Wall clock time and date at job start Wed Apr 1 2020 04:46:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42905 * 1 3 3 C 1.42900 * 113.99706 * 2 1 4 4 C 1.52996 * 109.47265 * 180.02562 * 3 2 1 5 5 N 1.46494 * 109.47338 * 64.99436 * 4 3 2 6 6 C 1.46498 * 120.00694 * 275.43355 * 5 4 3 7 7 C 1.50704 * 109.46930 * 275.00351 * 6 5 4 8 8 H 1.07997 * 119.99904 * 359.97438 * 7 6 5 9 9 C 1.37881 * 119.99898 * 179.97438 * 7 6 5 10 10 N 1.31514 * 119.99937 * 179.97438 * 9 7 6 11 11 Si 1.86796 * 119.99775 * 359.97438 * 9 7 6 12 12 H 1.48506 * 109.47303 * 90.00153 * 11 9 7 13 13 H 1.48501 * 109.46815 * 209.99803 * 11 9 7 14 14 H 1.48496 * 109.47539 * 329.99860 * 11 9 7 15 15 S 1.65605 * 119.99707 * 95.43228 * 5 4 3 16 16 O 1.42100 * 106.39984 * 331.94572 * 15 5 4 17 17 O 1.42098 * 106.40269 * 199.02757 * 15 5 4 18 18 C 1.76203 * 107.21678 * 85.48646 * 15 5 4 19 19 C 1.38227 * 120.00952 * 344.72933 * 18 15 5 20 20 C 1.38224 * 120.01665 * 180.25577 * 19 18 15 21 21 C 1.38268 * 120.02093 * 359.76477 * 20 19 18 22 22 C 1.38183 * 120.01581 * 359.97438 * 21 20 19 23 23 C 1.50700 * 120.00784 * 179.97438 * 22 21 20 24 24 C 1.38336 * 120.00396 * 164.49341 * 18 15 5 25 25 Cl 1.73597 * 120.01293 * 0.02562 * 24 18 15 26 26 H 1.08993 * 109.47489 * 299.99810 * 1 2 3 27 27 H 1.08999 * 109.47073 * 60.00262 * 1 2 3 28 28 H 1.09000 * 109.46724 * 180.02562 * 1 2 3 29 29 H 1.09002 * 109.47043 * 59.99469 * 3 2 1 30 30 H 1.09004 * 109.47177 * 299.99797 * 3 2 1 31 31 H 1.09005 * 109.47064 * 304.99804 * 4 3 2 32 32 H 1.08998 * 109.47466 * 185.00044 * 4 3 2 33 33 H 1.09007 * 109.46837 * 34.99588 * 6 5 4 34 34 H 1.08997 * 109.47563 * 155.00123 * 6 5 4 35 35 H 0.96995 * 119.99979 * 180.02562 * 10 9 7 36 36 H 1.08007 * 119.99507 * 359.97438 * 19 18 15 37 37 H 1.07998 * 119.98910 * 179.74272 * 20 19 18 38 38 H 1.07994 * 119.98597 * 179.97438 * 21 20 19 39 39 H 1.08998 * 109.47088 * 269.98085 * 23 22 21 40 40 H 1.08999 * 109.46793 * 29.97761 * 23 22 21 41 41 H 1.08999 * 109.47458 * 149.97867 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5354 1.1848 -0.0006 5 7 3.9757 0.5645 -1.2526 6 6 3.9915 -0.8947 -1.3813 7 6 5.2854 -1.4338 -0.8276 8 1 6.0222 -0.7570 -0.4210 9 6 5.5283 -2.7910 -0.8402 10 7 6.6576 -3.2613 -0.3575 11 14 4.2534 -3.9614 -1.5430 12 1 4.5049 -4.1544 -2.9938 13 1 4.3454 -5.2697 -0.8463 14 1 2.8964 -3.3909 -1.3475 15 16 4.4555 1.5129 -2.5226 16 8 3.7527 2.7413 -2.3939 17 8 4.3856 0.6954 -3.6827 18 6 6.1601 1.8870 -2.2793 19 6 6.7450 1.6754 -1.0449 20 6 8.0808 1.9737 -0.8524 21 6 8.8340 2.4794 -1.8959 22 6 8.2518 2.6862 -3.1319 23 6 9.0727 3.2379 -4.2689 24 6 6.9145 2.3878 -3.3251 25 17 6.1820 2.6487 -4.8772 26 1 -0.3634 0.5138 0.8899 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3633 -1.0277 0.0005 29 1 1.6885 1.8464 0.8900 30 1 1.6886 1.8464 -0.8900 31 1 3.8515 0.5684 0.8410 32 1 3.9784 2.1766 0.0889 33 1 3.1544 -1.3176 -0.8257 34 1 3.9047 -1.1678 -2.4330 35 1 6.8287 -4.2160 -0.3667 36 1 6.1569 1.2812 -0.2292 37 1 8.5363 1.8122 0.1134 38 1 9.8776 2.7127 -1.7448 39 1 9.0159 4.3264 -4.2634 40 1 10.1110 2.9277 -4.1512 41 1 8.6852 2.8586 -5.2144 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000611415484.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:46:02 Heat of formation + Delta-G solvation = -90.728798 kcal Electronic energy + Delta-G solvation = -27547.996302 eV Core-core repulsion = 23581.576307 eV Total energy + Delta-G solvation = -3966.419995 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 347.079 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -39.33828 -37.89224 -36.67575 -36.52631 -35.59553 -35.29315 -32.91559 -32.51223 -30.87693 -29.83660 -27.31748 -26.95578 -25.82244 -23.26418 -22.67855 -21.90996 -21.51946 -18.44109 -17.59016 -17.12720 -16.66975 -16.24567 -16.05577 -15.96109 -15.37225 -15.25581 -14.75573 -14.36006 -14.30312 -14.08105 -13.74958 -13.39979 -12.64586 -12.54694 -12.53572 -12.48588 -12.28013 -12.17020 -12.08219 -11.83204 -11.60014 -11.52226 -11.47195 -11.31471 -11.20425 -10.92392 -10.90164 -10.75034 -10.34122 -10.25843 -10.13944 -9.55224 -9.38991 -9.13189 -8.58038 -8.57416 -8.15228 -6.10971 -4.10553 0.85390 0.94010 1.25294 2.03041 3.31237 3.37682 3.42263 3.45471 3.51414 4.03774 4.10976 4.42607 4.66604 4.82421 5.03712 5.12998 5.21260 5.24271 5.27915 5.32996 5.43963 5.44385 5.52729 5.55879 5.61014 5.63370 5.68657 5.73332 5.83254 6.01739 6.03715 6.15259 6.22772 6.36004 6.38998 6.80768 7.03210 7.17921 7.33969 7.47977 7.61055 8.43283 8.88348 9.50656 11.01253 Molecular weight = 347.08amu Principal moments of inertia in cm(-1) A = 0.010445 B = 0.005435 C = 0.004402 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2680.184672 B = 5150.928487 C = 6358.939597 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 O -0.374 6.374 3 C 0.043 3.957 4 C 0.126 3.874 5 N -0.969 5.969 6 C 0.212 3.788 7 C -0.544 4.544 8 H 0.081 0.919 9 C 0.078 3.922 10 N -0.896 5.896 11 Si 0.866 3.134 12 H -0.273 1.273 13 H -0.286 1.286 14 H -0.258 1.258 15 S 2.685 3.315 16 O -0.969 6.969 17 O -0.941 6.941 18 C -0.651 4.651 19 C -0.005 4.005 20 C -0.126 4.126 21 C -0.065 4.065 22 C -0.100 4.100 23 C -0.117 4.117 24 C 0.048 3.952 25 Cl -0.054 7.054 26 H 0.036 0.964 27 H 0.037 0.963 28 H 0.082 0.918 29 H 0.056 0.944 30 H 0.054 0.946 31 H 0.099 0.901 32 H 0.084 0.916 33 H 0.061 0.939 34 H 0.043 0.957 35 H 0.264 0.736 36 H 0.150 0.850 37 H 0.137 0.863 38 H 0.135 0.865 39 H 0.075 0.925 40 H 0.072 0.928 41 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.031 13.083 -0.261 13.127 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.292 6.292 3 C -0.036 4.036 4 C 0.000 4.000 5 N -0.809 5.809 6 C 0.089 3.911 7 C -0.583 4.583 8 H 0.099 0.901 9 C -0.125 4.125 10 N -0.534 5.534 11 Si 0.692 3.308 12 H -0.198 1.198 13 H -0.212 1.212 14 H -0.182 1.182 15 S 2.772 3.228 16 O -0.959 6.959 17 O -0.931 6.931 18 C -0.735 4.735 19 C -0.024 4.024 20 C -0.144 4.144 21 C -0.083 4.083 22 C -0.101 4.101 23 C -0.174 4.174 24 C 0.020 3.980 25 Cl -0.025 7.025 26 H 0.055 0.945 27 H 0.056 0.944 28 H 0.101 0.899 29 H 0.074 0.926 30 H 0.072 0.928 31 H 0.117 0.883 32 H 0.103 0.897 33 H 0.079 0.921 34 H 0.061 0.939 35 H 0.074 0.926 36 H 0.168 0.832 37 H 0.155 0.845 38 H 0.153 0.847 39 H 0.093 0.907 40 H 0.091 0.909 41 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges -1.361 13.039 -1.067 13.153 hybrid contribution 0.010 -0.664 -0.037 0.665 sum -1.351 12.375 -1.104 12.497 Atomic orbital electron populations 1.22719 0.82145 1.02453 0.99406 1.88050 1.18657 1.27288 1.95242 1.23100 0.94896 0.85149 1.00449 1.21293 0.91995 0.98106 0.88655 1.57143 1.77784 1.18401 1.27539 1.19785 0.99164 0.73588 0.98574 1.21497 1.02079 0.93239 1.41485 0.90094 1.24786 0.95152 0.98080 0.94449 1.69883 1.23817 1.13830 1.45848 0.86979 0.83199 0.80704 0.79870 1.19846 1.21179 1.18219 1.02362 0.73545 0.73169 0.73742 1.93547 1.70406 1.45194 1.86718 1.93586 1.85855 1.68049 1.45640 1.31059 1.28334 1.14268 0.99842 1.21014 0.95757 0.90999 0.94584 1.21357 0.94226 0.99054 0.99803 1.21204 0.99851 0.95755 0.91537 1.19767 0.92160 1.01495 0.96714 1.20865 0.99206 1.01106 0.96223 1.20182 0.93173 0.98734 0.85957 1.98400 1.81915 1.94713 1.27475 0.94522 0.94438 0.89910 0.92633 0.92779 0.88284 0.89743 0.92130 0.93934 0.92596 0.83247 0.84500 0.84693 0.90683 0.90883 0.90667 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.38 11.01 101.05 1.11 1.49 16 2 O -0.37 -6.30 8.99 -35.23 -0.32 -6.61 16 3 C 0.04 0.64 6.28 37.16 0.23 0.87 16 4 C 0.13 2.03 4.83 -4.05 -0.02 2.01 16 5 N -0.97 -19.44 1.99 -115.67 -0.23 -19.67 16 6 C 0.21 4.98 4.33 -5.19 -0.02 4.96 16 7 C -0.54 -14.34 9.94 -34.44 -0.34 -14.68 16 8 H 0.08 2.16 6.17 -52.49 -0.32 1.84 16 9 C 0.08 2.18 5.47 -17.82 -0.10 2.09 16 10 N -0.90 -26.23 13.96 55.43 0.77 -25.45 16 11 Si 0.87 21.21 27.47 -169.99 -4.67 16.54 16 12 H -0.27 -6.75 7.11 56.52 0.40 -6.35 16 13 H -0.29 -6.90 7.11 56.52 0.40 -6.50 16 14 H -0.26 -6.05 6.54 56.52 0.37 -5.68 16 15 S 2.68 55.27 4.80 -107.50 -0.52 54.76 16 16 O -0.97 -19.68 17.09 -57.17 -0.98 -20.66 16 17 O -0.94 -21.99 15.16 -57.17 -0.87 -22.86 16 18 C -0.65 -12.41 5.84 -39.55 -0.23 -12.64 16 19 C 0.00 -0.08 8.77 -39.59 -0.35 -0.43 16 20 C -0.13 -1.84 10.05 -39.58 -0.40 -2.24 16 21 C -0.07 -0.87 9.70 -39.59 -0.38 -1.26 16 22 C -0.10 -1.48 5.88 -104.59 -0.62 -2.09 16 23 C -0.12 -1.31 9.61 36.01 0.35 -0.97 16 24 C 0.05 0.85 6.30 -39.49 -0.25 0.60 16 25 Cl -0.05 -0.94 25.15 -51.86 -1.30 -2.25 16 26 H 0.04 0.38 8.14 -51.93 -0.42 -0.04 16 27 H 0.04 0.44 8.14 -51.93 -0.42 0.02 16 28 H 0.08 0.97 8.14 -51.93 -0.42 0.55 16 29 H 0.06 0.66 8.14 -51.93 -0.42 0.23 16 30 H 0.05 0.83 8.08 -51.93 -0.42 0.41 16 31 H 0.10 1.57 8.11 -51.93 -0.42 1.15 16 32 H 0.08 1.13 7.71 -51.93 -0.40 0.72 16 33 H 0.06 1.43 5.62 -51.92 -0.29 1.13 16 34 H 0.04 1.06 6.31 -51.93 -0.33 0.73 16 35 H 0.26 7.33 8.31 -40.82 -0.34 6.99 16 36 H 0.15 2.47 5.51 -52.48 -0.29 2.18 16 37 H 0.14 1.63 8.06 -52.49 -0.42 1.20 16 38 H 0.14 1.31 8.06 -52.49 -0.42 0.88 16 39 H 0.07 0.71 8.14 -51.93 -0.42 0.29 16 40 H 0.07 0.67 8.09 -51.93 -0.42 0.25 16 41 H 0.07 0.87 6.91 -51.93 -0.36 0.51 16 LS Contribution 361.00 15.07 5.44 5.44 Total: -1.00 -33.45 361.00 -9.06 -42.51 By element: Atomic # 1 Polarization: 5.92 SS G_CDS: -5.38 Total: 0.54 kcal Atomic # 6 Polarization: -21.26 SS G_CDS: -1.01 Total: -22.28 kcal Atomic # 7 Polarization: -45.67 SS G_CDS: 0.54 Total: -45.13 kcal Atomic # 8 Polarization: -47.97 SS G_CDS: -2.16 Total: -50.13 kcal Atomic # 14 Polarization: 21.21 SS G_CDS: -4.67 Total: 16.54 kcal Atomic # 16 Polarization: 55.27 SS G_CDS: -0.52 Total: 54.76 kcal Atomic # 17 Polarization: -0.94 SS G_CDS: -1.30 Total: -2.25 kcal Total LS contribution 5.44 Total: 5.44 kcal Total: -33.45 -9.06 -42.51 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000611415484.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -48.223 kcal (2) G-P(sol) polarization free energy of solvation -33.449 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -81.671 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.058 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.506 kcal (6) G-S(sol) free energy of system = (1) + (5) -90.729 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds