Wall clock time and date at job start Wed Apr 1 2020 04:16:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86807 * 120.00011 * 2 1 4 4 H 1.48500 * 109.47248 * 270.00302 * 3 2 1 5 5 H 1.48493 * 109.46980 * 30.00670 * 3 2 1 6 6 H 1.48500 * 109.46751 * 150.00419 * 3 2 1 7 7 C 1.37876 * 120.00366 * 180.02562 * 2 1 3 8 8 H 1.07995 * 120.00452 * 179.97438 * 7 2 1 9 9 C 1.50710 * 119.99503 * 359.97438 * 7 2 1 10 10 C 1.52995 * 109.46897 * 179.97438 * 9 7 2 11 11 N 1.46503 * 109.47045 * 179.97438 * 10 9 7 12 12 C 1.34773 * 120.00117 * 180.02562 * 11 10 9 13 13 O 1.21364 * 120.00160 * 0.02562 * 12 11 10 14 14 C 1.49318 * 120.00369 * 180.02562 * 12 11 10 15 15 O 1.21384 * 119.99481 * 359.97438 * 14 12 11 16 16 N 1.34773 * 120.00369 * 179.97438 * 14 12 11 17 17 C 1.39342 * 120.00038 * 185.51479 * 16 14 12 18 18 C 1.37979 * 120.31801 * 24.88318 * 17 16 14 19 19 C 1.39066 * 120.64124 * 180.02562 * 18 17 16 20 20 C 1.36292 * 121.16225 * 359.97438 * 19 18 17 21 21 Cl 1.73606 * 119.98011 * 180.27833 * 20 19 18 22 22 C 1.40627 * 120.03855 * 359.97438 * 20 19 18 23 23 N 1.33729 * 120.99426 * 180.02562 * 22 20 19 24 24 C 1.31112 * 121.31983 * 179.97438 * 23 22 20 25 25 C 1.39267 * 121.73447 * 359.97438 * 24 23 22 26 26 C 1.36679 * 119.90711 * 0.02562 * 25 24 23 27 27 C 1.40526 * 118.17372 * 359.97438 * 26 25 24 28 28 H 0.97001 * 119.99843 * 359.97438 * 1 2 3 29 29 H 1.08996 * 109.46809 * 59.99836 * 9 7 2 30 30 H 1.08994 * 109.46728 * 300.00182 * 9 7 2 31 31 H 1.09003 * 109.47293 * 59.99661 * 10 9 7 32 32 H 1.09002 * 109.47048 * 299.99808 * 10 9 7 33 33 H 0.96997 * 119.99611 * 359.97438 * 11 10 9 34 34 H 0.96994 * 119.99849 * 5.52047 * 16 14 12 35 35 H 1.08004 * 119.67530 * 0.02562 * 18 17 16 36 36 H 1.08000 * 119.42002 * 180.02562 * 19 18 17 37 37 H 1.07998 * 119.13139 * 179.97438 * 24 23 22 38 38 H 1.07997 * 120.04500 * 180.02562 * 25 24 23 39 39 H 1.07999 * 120.91005 * 179.97438 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 2.4966 2.0465 -1.4001 5 1 1.4467 2.6526 0.7002 6 1 3.5467 1.4401 0.7000 7 6 2.0046 -1.1940 -0.0005 8 1 3.0845 -1.1940 -0.0010 9 6 1.2510 -2.4992 -0.0005 10 6 2.2452 -3.6620 -0.0018 11 7 1.5127 -4.9308 -0.0012 12 6 2.1865 -6.0980 -0.0016 13 8 3.4002 -6.0980 -0.0020 14 6 1.4400 -7.3911 -0.0016 15 8 0.2262 -7.3911 -0.0007 16 7 2.1139 -8.5583 -0.0025 17 6 1.4219 -9.7622 -0.1184 18 6 0.1837 -9.7982 -0.7263 19 6 -0.5130 -10.9958 -0.8451 20 6 0.0042 -12.1630 -0.3677 21 17 -0.8889 -13.6418 -0.5390 22 6 1.2637 -12.1711 0.2578 23 7 1.7894 -13.3053 0.7327 24 6 2.9633 -13.3202 1.3165 25 6 3.7195 -12.1610 1.4709 26 6 3.2399 -10.9678 1.0078 27 6 1.9814 -10.9562 0.3826 28 1 -0.4850 0.8401 0.0004 29 1 0.6240 -2.5566 -0.8903 30 1 0.6247 -2.5570 0.8896 31 1 2.8726 -3.6047 0.8877 32 1 2.8712 -3.6039 -0.8923 33 1 0.5427 -4.9307 0.0003 34 1 3.0805 -8.5603 0.0776 35 1 -0.2485 -8.8873 -1.1135 36 1 -1.4806 -11.0014 -1.3249 37 1 3.3541 -14.2562 1.6875 38 1 4.6834 -12.2048 1.9558 39 1 3.8125 -10.0589 1.1192 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000612257879.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:16:15 Heat of formation + Delta-G solvation = -19.515184 kcal Electronic energy + Delta-G solvation = -25997.130271 eV Core-core repulsion = 21930.647130 eV Total energy + Delta-G solvation = -4066.483141 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 347.082 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -41.79021 -40.63762 -38.87033 -37.54454 -36.82751 -35.61912 -34.94417 -33.12516 -32.90554 -31.11049 -30.04644 -29.51101 -26.05514 -24.87496 -24.39882 -24.07405 -21.97518 -21.13287 -20.57050 -19.16579 -18.92295 -17.68605 -17.31738 -16.88934 -16.47811 -16.11024 -15.98604 -15.26994 -15.14425 -15.05211 -14.77420 -14.56864 -14.41264 -13.85724 -13.76159 -13.54457 -13.18245 -12.96960 -12.78731 -12.41131 -12.38970 -12.02009 -11.65531 -11.33516 -11.13156 -11.07912 -10.74630 -10.72393 -10.50390 -10.38957 -10.10231 -9.90178 -9.59991 -9.35243 -9.28999 -8.88037 -8.49688 -8.11124 -6.16734 -4.20890 -0.20292 0.30541 1.08370 1.54974 1.83946 2.09428 2.45680 3.10736 3.24531 3.31096 3.33945 3.47422 3.58441 3.74797 4.17345 4.20049 4.26772 4.32027 4.45514 4.46208 4.77185 4.95439 5.02218 5.06133 5.20366 5.36507 5.49441 5.59483 5.71839 5.79727 6.01979 6.03859 6.10976 6.31146 6.39203 6.55159 6.63093 7.21793 7.40394 7.41788 7.47901 7.61151 7.79347 8.01333 8.19171 8.84542 9.44526 10.94617 Molecular weight = 347.08amu Principal moments of inertia in cm(-1) A = 0.023973 B = 0.001857 C = 0.001737 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1167.719581 B =15075.374437 C =16114.062637 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.891 5.891 2 C 0.060 3.940 3 Si 0.898 3.102 4 H -0.279 1.279 5 H -0.285 1.285 6 H -0.272 1.272 7 C -0.525 4.525 8 H 0.060 0.940 9 C 0.011 3.989 10 C 0.118 3.882 11 N -0.680 5.680 12 C 0.501 3.499 13 O -0.528 6.528 14 C 0.509 3.491 15 O -0.488 6.488 16 N -0.642 5.642 17 C 0.175 3.825 18 C -0.128 4.128 19 C -0.061 4.061 20 C -0.037 4.037 21 Cl -0.048 7.048 22 C 0.151 3.849 23 N -0.462 5.462 24 C 0.139 3.861 25 C -0.170 4.170 26 C -0.055 4.055 27 C -0.108 4.108 28 H 0.263 0.737 29 H 0.026 0.974 30 H 0.026 0.974 31 H 0.066 0.934 32 H 0.066 0.934 33 H 0.412 0.588 34 H 0.424 0.576 35 H 0.162 0.838 36 H 0.147 0.853 37 H 0.164 0.836 38 H 0.143 0.857 39 H 0.140 0.860 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.615 -27.376 0.659 27.622 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.530 5.530 2 C -0.143 4.143 3 Si 0.726 3.274 4 H -0.205 1.205 5 H -0.211 1.211 6 H -0.197 1.197 7 C -0.564 4.564 8 H 0.079 0.921 9 C -0.027 4.027 10 C -0.004 4.004 11 N -0.330 5.330 12 C 0.279 3.721 13 O -0.406 6.406 14 C 0.292 3.708 15 O -0.361 6.361 16 N -0.288 5.288 17 C 0.078 3.922 18 C -0.149 4.149 19 C -0.082 4.082 20 C -0.066 4.066 21 Cl -0.019 7.019 22 C 0.029 3.971 23 N -0.170 5.170 24 C -0.034 4.034 25 C -0.190 4.190 26 C -0.081 4.081 27 C -0.112 4.112 28 H 0.073 0.927 29 H 0.044 0.956 30 H 0.044 0.956 31 H 0.084 0.916 32 H 0.084 0.916 33 H 0.248 0.752 34 H 0.263 0.737 35 H 0.179 0.821 36 H 0.164 0.836 37 H 0.181 0.819 38 H 0.161 0.839 39 H 0.158 0.842 Dipole moment (debyes) X Y Z Total from point charges 2.826 -27.972 0.496 28.119 hybrid contribution 0.880 1.584 0.194 1.822 sum 3.705 -26.388 0.690 26.656 Atomic orbital electron populations 1.69950 1.06102 1.27056 1.49849 1.25004 0.94915 0.99492 0.94852 0.86488 0.79790 0.82895 0.78237 1.20512 1.21122 1.19717 1.20987 0.93217 0.90160 1.52001 0.92131 1.19366 0.94166 0.90813 0.98329 1.22015 0.96354 0.80403 1.01578 1.46259 1.11930 1.05679 1.69172 1.19598 0.87638 0.84772 0.80062 1.90766 1.12921 1.87245 1.49650 1.20772 0.87876 0.85426 0.76724 1.90753 1.13304 1.87188 1.44825 1.43111 1.12115 1.03465 1.70092 1.17630 0.93677 0.84106 0.96791 1.21382 0.94340 0.99561 0.99600 1.20744 1.00391 0.89784 0.97261 1.20389 0.92782 0.89001 1.04425 1.98370 1.73510 1.33861 1.96140 1.18220 0.93342 0.88388 0.97190 1.68190 1.12441 1.26869 1.09456 1.23060 0.89310 0.98531 0.92489 1.21922 1.02062 0.93233 1.01788 1.21323 0.93353 0.99285 0.94187 1.18397 0.96971 0.92977 1.02887 0.92700 0.95599 0.95594 0.91609 0.91585 0.75204 0.73668 0.82053 0.83572 0.81876 0.83898 0.84182 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.41 13.29 55.43 0.74 -24.67 16 2 C 0.06 1.62 5.46 -17.82 -0.10 1.53 16 3 Si 0.90 20.73 29.54 -169.99 -5.02 15.71 16 4 H -0.28 -6.37 7.11 56.52 0.40 -5.97 16 5 H -0.29 -6.55 7.11 56.52 0.40 -6.15 16 6 H -0.27 -6.16 7.11 56.52 0.40 -5.76 16 7 C -0.52 -13.91 9.11 -34.44 -0.31 -14.23 16 8 H 0.06 1.56 7.74 -52.49 -0.41 1.15 16 9 C 0.01 0.25 5.09 -27.88 -0.14 0.11 16 10 C 0.12 2.27 5.61 -4.04 -0.02 2.25 16 11 N -0.68 -11.07 5.55 -60.77 -0.34 -11.41 16 12 C 0.50 7.55 7.88 -11.65 -0.09 7.45 16 13 O -0.53 -8.82 16.48 5.48 0.09 -8.73 16 14 C 0.51 6.57 7.68 -11.65 -0.09 6.48 16 15 O -0.49 -6.93 13.65 5.47 0.07 -6.86 16 16 N -0.64 -6.71 5.15 -10.10 -0.05 -6.77 16 17 C 0.18 1.86 6.44 -83.47 -0.54 1.32 16 18 C -0.13 -1.36 8.70 -39.37 -0.34 -1.71 16 19 C -0.06 -0.59 9.69 -39.98 -0.39 -0.97 16 20 C -0.04 -0.40 6.33 -39.38 -0.25 -0.65 16 21 Cl -0.05 -0.49 28.50 -51.86 -1.48 -1.97 16 22 C 0.15 1.67 6.60 -84.84 -0.56 1.11 16 23 N -0.46 -4.81 9.81 -10.98 -0.11 -4.92 16 24 C 0.14 1.00 11.14 -17.48 -0.19 0.81 16 25 C -0.17 -1.05 10.03 -39.76 -0.40 -1.44 16 26 C -0.06 -0.42 9.55 -39.28 -0.38 -0.79 16 27 C -0.11 -1.08 5.75 -106.66 -0.61 -1.70 16 28 H 0.26 7.10 8.31 -40.82 -0.34 6.77 16 29 H 0.03 0.64 8.14 -51.93 -0.42 0.21 16 30 H 0.03 0.64 8.14 -51.93 -0.42 0.22 16 31 H 0.07 1.29 8.14 -51.93 -0.42 0.87 16 32 H 0.07 1.29 8.14 -51.93 -0.42 0.87 16 33 H 0.41 6.32 7.94 -40.82 -0.32 5.99 16 34 H 0.42 3.68 6.75 -40.82 -0.28 3.40 16 35 H 0.16 1.81 5.76 -52.48 -0.30 1.51 16 36 H 0.15 1.09 8.06 -52.49 -0.42 0.66 16 37 H 0.16 0.65 8.06 -52.49 -0.42 0.23 16 38 H 0.14 0.45 8.06 -52.49 -0.42 0.03 16 39 H 0.14 0.78 6.77 -52.49 -0.36 0.42 16 LS Contribution 358.37 15.07 5.40 5.40 Total: -1.00 -31.32 358.37 -8.87 -40.19 By element: Atomic # 1 Polarization: 8.21 SS G_CDS: -3.76 Total: 4.45 kcal Atomic # 6 Polarization: 3.98 SS G_CDS: -4.42 Total: -0.43 kcal Atomic # 7 Polarization: -48.01 SS G_CDS: 0.24 Total: -47.77 kcal Atomic # 8 Polarization: -15.75 SS G_CDS: 0.17 Total: -15.59 kcal Atomic # 14 Polarization: 20.73 SS G_CDS: -5.02 Total: 15.71 kcal Atomic # 17 Polarization: -0.49 SS G_CDS: -1.48 Total: -1.97 kcal Total LS contribution 5.40 Total: 5.40 kcal Total: -31.32 -8.87 -40.19 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000612257879.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.676 kcal (2) G-P(sol) polarization free energy of solvation -31.323 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -10.647 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.868 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.191 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.515 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds