Wall clock time and date at job start Wed Apr 1 2020 04:46:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42905 * 1 3 3 C 1.42900 * 113.99706 * 2 1 4 4 C 1.52996 * 109.47265 * 180.02562 * 3 2 1 5 5 N 1.46494 * 109.47338 * 64.99436 * 4 3 2 6 6 C 1.46498 * 120.00694 * 275.43355 * 5 4 3 7 7 C 1.50704 * 109.46930 * 275.00351 * 6 5 4 8 8 H 1.07997 * 119.99904 * 359.97438 * 7 6 5 9 9 C 1.37881 * 119.99898 * 179.97438 * 7 6 5 10 10 N 1.31514 * 119.99937 * 179.97438 * 9 7 6 11 11 Si 1.86796 * 119.99775 * 359.97438 * 9 7 6 12 12 H 1.48506 * 109.47303 * 90.00153 * 11 9 7 13 13 H 1.48501 * 109.46815 * 209.99803 * 11 9 7 14 14 H 1.48496 * 109.47539 * 329.99860 * 11 9 7 15 15 S 1.65605 * 119.99707 * 95.43228 * 5 4 3 16 16 O 1.42100 * 106.39984 * 331.94572 * 15 5 4 17 17 O 1.42098 * 106.40269 * 199.02757 * 15 5 4 18 18 C 1.76203 * 107.21678 * 85.48646 * 15 5 4 19 19 C 1.38227 * 120.00952 * 344.72933 * 18 15 5 20 20 C 1.38224 * 120.01665 * 180.25577 * 19 18 15 21 21 C 1.38268 * 120.02093 * 359.76477 * 20 19 18 22 22 C 1.38183 * 120.01581 * 359.97438 * 21 20 19 23 23 C 1.50700 * 120.00784 * 179.97438 * 22 21 20 24 24 C 1.38336 * 120.00396 * 164.49341 * 18 15 5 25 25 Cl 1.73597 * 120.01293 * 0.02562 * 24 18 15 26 26 H 1.08993 * 109.47489 * 299.99810 * 1 2 3 27 27 H 1.08999 * 109.47073 * 60.00262 * 1 2 3 28 28 H 1.09000 * 109.46724 * 180.02562 * 1 2 3 29 29 H 1.09002 * 109.47043 * 59.99469 * 3 2 1 30 30 H 1.09004 * 109.47177 * 299.99797 * 3 2 1 31 31 H 1.09005 * 109.47064 * 304.99804 * 4 3 2 32 32 H 1.08998 * 109.47466 * 185.00044 * 4 3 2 33 33 H 1.09007 * 109.46837 * 34.99588 * 6 5 4 34 34 H 1.08997 * 109.47563 * 155.00123 * 6 5 4 35 35 H 0.96995 * 119.99979 * 180.02562 * 10 9 7 36 36 H 1.08007 * 119.99507 * 359.97438 * 19 18 15 37 37 H 1.07998 * 119.98910 * 179.74272 * 20 19 18 38 38 H 1.07994 * 119.98597 * 179.97438 * 21 20 19 39 39 H 1.08998 * 109.47088 * 269.98085 * 23 22 21 40 40 H 1.08999 * 109.46793 * 29.97761 * 23 22 21 41 41 H 1.08999 * 109.47458 * 149.97867 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5354 1.1848 -0.0006 5 7 3.9757 0.5645 -1.2526 6 6 3.9915 -0.8947 -1.3813 7 6 5.2854 -1.4338 -0.8276 8 1 6.0222 -0.7570 -0.4210 9 6 5.5283 -2.7910 -0.8402 10 7 6.6576 -3.2613 -0.3575 11 14 4.2534 -3.9614 -1.5430 12 1 4.5049 -4.1544 -2.9938 13 1 4.3454 -5.2697 -0.8463 14 1 2.8964 -3.3909 -1.3475 15 16 4.4555 1.5129 -2.5226 16 8 3.7527 2.7413 -2.3939 17 8 4.3856 0.6954 -3.6827 18 6 6.1601 1.8870 -2.2793 19 6 6.7450 1.6754 -1.0449 20 6 8.0808 1.9737 -0.8524 21 6 8.8340 2.4794 -1.8959 22 6 8.2518 2.6862 -3.1319 23 6 9.0727 3.2379 -4.2689 24 6 6.9145 2.3878 -3.3251 25 17 6.1820 2.6487 -4.8772 26 1 -0.3634 0.5138 0.8899 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3633 -1.0277 0.0005 29 1 1.6885 1.8464 0.8900 30 1 1.6886 1.8464 -0.8900 31 1 3.8515 0.5684 0.8410 32 1 3.9784 2.1766 0.0889 33 1 3.1544 -1.3176 -0.8257 34 1 3.9047 -1.1678 -2.4330 35 1 6.8287 -4.2160 -0.3667 36 1 6.1569 1.2812 -0.2292 37 1 8.5363 1.8122 0.1134 38 1 9.8776 2.7127 -1.7448 39 1 9.0159 4.3264 -4.2634 40 1 10.1110 2.9277 -4.1512 41 1 8.6852 2.8586 -5.2144 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000611415484.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:46:01 Heat of formation + Delta-G solvation = -113.453861 kcal Electronic energy + Delta-G solvation = -27548.981734 eV Core-core repulsion = 23581.576307 eV Total energy + Delta-G solvation = -3967.405427 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 347.079 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -40.52458 -39.14040 -38.30399 -37.84067 -37.11753 -36.94166 -34.53346 -34.02962 -32.08401 -31.37078 -28.90341 -28.04822 -26.99762 -24.59085 -24.19119 -23.27369 -22.94286 -19.96305 -19.24418 -18.63521 -18.40066 -17.54436 -17.49900 -17.17240 -16.68166 -16.58744 -16.31566 -15.74938 -15.51966 -15.42040 -15.21623 -14.62214 -14.44667 -14.07980 -13.82035 -13.61556 -13.56801 -13.49175 -13.39496 -13.23949 -13.19053 -13.03107 -12.78950 -12.74512 -12.66757 -12.50407 -12.23022 -12.14737 -11.98622 -11.89544 -11.69295 -11.51272 -10.71943 -10.51948 -10.34839 -9.83698 -9.74942 -8.24283 -6.25527 -0.66069 -0.36269 0.05692 0.74482 1.37488 1.41263 1.50353 1.84541 2.31522 2.39272 2.55027 2.95628 3.12468 3.44242 3.60078 3.78408 3.88822 4.03377 4.12811 4.18739 4.30036 4.39054 4.49747 4.51365 4.57311 4.60964 4.67776 4.74661 4.76450 4.86860 4.88632 4.97704 5.12973 5.16257 5.16730 5.23774 5.39087 5.53112 5.69071 5.73080 6.34381 6.36607 6.77788 7.37962 8.89977 Molecular weight = 347.08amu Principal moments of inertia in cm(-1) A = 0.010445 B = 0.005435 C = 0.004402 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2680.184672 B = 5150.928487 C = 6358.939597 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.023 3.977 2 O -0.408 6.408 3 C 0.041 3.959 4 C 0.114 3.886 5 N -0.971 5.971 6 C 0.224 3.776 7 C -0.536 4.536 8 H 0.071 0.929 9 C 0.027 3.973 10 N -0.934 5.934 11 Si 0.911 3.089 12 H -0.279 1.279 13 H -0.279 1.279 14 H -0.243 1.243 15 S 2.688 3.312 16 O -0.974 6.974 17 O -0.979 6.979 18 C -0.674 4.674 19 C -0.025 4.025 20 C -0.128 4.128 21 C -0.054 4.054 22 C -0.100 4.100 23 C -0.118 4.118 24 C 0.018 3.982 25 Cl -0.063 7.063 26 H 0.061 0.939 27 H 0.041 0.959 28 H 0.088 0.912 29 H 0.093 0.907 30 H 0.046 0.954 31 H 0.100 0.900 32 H 0.111 0.889 33 H 0.064 0.936 34 H 0.026 0.974 35 H 0.265 0.735 36 H 0.148 0.852 37 H 0.166 0.834 38 H 0.182 0.818 39 H 0.095 0.905 40 H 0.100 0.900 41 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.235 14.335 0.566 14.348 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.073 4.073 2 O -0.328 6.328 3 C -0.037 4.037 4 C -0.011 4.011 5 N -0.810 5.810 6 C 0.100 3.900 7 C -0.576 4.576 8 H 0.089 0.911 9 C -0.172 4.172 10 N -0.575 5.575 11 Si 0.736 3.264 12 H -0.204 1.204 13 H -0.204 1.204 14 H -0.167 1.167 15 S 2.779 3.221 16 O -0.964 6.964 17 O -0.970 6.970 18 C -0.762 4.762 19 C -0.044 4.044 20 C -0.146 4.146 21 C -0.072 4.072 22 C -0.101 4.101 23 C -0.175 4.175 24 C -0.010 4.010 25 Cl -0.034 7.034 26 H 0.079 0.921 27 H 0.060 0.940 28 H 0.106 0.894 29 H 0.111 0.889 30 H 0.064 0.936 31 H 0.118 0.882 32 H 0.129 0.871 33 H 0.081 0.919 34 H 0.044 0.956 35 H 0.074 0.926 36 H 0.165 0.835 37 H 0.184 0.816 38 H 0.199 0.801 39 H 0.113 0.887 40 H 0.119 0.881 41 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -0.630 14.308 -0.234 14.324 hybrid contribution -0.141 -0.929 -0.250 0.972 sum -0.771 13.379 -0.484 13.410 Atomic orbital electron populations 1.22916 0.80242 1.03365 1.00813 1.87982 1.20906 1.28362 1.95527 1.23161 0.93800 0.84940 1.01809 1.21662 0.93372 0.99165 0.86885 1.56995 1.78371 1.16808 1.28845 1.19437 0.97721 0.75705 0.97185 1.21801 1.02772 0.93046 1.39935 0.91087 1.25466 0.96722 0.99797 0.95188 1.69979 1.25512 1.14144 1.47818 0.86239 0.82024 0.79342 0.78786 1.20446 1.20428 1.16676 1.01919 0.74214 0.72788 0.73190 1.93523 1.71302 1.44914 1.86690 1.93529 1.86850 1.68958 1.47646 1.30737 1.27243 1.16821 1.01369 1.21181 0.97320 0.91963 0.93967 1.21794 0.93190 0.97995 1.01646 1.21778 1.01756 0.93452 0.90193 1.20302 0.91133 1.00189 0.98509 1.20992 0.99936 1.02205 0.94322 1.20526 0.94640 1.00330 0.85524 1.98385 1.82296 1.94816 1.27897 0.92092 0.94006 0.89364 0.88932 0.93591 0.88213 0.87148 0.91864 0.95636 0.92597 0.83461 0.81624 0.80058 0.88669 0.88132 0.91504 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.54 11.01 113.37 1.25 1.79 16 2 O -0.41 -13.34 8.99 -148.98 -1.34 -14.68 16 3 C 0.04 1.18 6.28 71.98 0.45 1.63 16 4 C 0.11 3.61 4.83 86.38 0.42 4.03 16 5 N -0.97 -39.23 1.99 -519.86 -1.03 -40.27 16 6 C 0.22 10.64 4.33 85.63 0.37 11.01 16 7 C -0.54 -28.59 9.94 25.60 0.25 -28.34 16 8 H 0.07 3.85 6.17 -2.91 -0.02 3.83 16 9 C 0.03 1.54 5.47 84.66 0.46 2.00 16 10 N -0.93 -55.31 13.96 21.45 0.30 -55.01 16 11 Si 0.91 43.78 27.47 68.60 1.88 45.67 16 12 H -0.28 -13.55 7.11 99.48 0.71 -12.85 16 13 H -0.28 -12.97 7.11 99.48 0.71 -12.26 16 14 H -0.24 -11.00 6.54 99.48 0.65 -10.35 16 15 S 2.69 112.68 4.80 -56.49 -0.27 112.41 16 16 O -0.97 -40.01 17.09 -128.00 -2.19 -42.19 16 17 O -0.98 -47.38 15.16 -128.00 -1.94 -49.32 16 18 C -0.67 -25.78 5.84 22.29 0.13 -25.65 16 19 C -0.03 -0.86 8.77 22.26 0.20 -0.67 16 20 C -0.13 -3.43 10.05 22.27 0.22 -3.21 16 21 C -0.05 -1.25 9.70 22.26 0.22 -1.04 16 22 C -0.10 -2.72 5.88 -19.84 -0.12 -2.84 16 23 C -0.12 -2.29 9.61 71.24 0.68 -1.60 16 24 C 0.02 0.64 6.30 22.33 0.14 0.78 16 25 Cl -0.06 -2.21 25.15 -2.72 -0.07 -2.28 16 26 H 0.06 1.14 8.14 -2.39 -0.02 1.12 16 27 H 0.04 0.94 8.14 -2.39 -0.02 0.92 16 28 H 0.09 1.96 8.14 -2.39 -0.02 1.94 16 29 H 0.09 1.95 8.14 -2.39 -0.02 1.93 16 30 H 0.05 1.38 8.08 -2.39 -0.02 1.36 16 31 H 0.10 3.12 8.11 -2.38 -0.02 3.10 16 32 H 0.11 2.84 7.71 -2.39 -0.02 2.82 16 33 H 0.06 2.98 5.62 -2.38 -0.01 2.96 16 34 H 0.03 1.31 6.31 -2.39 -0.02 1.29 16 35 H 0.26 14.88 8.31 -92.71 -0.77 14.11 16 36 H 0.15 4.89 5.51 -2.91 -0.02 4.87 16 37 H 0.17 3.40 8.06 -2.91 -0.02 3.37 16 38 H 0.18 2.48 8.06 -2.91 -0.02 2.46 16 39 H 0.09 1.48 8.14 -2.39 -0.02 1.46 16 40 H 0.10 1.40 8.09 -2.39 -0.02 1.38 16 41 H 0.07 1.43 6.91 -2.39 -0.02 1.41 16 Total: -1.00 -73.91 361.00 1.02 -72.89 By element: Atomic # 1 Polarization: 13.88 SS G_CDS: 0.99 Total: 14.87 kcal Atomic # 6 Polarization: -46.78 SS G_CDS: 4.68 Total: -42.10 kcal Atomic # 7 Polarization: -94.55 SS G_CDS: -0.73 Total: -95.28 kcal Atomic # 8 Polarization: -100.72 SS G_CDS: -5.47 Total: -106.19 kcal Atomic # 14 Polarization: 43.78 SS G_CDS: 1.88 Total: 45.67 kcal Atomic # 16 Polarization: 112.68 SS G_CDS: -0.27 Total: 112.41 kcal Atomic # 17 Polarization: -2.21 SS G_CDS: -0.07 Total: -2.28 kcal Total: -73.91 1.02 -72.89 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000611415484.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -40.562 kcal (2) G-P(sol) polarization free energy of solvation -73.911 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -114.473 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.019 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.892 kcal (6) G-S(sol) free energy of system = (1) + (5) -113.454 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds