21446 1.02345 0.90166 0.90799 1.98331 1.90730 1.55702 1.59898 1.17099 1.03055 0.83382 0.92797 1.45406 1.17844 1.07491 1.59481 1.22179 0.91476 0.90960 0.97180 1.22624 0.96493 0.98052 0.99838 1.22287 1.01229 0.94782 1.00859 1.20983 0.81547 0.88400 0.78070 1.90751 1.32945 1.74343 1.41265 1.23047 0.93945 0.90940 1.00340 0.86684 0.88948 0.90766 0.84124 0.84640 0.89745 0.90787 0.89590 0.89039 0.87932 0.87815 0.79645 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.48 -12.14 18.54 42.16 0.78 -11.36 16 2 C 0.25 6.01 13.07 -20.76 -0.27 5.74 16 3 C 0.23 4.80 5.12 -6.83 -0.03 4.77 16 4 N -0.43 -9.41 2.57 -119.07 -0.31 -9.71 16 5 C -0.35 -7.48 6.37 -15.00 -0.10 -7.57 16 6 H 0.11 2.17 5.60 -52.49 -0.29 1.88 16 7 C 0.04 0.93 5.02 -17.45 -0.09 0.84 16 8 N -0.85 -19.94 9.43 55.50 0.52 -19.42 16 9 Si 0.92 16.46 29.57 -169.99 -5.03 11.43 16 10 H -0.27 -4.66 7.11 56.52 0.40 -4.26 16 11 H -0.28 -5.25 7.11 56.52 0.40 -4.85 16 12 H -0.27 -4.46 7.11 56.52 0.40 -4.06 16 13 C 0.51 11.30 7.42 -12.40 -0.09 11.21 16 14 O -0.59 -14.20 16.21 5.28 0.09 -14.12 16 15 C -0.09 -1.71 5.62 -104.99 -0.59 -2.30 16 16 C -0.06 -0.99 9.58 -39.15 -0.38 -1.36 16 17 C -0.13 -1.87 9.80 -39.64 -0.39 -2.25 16 18 C -0.02 -0.30 6.34 -39.20 -0.25 -0.55 16 19 Cl -0.08 -1.04 28.42 -51.86 -1.47 -2.52 16 20 C 0.13 2.19 5.37 -83.69 -0.45 1.74 16 21 N -0.57 -8.78 2.32 -112.28 -0.26 -9.04 16 22 C 0.10 1.16 7.28 -3.13 -0.02 1.14 16 23 C -0.13 -1.20 7.18 -25.10 -0.18 -1.38 16 24 C -0.15 -1.66 6.86 -26.74 -0.18 -1.84 16 25 C 0.52 8.57 7.98 -10.86 -0.09 8.48 16 26 O -0.52 -10.91 17.71 5.54 0.10 -10.81 16 27 C -0.06 -1.22 7.63 -38.97 -0.30 -1.52 16 28 H 0.12 2.24 7.11 -51.93 -0.37 1.87 16 29 H 0.09 1.72 7.53 -51.93 -0.39 1.33 16 30 H 0.28 6.47 8.31 -40.82 -0.34 6.13 16 31 H 0.14 2.21 7.81 -52.49 -0.41 1.80 16 32 H 0.14 1.62 8.06 -52.49 -0.42 1.20 16 33 H 0.08 0.94 8.14 -51.93 -0.42 0.52 16 34 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 35 H 0.09 0.84 8.14 -51.93 -0.42 0.41 16 36 H 0.09 0.56 8.14 -51.93 -0.42 0.14 16 37 H 0.10 1.06 8.14 -51.93 -0.42 0.64 16 38 H 0.10 0.92 8.14 -51.93 -0.42 0.50 16 39 H 0.19 3.92 4.90 -52.49 -0.26 3.66 16 LS Contribution 354.91 15.07 5.35 5.35 Total: -1.00 -30.42 354.91 -7.45 -37.87 By element: Atomic # 1 Polarization: 11.00 SS G_CDS: -3.82 Total: 7.18 kcal Atomic # 6 Polarization: 18.54 SS G_CDS: -3.40 Total: 15.14 kcal Atomic # 7 Polarization: -50.26 SS G_CDS: 0.74 Total: -49.52 kcal Atomic # 8 Polarization: -25.11 SS G_CDS: 0.18 Total: -24.93 kcal Atomic # 14 Polarization: 16.46 SS G_CDS: -5.03 Total: 11.43 kcal Atomic # 17 Polarization: -1.04 SS G_CDS: -1.47 Total: -2.52 kcal Total LS contribution 5.35 Total: 5.35 kcal Total: -30.42 -7.45 -37.87 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000604544278.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.373 kcal (2) G-P(sol) polarization free energy of solvation -30.423 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 14.949 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.449 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.873 kcal (6) G-S(sol) free energy of system = (1) + (5) 7.500 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds