Wall clock time and date at job start Wed Apr 1 2020 04:50:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.39769 * 125.83885 * 2 1 4 4 C 1.36177 * 107.81591 * 180.16339 * 3 2 1 5 5 N 1.39208 * 126.22275 * 179.84443 * 4 3 2 6 6 S 1.65596 * 120.00156 * 351.33709 * 5 4 3 7 7 O 1.42097 * 106.40367 * 181.41908 * 6 5 4 8 8 O 1.42104 * 106.39923 * 48.50194 * 6 5 4 9 9 C 1.76200 * 107.21732 * 294.96136 * 6 5 4 10 10 C 1.38704 * 120.30795 * 96.32340 * 9 6 5 11 11 C 1.38486 * 118.50714 * 180.22818 * 10 9 6 12 12 C 1.39460 * 119.05017 * 359.48451 * 11 10 9 13 13 C 1.43202 * 119.74021 * 180.26938 * 12 11 10 14 14 N 8.01827 * 95.51756 * 301.40472 * 2 1 3 15 15 N 1.32789 * 120.52489 * 0.52810 * 12 11 10 16 16 C 1.31591 * 121.62053 * 359.74328 * 15 12 11 17 17 N 1.35253 * 107.55409 * 359.58810 * 4 3 2 18 18 C 1.46501 * 126.04292 * 180.25680 * 17 4 3 19 19 C 1.50703 * 109.46483 * 90.00016 * 18 17 4 20 20 H 1.07994 * 120.00397 * 0.02562 * 19 18 17 21 21 C 1.37880 * 119.99585 * 180.02562 * 19 18 17 22 22 N 1.31516 * 120.00074 * 180.02562 * 21 19 18 23 23 Si 1.86803 * 120.00164 * 359.97438 * 21 19 18 24 24 H 1.48498 * 109.46965 * 90.00183 * 23 21 19 25 25 H 1.48494 * 109.47170 * 210.00440 * 23 21 19 26 26 H 1.48498 * 109.46850 * 330.00588 * 23 21 19 27 27 N 1.30837 * 125.83853 * 179.70526 * 2 1 3 28 28 H 1.08994 * 109.47451 * 270.27280 * 1 2 3 29 29 H 1.09008 * 109.47143 * 30.27382 * 1 2 3 30 30 H 1.09005 * 109.47211 * 150.27239 * 1 2 3 31 31 H 1.08004 * 126.09808 * 0.02562 * 3 2 1 32 32 H 0.96998 * 119.99744 * 171.33161 * 5 4 3 33 33 H 1.08004 * 120.74580 * 359.95948 * 10 9 6 34 34 H 1.07999 * 120.47645 * 179.72922 * 11 10 9 35 35 H 1.07994 * 119.54562 * 179.97438 * 16 15 12 36 36 H 1.08996 * 109.47314 * 210.00105 * 18 17 4 37 37 H 1.09002 * 109.46896 * 330.00986 * 18 17 4 38 38 H 0.96995 * 119.99909 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3253 1.1331 0.0000 4 6 3.6203 0.7117 -0.0037 5 7 4.7500 1.5251 -0.0080 6 16 4.5929 3.1593 -0.2250 7 8 5.9093 3.6941 -0.2127 8 8 3.5722 3.5862 0.6669 9 6 3.9684 3.4116 -1.8532 10 6 2.6089 3.5908 -2.0615 11 6 2.1582 3.7813 -3.3571 12 6 3.0834 3.7971 -4.4005 13 6 2.6342 3.9988 -5.7452 14 7 2.2779 4.1588 -6.8119 15 7 4.3770 3.6215 -4.1575 16 6 4.8304 3.4332 -2.9366 17 7 3.6092 -0.6407 0.0033 18 6 4.7867 -1.5124 0.0078 19 6 5.1904 -1.8037 1.4302 20 1 4.6262 -1.3823 2.2489 21 6 6.2803 -2.6085 1.6864 22 7 6.6324 -2.8633 2.9276 23 14 7.2560 -3.3382 0.2703 24 1 8.3471 -2.4060 -0.1112 25 1 7.8392 -4.6381 0.6890 26 1 6.3572 -3.5504 -0.8925 27 7 2.2730 -1.0606 0.0055 28 1 -0.3634 0.0049 1.0276 29 1 -0.3634 0.8876 -0.5181 30 1 -0.3634 -0.8924 -0.5096 31 1 1.9904 2.1599 0.0004 32 1 5.6292 1.1347 0.1162 33 1 1.9168 3.5777 -1.2325 34 1 1.1058 3.9196 -3.5561 35 1 5.8893 3.2935 -2.7774 36 1 4.5493 -2.4465 -0.5011 37 1 5.6083 -1.0158 -0.5085 38 1 7.3989 -3.4297 3.1078 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000608927421.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:50:32 Heat of formation + Delta-G solvation = 85.308221 kcal Electronic energy + Delta-G solvation = -27618.652325 eV Core-core repulsion = 23591.051126 eV Total energy + Delta-G solvation = -4027.601199 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 347.084 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -40.98300 -40.83737 -37.61315 -37.10104 -36.21495 -35.34713 -33.98859 -33.43112 -32.41176 -32.27748 -29.66266 -28.31863 -26.49112 -25.86703 -24.49269 -22.69642 -21.14090 -20.25319 -20.20114 -19.46168 -18.26625 -17.53925 -17.35616 -17.27995 -16.86735 -15.55602 -15.41859 -15.31029 -15.07166 -14.86143 -14.53292 -14.28695 -13.89893 -13.54560 -13.43744 -13.37107 -13.27287 -12.92725 -12.89499 -12.71870 -12.48546 -12.39919 -12.22987 -12.08522 -11.92725 -11.82133 -11.58016 -11.05889 -10.87099 -10.80193 -10.36279 -10.31589 -10.08583 -10.03320 -9.81931 -8.91468 -8.26813 -7.91561 -6.38680 -4.44371 -0.52612 -0.03819 0.53767 1.94662 2.04369 2.28995 2.56128 2.86055 3.03855 3.08210 3.11839 3.13009 3.17949 3.31797 3.40386 3.79139 3.95923 4.09562 4.22719 4.30499 4.53410 4.77044 4.83867 4.94997 5.02644 5.05404 5.20940 5.55310 5.71569 5.78338 5.83181 5.84965 6.05375 6.13348 6.25629 6.56170 6.66714 6.74575 6.97662 7.09780 7.13490 7.54822 8.14556 8.28967 8.66565 9.15006 10.73329 Molecular weight = 347.08amu Principal moments of inertia in cm(-1) A = 0.011140 B = 0.003692 C = 0.003541 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2512.855092 B = 7582.355815 C = 7906.323738 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 C 0.074 3.926 3 C -0.336 4.336 4 C 0.330 3.670 5 N -1.025 6.025 6 S 2.709 3.291 7 O -0.936 6.936 8 O -0.926 6.926 9 C -0.714 4.714 10 C 0.043 3.957 11 C -0.139 4.139 12 C 0.246 3.754 13 C 0.260 3.740 14 N -0.371 5.371 15 N -0.464 5.464 16 C 0.213 3.787 17 N -0.330 5.330 18 C 0.226 3.774 19 C -0.551 4.551 20 H 0.084 0.916 21 C 0.082 3.918 22 N -0.880 5.880 23 Si 0.870 3.130 24 H -0.269 1.269 25 H -0.278 1.278 26 H -0.263 1.263 27 N -0.279 5.279 28 H 0.074 0.926 29 H 0.072 0.928 30 H 0.069 0.931 31 H 0.152 0.848 32 H 0.437 0.563 33 H 0.171 0.829 34 H 0.160 0.840 35 H 0.186 0.814 36 H 0.057 0.943 37 H 0.040 0.960 38 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.866 13.395 -10.342 18.662 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C -0.091 4.091 3 C -0.370 4.370 4 C 0.104 3.896 5 N -0.777 5.777 6 S 2.794 3.206 7 O -0.926 6.926 8 O -0.915 6.915 9 C -0.802 4.802 10 C 0.016 3.984 11 C -0.162 4.162 12 C 0.108 3.892 13 C -0.057 4.057 14 N -0.047 5.047 15 N -0.174 5.174 16 C 0.052 3.948 17 N -0.114 5.114 18 C 0.107 3.893 19 C -0.589 4.589 20 H 0.102 0.898 21 C -0.124 4.124 22 N -0.516 5.516 23 Si 0.696 3.304 24 H -0.195 1.195 25 H -0.203 1.203 26 H -0.188 1.188 27 N -0.103 5.103 28 H 0.093 0.907 29 H 0.091 0.909 30 H 0.088 0.912 31 H 0.170 0.830 32 H 0.275 0.725 33 H 0.189 0.811 34 H 0.178 0.822 35 H 0.202 0.798 36 H 0.075 0.925 37 H 0.058 0.942 38 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -7.429 12.903 -12.010 19.129 hybrid contribution 0.689 -0.205 -0.025 0.719 sum -6.740 12.698 -12.034 18.748 Atomic orbital electron populations 1.20094 0.87080 1.02598 1.02791 1.21866 0.96570 0.90213 1.00460 1.20833 0.88919 1.00551 1.26696 1.17458 0.86591 0.84177 1.01367 1.52915 1.14043 1.26327 1.84464 1.01948 0.73917 0.71171 0.73524 1.93660 1.37016 1.75203 1.86680 1.93641 1.59151 1.78916 1.59822 1.32292 1.04598 1.17281 1.26028 1.21553 0.93382 0.85387 0.98076 1.22154 1.01491 1.00521 0.92080 1.16677 0.90143 0.95451 0.86908 1.24920 0.93978 0.94969 0.91881 1.81284 1.07543 1.05917 1.09961 1.67713 1.13845 1.11851 1.24041 1.22605 1.00233 0.86740 0.85204 1.48994 1.06423 1.02115 1.53830 1.20051 0.79149 0.90018 1.00037 1.21164 1.14507 1.33040 0.90150 0.89807 1.24817 0.96572 0.95174 0.95806 1.69860 1.26732 1.36461 1.18546 0.86949 0.80900 0.79878 0.82715 1.19461 1.20282 1.18787 1.77443 0.85661 1.21676 1.25566 0.90698 0.90930 0.91226 0.83028 0.72465 0.81126 0.82206 0.79754 0.92486 0.94244 0.91901 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.75 10.44 36.00 0.38 -0.38 16 2 C 0.07 1.20 7.21 -82.45 -0.59 0.61 16 3 C -0.34 -5.14 8.96 -39.75 -0.36 -5.49 16 4 C 0.33 5.64 7.59 -153.40 -1.16 4.48 16 5 N -1.02 -14.55 5.85 31.11 0.18 -14.37 16 6 S 2.71 32.19 5.37 -107.50 -0.58 31.61 16 7 O -0.94 -12.39 17.47 -57.17 -1.00 -13.39 16 8 O -0.93 -12.58 15.01 -57.17 -0.86 -13.44 16 9 C -0.71 -6.77 5.82 -39.33 -0.23 -7.00 16 10 C 0.04 0.33 8.69 -39.32 -0.34 -0.01 16 11 C -0.14 -0.93 9.80 -39.03 -0.38 -1.31 16 12 C 0.25 2.20 6.58 -85.07 -0.56 1.64 16 13 C 0.26 2.54 15.53 -22.47 -0.35 2.19 16 14 N -0.37 -4.25 18.54 41.84 0.78 -3.47 16 15 N -0.46 -4.74 10.28 -11.16 -0.11 -4.85 16 16 C 0.21 1.99 10.68 -17.57 -0.19 1.81 16 17 N -0.33 -6.70 3.60 -61.63 -0.22 -6.92 16 18 C 0.23 4.93 5.04 -5.19 -0.03 4.90 16 19 C -0.55 -14.38 9.94 -34.44 -0.34 -14.72 16 20 H 0.08 2.50 8.06 -52.49 -0.42 2.07 16 21 C 0.08 2.15 5.47 -17.82 -0.10 2.06 16 22 N -0.88 -25.00 13.96 55.43 0.77 -24.23 16 23 Si 0.87 18.94 27.47 -169.99 -4.67 14.27 16 24 H -0.27 -5.62 7.11 56.52 0.40 -5.21 16 25 H -0.28 -6.11 7.11 56.52 0.40 -5.71 16 26 H -0.26 -5.46 6.54 56.52 0.37 -5.09 16 27 N -0.28 -5.58 12.56 33.65 0.42 -5.16 16 28 H 0.07 0.79 8.14 -51.93 -0.42 0.37 16 29 H 0.07 0.59 8.14 -51.92 -0.42 0.17 16 30 H 0.07 0.74 8.14 -51.93 -0.42 0.32 16 31 H 0.15 1.85 4.34 -52.48 -0.23 1.62 16 32 H 0.44 5.96 8.20 -34.47 -0.28 5.68 16 33 H 0.17 1.02 5.96 -52.48 -0.31 0.71 16 34 H 0.16 0.55 8.06 -52.49 -0.42 0.12 16 35 H 0.19 1.34 7.77 -52.49 -0.41 0.93 16 36 H 0.06 1.26 7.20 -51.93 -0.37 0.89 16 37 H 0.04 0.76 7.05 -51.93 -0.37 0.40 16 38 H 0.27 7.15 8.31 -40.82 -0.34 6.81 16 LS Contribution 351.99 15.07 5.30 5.30 Total: -1.00 -34.34 351.99 -7.49 -41.82 By element: Atomic # 1 Polarization: 7.32 SS G_CDS: -3.25 Total: 4.07 kcal Atomic # 6 Polarization: -6.98 SS G_CDS: -4.25 Total: -11.24 kcal Atomic # 7 Polarization: -60.82 SS G_CDS: 1.82 Total: -59.00 kcal Atomic # 8 Polarization: -24.98 SS G_CDS: -1.86 Total: -26.84 kcal Atomic # 14 Polarization: 18.94 SS G_CDS: -4.67 Total: 14.27 kcal Atomic # 16 Polarization: 32.19 SS G_CDS: -0.58 Total: 31.61 kcal Total LS contribution 5.30 Total: 5.30 kcal Total: -34.34 -7.49 -41.82 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000608927421.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 127.131 kcal (2) G-P(sol) polarization free energy of solvation -34.336 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 92.796 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.487 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.823 kcal (6) G-S(sol) free energy of system = (1) + (5) 85.308 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds