Wall clock time and date at job start Wed Apr 1 2020 04:16:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86807 * 120.00011 * 2 1 4 4 H 1.48500 * 109.47248 * 270.00302 * 3 2 1 5 5 H 1.48493 * 109.46980 * 30.00670 * 3 2 1 6 6 H 1.48500 * 109.46751 * 150.00419 * 3 2 1 7 7 C 1.37876 * 120.00366 * 180.02562 * 2 1 3 8 8 H 1.07995 * 120.00452 * 179.97438 * 7 2 1 9 9 C 1.50710 * 119.99503 * 359.97438 * 7 2 1 10 10 C 1.52995 * 109.46897 * 179.97438 * 9 7 2 11 11 N 1.46503 * 109.47045 * 179.97438 * 10 9 7 12 12 C 1.34773 * 120.00117 * 180.02562 * 11 10 9 13 13 O 1.21364 * 120.00160 * 0.02562 * 12 11 10 14 14 C 1.49318 * 120.00369 * 180.02562 * 12 11 10 15 15 O 1.21384 * 119.99481 * 359.97438 * 14 12 11 16 16 N 1.34773 * 120.00369 * 179.97438 * 14 12 11 17 17 C 1.39342 * 120.00038 * 185.51479 * 16 14 12 18 18 C 1.37979 * 120.31801 * 24.88318 * 17 16 14 19 19 C 1.39066 * 120.64124 * 180.02562 * 18 17 16 20 20 C 1.36292 * 121.16225 * 359.97438 * 19 18 17 21 21 Cl 1.73606 * 119.98011 * 180.27833 * 20 19 18 22 22 C 1.40627 * 120.03855 * 359.97438 * 20 19 18 23 23 N 1.33729 * 120.99426 * 180.02562 * 22 20 19 24 24 C 1.31112 * 121.31983 * 179.97438 * 23 22 20 25 25 C 1.39267 * 121.73447 * 359.97438 * 24 23 22 26 26 C 1.36679 * 119.90711 * 0.02562 * 25 24 23 27 27 C 1.40526 * 118.17372 * 359.97438 * 26 25 24 28 28 H 0.97001 * 119.99843 * 359.97438 * 1 2 3 29 29 H 1.08996 * 109.46809 * 59.99836 * 9 7 2 30 30 H 1.08994 * 109.46728 * 300.00182 * 9 7 2 31 31 H 1.09003 * 109.47293 * 59.99661 * 10 9 7 32 32 H 1.09002 * 109.47048 * 299.99808 * 10 9 7 33 33 H 0.96997 * 119.99611 * 359.97438 * 11 10 9 34 34 H 0.96994 * 119.99849 * 5.52047 * 16 14 12 35 35 H 1.08004 * 119.67530 * 0.02562 * 18 17 16 36 36 H 1.08000 * 119.42002 * 180.02562 * 19 18 17 37 37 H 1.07998 * 119.13139 * 179.97438 * 24 23 22 38 38 H 1.07997 * 120.04500 * 180.02562 * 25 24 23 39 39 H 1.07999 * 120.91005 * 179.97438 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 2.4966 2.0465 -1.4001 5 1 1.4467 2.6526 0.7002 6 1 3.5467 1.4401 0.7000 7 6 2.0046 -1.1940 -0.0005 8 1 3.0845 -1.1940 -0.0010 9 6 1.2510 -2.4992 -0.0005 10 6 2.2452 -3.6620 -0.0018 11 7 1.5127 -4.9308 -0.0012 12 6 2.1865 -6.0980 -0.0016 13 8 3.4002 -6.0980 -0.0020 14 6 1.4400 -7.3911 -0.0016 15 8 0.2262 -7.3911 -0.0007 16 7 2.1139 -8.5583 -0.0025 17 6 1.4219 -9.7622 -0.1184 18 6 0.1837 -9.7982 -0.7263 19 6 -0.5130 -10.9958 -0.8451 20 6 0.0042 -12.1630 -0.3677 21 17 -0.8889 -13.6418 -0.5390 22 6 1.2637 -12.1711 0.2578 23 7 1.7894 -13.3053 0.7327 24 6 2.9633 -13.3202 1.3165 25 6 3.7195 -12.1610 1.4709 26 6 3.2399 -10.9678 1.0078 27 6 1.9814 -10.9562 0.3826 28 1 -0.4850 0.8401 0.0004 29 1 0.6240 -2.5566 -0.8903 30 1 0.6247 -2.5570 0.8896 31 1 2.8726 -3.6047 0.8877 32 1 2.8712 -3.6039 -0.8923 33 1 0.5427 -4.9307 0.0003 34 1 3.0805 -8.5603 0.0776 35 1 -0.2485 -8.8873 -1.1135 36 1 -1.4806 -11.0014 -1.3249 37 1 3.3541 -14.2562 1.6875 38 1 4.6834 -12.2048 1.9558 39 1 3.8125 -10.0589 1.1192 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000612257879.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:16:14 Heat of formation + Delta-G solvation = -40.074683 kcal Electronic energy + Delta-G solvation = -25998.021798 eV Core-core repulsion = 21930.647130 eV Total energy + Delta-G solvation = -4067.374668 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 347.082 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -42.64178 -41.57033 -40.02079 -38.31926 -37.67763 -36.89059 -36.03217 -34.84960 -33.74698 -31.79874 -31.71654 -30.38705 -27.54320 -25.90706 -25.26423 -25.00277 -23.20492 -22.53522 -21.60358 -20.18847 -19.74643 -18.60631 -18.45617 -18.09467 -17.67866 -17.19433 -17.04638 -16.52059 -16.32598 -16.10664 -15.85085 -15.59552 -15.42973 -15.13403 -14.65325 -14.39972 -14.30740 -14.26337 -13.69275 -13.50837 -13.26299 -13.21629 -12.94950 -12.87678 -12.62374 -12.52294 -12.28732 -11.87105 -11.68715 -11.48451 -11.41924 -11.15260 -10.87675 -10.61716 -10.60284 -10.25267 -9.97656 -8.89693 -8.23374 -6.34177 -0.92520 -0.36214 0.08935 0.76581 0.97002 1.13342 1.43892 1.44157 1.55324 1.71359 2.00913 2.33627 2.46891 2.90016 3.12043 3.12941 3.20202 3.50238 3.60820 3.61068 3.91035 4.08330 4.28788 4.35794 4.37427 4.45750 4.48574 4.68554 4.81871 4.86287 4.90108 4.99518 5.01222 5.10694 5.35626 5.42736 5.55622 5.62912 5.68930 5.78377 6.12448 6.17964 6.45753 6.74997 6.79042 6.82249 7.35502 8.88420 Molecular weight = 347.08amu Principal moments of inertia in cm(-1) A = 0.023973 B = 0.001857 C = 0.001737 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1167.719581 B =15075.374437 C =16114.062637 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.928 5.928 2 C 0.004 3.996 3 Si 0.966 3.034 4 H -0.273 1.273 5 H -0.284 1.284 6 H -0.263 1.263 7 C -0.543 4.543 8 H 0.066 0.934 9 C 0.017 3.983 10 C 0.138 3.862 11 N -0.683 5.683 12 C 0.508 3.492 13 O -0.541 6.541 14 C 0.518 3.482 15 O -0.503 6.503 16 N -0.625 5.625 17 C 0.166 3.834 18 C -0.137 4.137 19 C -0.062 4.062 20 C -0.048 4.048 21 Cl -0.049 7.049 22 C 0.132 3.868 23 N -0.492 5.492 24 C 0.139 3.861 25 C -0.156 4.156 26 C -0.066 4.066 27 C -0.117 4.117 28 H 0.265 0.735 29 H 0.008 0.992 30 H 0.008 0.992 31 H 0.065 0.935 32 H 0.065 0.935 33 H 0.416 0.584 34 H 0.433 0.567 35 H 0.154 0.846 36 H 0.163 0.837 37 H 0.196 0.804 38 H 0.181 0.819 39 H 0.160 0.840 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.673 -28.377 1.291 28.967 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.567 5.567 2 C -0.194 4.194 3 Si 0.790 3.210 4 H -0.199 1.199 5 H -0.209 1.209 6 H -0.187 1.187 7 C -0.582 4.582 8 H 0.084 0.916 9 C -0.020 4.020 10 C 0.015 3.985 11 N -0.334 5.334 12 C 0.287 3.713 13 O -0.419 6.419 14 C 0.301 3.699 15 O -0.377 6.377 16 N -0.271 5.271 17 C 0.069 3.931 18 C -0.158 4.158 19 C -0.083 4.083 20 C -0.076 4.076 21 Cl -0.020 7.020 22 C 0.010 3.990 23 N -0.201 5.201 24 C -0.032 4.032 25 C -0.175 4.175 26 C -0.092 4.092 27 C -0.121 4.121 28 H 0.074 0.926 29 H 0.027 0.973 30 H 0.027 0.973 31 H 0.083 0.917 32 H 0.083 0.917 33 H 0.253 0.747 34 H 0.274 0.726 35 H 0.172 0.828 36 H 0.180 0.820 37 H 0.213 0.787 38 H 0.198 0.802 39 H 0.178 0.822 Dipole moment (debyes) X Y Z Total from point charges 4.906 -29.016 1.126 29.449 hybrid contribution 0.312 1.725 0.041 1.753 sum 5.218 -27.291 1.167 27.810 Atomic orbital electron populations 1.70069 1.07656 1.27985 1.51012 1.25903 0.95761 1.03248 0.94534 0.85429 0.78672 0.78400 0.78452 1.19866 1.20946 1.18707 1.21452 0.93796 0.91519 1.51399 0.91598 1.19187 0.94395 0.91890 0.96562 1.21527 0.95067 0.80399 1.01495 1.46049 1.12080 1.05306 1.69968 1.19824 0.87425 0.85080 0.78936 1.90756 1.13587 1.87590 1.49980 1.20194 0.87394 0.85182 0.77149 1.90765 1.13750 1.87241 1.45941 1.42904 1.12477 1.02730 1.69037 1.17700 0.93834 0.84151 0.97421 1.21388 0.94702 0.99618 1.00108 1.20865 1.00977 0.89221 0.97193 1.20574 0.93134 0.89159 1.04777 1.98359 1.73532 1.33970 1.96172 1.18410 0.93714 0.89092 0.97828 1.68224 1.14128 1.26795 1.10933 1.23741 0.88290 1.00408 0.90796 1.22343 1.02995 0.92035 1.00122 1.21648 0.92625 1.00894 0.94029 1.18504 0.98019 0.92207 1.03332 0.92621 0.97315 0.97331 0.91666 0.91656 0.74684 0.72565 0.82838 0.81953 0.78693 0.80187 0.82248 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -53.59 13.29 21.45 0.28 -53.30 16 2 C 0.00 0.23 5.46 84.65 0.46 0.70 16 3 Si 0.97 42.31 29.54 68.60 2.03 44.34 16 4 H -0.27 -11.63 7.11 99.48 0.71 -10.92 16 5 H -0.28 -12.26 7.11 99.48 0.71 -11.56 16 6 H -0.26 -11.01 7.11 99.48 0.71 -10.31 16 7 C -0.54 -28.89 9.11 25.60 0.23 -28.66 16 8 H 0.07 3.35 7.74 -2.91 -0.02 3.33 16 9 C 0.02 0.82 5.09 29.85 0.15 0.98 16 10 C 0.14 5.30 5.61 86.38 0.48 5.79 16 11 N -0.68 -22.16 5.55 -464.54 -2.58 -24.74 16 12 C 0.51 14.93 7.88 87.23 0.69 15.62 16 13 O -0.54 -17.41 16.48 -3.29 -0.05 -17.47 16 14 C 0.52 13.04 7.68 87.23 0.67 13.71 16 15 O -0.50 -14.21 13.65 -3.35 -0.05 -14.26 16 16 N -0.63 -12.40 5.15 -304.22 -1.57 -13.97 16 17 C 0.17 3.41 6.44 38.58 0.25 3.66 16 18 C -0.14 -2.93 8.70 22.41 0.20 -2.74 16 19 C -0.06 -1.19 9.69 22.01 0.21 -0.98 16 20 C -0.05 -1.02 6.33 22.40 0.14 -0.88 16 21 Cl -0.05 -1.00 28.50 -2.72 -0.08 -1.08 16 22 C 0.13 2.81 6.60 40.28 0.27 3.08 16 23 N -0.49 -9.60 9.81 -188.64 -1.85 -11.45 16 24 C 0.14 1.64 11.14 85.05 0.95 2.58 16 25 C -0.16 -1.37 10.03 22.15 0.22 -1.15 16 26 C -0.07 -0.84 9.55 22.46 0.21 -0.62 16 27 C -0.12 -2.20 5.75 -21.19 -0.12 -2.32 16 28 H 0.26 14.45 8.31 -92.71 -0.77 13.68 16 29 H 0.01 0.43 8.14 -2.39 -0.02 0.41 16 30 H 0.01 0.43 8.14 -2.39 -0.02 0.41 16 31 H 0.07 2.52 8.14 -2.39 -0.02 2.50 16 32 H 0.07 2.53 8.14 -2.39 -0.02 2.51 16 33 H 0.42 12.91 7.94 -92.71 -0.74 12.17 16 34 H 0.43 6.79 6.75 -92.71 -0.63 6.16 16 35 H 0.15 3.51 5.76 -2.91 -0.02 3.49 16 36 H 0.16 2.41 8.06 -2.91 -0.02 2.39 16 37 H 0.20 0.85 8.06 -2.91 -0.02 0.83 16 38 H 0.18 0.23 8.06 -2.91 -0.02 0.20 16 39 H 0.16 1.30 6.77 -2.91 -0.02 1.28 16 Total: -1.00 -67.51 358.37 0.94 -66.58 By element: Atomic # 1 Polarization: 16.81 SS G_CDS: -0.22 Total: 16.59 kcal Atomic # 6 Polarization: 3.75 SS G_CDS: 5.02 Total: 8.76 kcal Atomic # 7 Polarization: -97.76 SS G_CDS: -5.71 Total: -103.47 kcal Atomic # 8 Polarization: -31.62 SS G_CDS: -0.10 Total: -31.72 kcal Atomic # 14 Polarization: 42.31 SS G_CDS: 2.03 Total: 44.34 kcal Atomic # 17 Polarization: -1.00 SS G_CDS: -0.08 Total: -1.08 kcal Total: -67.51 0.94 -66.58 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000612257879.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.501 kcal (2) G-P(sol) polarization free energy of solvation -67.513 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -41.012 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.937 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.576 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.075 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds