Wall clock time and date at job start Wed Apr 1 2020 03:56:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45202 * 1 3 3 C 1.34899 * 116.99831 * 2 1 4 4 O 1.21627 * 120.00110 * 0.02562 * 3 2 1 5 5 C 1.46397 * 119.99874 * 179.97438 * 3 2 1 6 6 S 1.75837 * 125.46528 * 355.65608 * 5 3 2 7 7 C 1.70607 * 91.56322 * 180.21049 * 6 5 3 8 8 C 1.33861 * 110.96574 * 359.80685 * 7 6 5 9 9 C 1.36751 * 125.46159 * 175.51792 * 5 3 2 10 10 S 1.76203 * 123.35575 * 359.97438 * 9 5 3 11 11 O 1.42092 * 106.40241 * 52.57989 * 10 9 5 12 12 O 1.42095 * 106.40291 * 279.65802 * 10 9 5 13 13 N 1.65601 * 107.21415 * 166.12043 * 10 9 5 14 14 C 1.46502 * 119.99762 * 94.61651 * 13 10 9 15 15 C 1.50698 * 109.47527 * 94.16184 * 14 13 10 16 16 H 1.08009 * 119.99597 * 359.97438 * 15 14 13 17 17 C 1.37876 * 120.00626 * 180.02562 * 15 14 13 18 18 N 1.31507 * 120.00480 * 179.97438 * 17 15 14 19 19 Si 1.86801 * 119.99414 * 359.97438 * 17 15 14 20 20 H 1.48511 * 109.46937 * 90.00518 * 19 17 15 21 21 H 1.48504 * 109.47112 * 210.00104 * 19 17 15 22 22 H 1.48493 * 109.47672 * 330.00651 * 19 17 15 23 23 C 1.46493 * 119.99994 * 274.60745 * 13 10 9 24 24 C 1.53003 * 109.47239 * 120.00596 * 23 13 10 25 25 C 1.53006 * 109.47479 * 240.00210 * 23 13 10 26 26 H 1.08998 * 109.46897 * 300.00059 * 1 2 3 27 27 H 1.08998 * 109.47012 * 60.00101 * 1 2 3 28 28 H 1.08996 * 109.46745 * 179.97438 * 1 2 3 29 29 H 1.08003 * 124.51585 * 179.85138 * 7 6 5 30 30 H 1.08001 * 122.44500 * 180.02562 * 8 7 6 31 31 H 1.09001 * 109.47040 * 214.15871 * 14 13 10 32 32 H 1.08998 * 109.47281 * 334.15432 * 14 13 10 33 33 H 0.97004 * 120.00071 * 179.97438 * 18 17 15 34 34 H 1.09004 * 109.47261 * 0.02562 * 23 13 10 35 35 H 1.09004 * 109.46913 * 59.99886 * 24 23 13 36 36 H 1.09000 * 109.47346 * 180.02562 * 24 23 13 37 37 H 1.09006 * 109.46685 * 300.00509 * 24 23 13 38 38 H 1.09000 * 109.46479 * 60.00477 * 25 23 13 39 39 H 1.09000 * 109.47281 * 180.02562 * 25 23 13 40 40 H 1.08994 * 109.47331 * 300.00364 * 25 23 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0644 1.2020 0.0000 4 8 1.4020 2.2220 0.0005 5 6 3.5264 1.2786 0.0006 6 16 4.6199 -0.0940 0.1098 7 6 5.9843 0.9281 0.0443 8 6 5.6170 2.2113 -0.0573 9 6 4.2606 2.4290 -0.0864 10 16 3.5391 4.0313 -0.2161 11 8 2.6138 4.1428 0.8566 12 8 3.1727 4.1973 -1.5789 13 7 4.7375 5.1342 0.0836 14 6 5.4837 5.7257 -1.0298 15 6 4.8477 7.0345 -1.4217 16 1 3.9747 7.3900 -0.8944 17 6 5.3796 7.7777 -2.4540 18 7 4.8244 8.9196 -2.7964 19 14 6.8891 7.1625 -3.3664 20 1 6.4648 6.3261 -4.5179 21 1 7.6758 8.3214 -3.8598 22 1 7.7267 6.3510 -2.4473 23 6 5.0514 5.5184 1.4619 24 6 6.5097 5.1714 1.7686 25 6 4.8387 7.0239 1.6328 26 1 -0.3633 0.5138 0.8900 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3633 -1.0276 -0.0005 29 1 7.0079 0.5854 0.0793 30 1 6.3344 3.0167 -0.1126 31 1 6.5152 5.9003 -0.7239 32 1 5.4674 5.0446 -1.8807 33 1 5.1989 9.4427 -3.5224 34 1 4.3979 4.9787 2.1474 35 1 7.1634 5.7109 1.0832 36 1 6.7431 5.4569 2.7944 37 1 6.6612 4.0988 1.6468 38 1 3.7998 7.2711 1.4144 39 1 5.0727 7.3099 2.6583 40 1 5.4924 7.5633 0.9475 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000611017094.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:56:33 Heat of formation + Delta-G solvation = -134.046115 kcal Electronic energy + Delta-G solvation = -27707.862975 eV Core-core repulsion = 23741.608307 eV Total energy + Delta-G solvation = -3966.254668 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 347.074 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -41.74208 -39.11778 -38.57455 -38.23431 -37.68154 -36.78162 -34.71785 -32.51893 -31.78280 -29.39836 -28.89484 -27.93722 -26.59611 -24.35700 -23.40945 -21.98636 -21.57634 -20.25869 -19.43326 -19.02494 -18.64750 -18.26040 -17.75279 -17.45726 -17.08120 -16.58919 -16.21361 -15.57224 -15.46067 -15.04195 -14.90177 -14.75114 -14.59911 -14.45111 -14.13867 -13.90119 -13.68420 -13.59398 -13.17754 -13.13080 -13.05247 -12.99216 -12.67353 -12.60527 -12.58140 -12.28683 -12.22420 -12.14861 -12.02868 -11.86251 -11.80018 -11.58617 -11.36636 -10.71123 -10.41219 -9.91420 -9.81477 -8.21511 -6.25262 -1.24729 -0.74170 0.23045 0.65408 0.83448 1.28011 1.33287 1.38442 1.44136 1.51033 2.02748 2.40442 2.81075 3.12016 3.42763 3.58817 3.76575 3.92130 4.03803 4.21359 4.24272 4.30968 4.34509 4.51567 4.54236 4.61774 4.76249 4.81737 4.88932 4.95054 4.96450 4.97253 5.06748 5.16518 5.27996 5.53808 5.57117 5.67607 5.88688 6.23382 6.38362 6.77332 7.35401 8.95846 Molecular weight = 347.07amu Principal moments of inertia in cm(-1) A = 0.014116 B = 0.004397 C = 0.004223 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1983.100954 B = 6365.912388 C = 6629.147209 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.024 3.976 2 O -0.342 6.342 3 C 0.513 3.487 4 O -0.513 6.513 5 C -0.218 4.218 6 S 0.407 5.593 7 C -0.219 4.219 8 C -0.105 4.105 9 C -0.612 4.612 10 S 2.695 3.305 11 O -0.975 6.975 12 O -0.992 6.992 13 N -0.976 5.976 14 C 0.228 3.772 15 C -0.530 4.530 16 H 0.031 0.969 17 C 0.006 3.994 18 N -0.951 5.951 19 Si 0.935 3.065 20 H -0.276 1.276 21 H -0.281 1.281 22 H -0.217 1.217 23 C 0.137 3.863 24 C -0.158 4.158 25 C -0.149 4.149 26 H 0.066 0.934 27 H 0.061 0.939 28 H 0.153 0.847 29 H 0.230 0.770 30 H 0.173 0.827 31 H 0.073 0.927 32 H 0.032 0.968 33 H 0.265 0.735 34 H 0.089 0.911 35 H 0.064 0.936 36 H 0.090 0.910 37 H 0.076 0.924 38 H 0.019 0.981 39 H 0.085 0.915 40 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.421 -25.228 10.337 28.010 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 O -0.258 6.258 3 C 0.356 3.644 4 O -0.404 6.404 5 C -0.339 4.339 6 S 0.677 5.323 7 C -0.357 4.357 8 C -0.132 4.132 9 C -0.718 4.718 10 S 2.786 3.214 11 O -0.965 6.965 12 O -0.983 6.983 13 N -0.816 5.816 14 C 0.104 3.896 15 C -0.569 4.569 16 H 0.049 0.951 17 C -0.191 4.191 18 N -0.592 5.592 19 Si 0.757 3.243 20 H -0.202 1.202 21 H -0.207 1.207 22 H -0.139 1.139 23 C 0.032 3.968 24 C -0.217 4.217 25 C -0.208 4.208 26 H 0.085 0.915 27 H 0.080 0.920 28 H 0.171 0.829 29 H 0.247 0.753 30 H 0.190 0.810 31 H 0.091 0.909 32 H 0.050 0.950 33 H 0.074 0.926 34 H 0.107 0.893 35 H 0.083 0.917 36 H 0.109 0.891 37 H 0.095 0.905 38 H 0.039 0.961 39 H 0.104 0.896 40 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges 5.186 -26.273 10.162 28.643 hybrid contribution 0.092 2.121 -0.958 2.329 sum 5.278 -24.152 9.204 26.380 Atomic orbital electron populations 1.23804 0.73110 1.06879 1.03034 1.86513 1.26152 1.29218 1.83933 1.20214 0.87898 0.82871 0.73383 1.91074 1.66732 1.36795 1.45801 1.23500 0.94618 1.00541 1.15285 1.82553 0.89738 1.02573 1.57481 1.26288 1.07737 0.96842 1.04855 1.19813 0.91405 1.00000 1.01962 1.30637 1.05427 1.21068 1.14712 1.01639 0.73218 0.73649 0.72891 1.93487 1.59612 1.86677 1.56709 1.93522 1.81724 1.86123 1.36884 1.57279 1.55904 1.54828 1.13598 1.19357 0.93836 0.92257 0.84146 1.21674 1.13422 1.04973 1.16811 0.95070 1.25885 1.00995 0.94780 0.97447 1.70079 1.43134 1.15413 1.30551 0.85913 0.79540 0.78858 0.79988 1.20171 1.20686 1.13944 1.21074 0.99162 0.96512 0.80026 1.22221 0.93383 1.02752 1.03305 1.22072 1.00721 0.95846 1.02170 0.91545 0.92012 0.82873 0.75301 0.80968 0.90931 0.95012 0.92613 0.89260 0.91712 0.89106 0.90517 0.96128 0.89642 0.92020 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.44 10.57 113.37 1.20 1.64 16 2 O -0.34 -8.41 10.43 -58.14 -0.61 -9.02 16 3 C 0.51 17.38 7.92 69.95 0.55 17.93 16 4 O -0.51 -22.35 13.15 26.72 0.35 -22.00 16 5 C -0.22 -6.53 6.45 24.05 0.16 -6.37 16 6 S 0.41 6.29 22.93 -56.49 -1.30 5.00 16 7 C -0.22 -3.08 10.92 66.82 0.73 -2.35 16 8 C -0.11 -2.45 9.44 21.08 0.20 -2.25 16 9 C -0.61 -20.41 5.87 21.73 0.13 -20.29 16 10 S 2.70 123.03 4.48 -56.49 -0.25 122.78 16 11 O -0.97 -48.32 14.54 -119.03 -1.73 -50.05 16 12 O -0.99 -54.78 16.85 -128.00 -2.16 -56.94 16 13 N -0.98 -40.63 2.19 -497.41 -1.09 -41.72 16 14 C 0.23 10.46 3.72 85.63 0.32 10.78 16 15 C -0.53 -30.86 8.13 25.60 0.21 -30.65 16 16 H 0.03 2.07 7.41 -2.91 -0.02 2.05 16 17 C 0.01 0.35 5.47 84.66 0.46 0.82 16 18 N -0.95 -61.02 13.96 21.45 0.30 -60.72 16 19 Si 0.94 42.53 27.47 68.60 1.88 44.41 16 20 H -0.28 -12.65 7.11 99.48 0.71 -11.94 16 21 H -0.28 -12.55 7.11 99.48 0.71 -11.84 16 22 H -0.22 -8.17 6.54 99.48 0.65 -7.52 16 23 C 0.14 4.68 3.22 45.00 0.14 4.83 16 24 C -0.16 -3.71 9.16 71.98 0.66 -3.05 16 25 C -0.15 -5.63 8.24 71.98 0.59 -5.04 16 26 H 0.07 1.27 8.14 -2.39 -0.02 1.25 16 27 H 0.06 1.24 8.14 -2.39 -0.02 1.22 16 28 H 0.15 1.30 8.14 -2.39 -0.02 1.28 16 29 H 0.23 0.95 8.06 -2.91 -0.02 0.93 16 30 H 0.17 3.55 6.76 -2.91 -0.02 3.53 16 31 H 0.07 2.86 5.50 -2.39 -0.01 2.84 16 32 H 0.03 1.47 6.94 -2.39 -0.02 1.45 16 33 H 0.27 15.85 8.31 -92.71 -0.77 15.08 16 34 H 0.09 2.93 7.04 -2.39 -0.02 2.91 16 35 H 0.06 1.60 6.69 -2.39 -0.02 1.58 16 36 H 0.09 1.65 8.14 -2.39 -0.02 1.63 16 37 H 0.08 1.42 6.76 -2.38 -0.02 1.41 16 38 H 0.02 0.88 7.96 -2.39 -0.02 0.86 16 39 H 0.08 2.49 8.14 -2.39 -0.02 2.47 16 40 H 0.06 2.59 6.70 -2.39 -0.02 2.58 16 Total: -1.00 -92.29 354.66 1.78 -90.51 By element: Atomic # 1 Polarization: 10.74 SS G_CDS: 1.02 Total: 11.76 kcal Atomic # 6 Polarization: -39.36 SS G_CDS: 5.35 Total: -34.01 kcal Atomic # 7 Polarization: -101.65 SS G_CDS: -0.79 Total: -102.44 kcal Atomic # 8 Polarization: -133.86 SS G_CDS: -4.14 Total: -138.01 kcal Atomic # 14 Polarization: 42.53 SS G_CDS: 1.88 Total: 44.41 kcal Atomic # 16 Polarization: 129.33 SS G_CDS: -1.55 Total: 127.78 kcal Total: -92.29 1.78 -90.51 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000611017094.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -43.536 kcal (2) G-P(sol) polarization free energy of solvation -92.286 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -135.821 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.775 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -90.511 kcal (6) G-S(sol) free energy of system = (1) + (5) -134.046 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds