Wall clock time and date at job start Wed Apr 1 2020 04:14:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81397 * 1 3 3 O 1.42101 * 108.58155 * 2 1 4 4 O 1.42099 * 108.57864 * 228.97079 * 2 1 3 5 5 C 1.81402 * 101.92248 * 114.48691 * 2 1 3 6 6 C 1.52996 * 109.47356 * 180.02562 * 5 2 1 7 7 C 1.53002 * 109.47194 * 180.02562 * 6 5 2 8 8 N 1.46505 * 109.47278 * 179.97438 * 7 6 5 9 9 S 1.65597 * 120.00072 * 164.99641 * 8 7 6 10 10 O 1.42098 * 106.40087 * 311.45861 * 9 8 7 11 11 O 1.42098 * 106.39917 * 178.54168 * 9 8 7 12 12 C 1.76200 * 107.21637 * 65.00174 * 9 8 7 13 13 C 1.38663 * 119.87357 * 270.24777 * 12 9 8 14 14 C 1.38609 * 120.49761 * 180.30197 * 13 12 9 15 15 C 1.37636 * 120.25144 * 359.45034 * 14 13 12 16 16 C 1.40702 * 119.74414 * 0.27080 * 15 14 13 17 17 C 1.41389 * 120.24759 * 179.97438 * 16 15 14 18 18 H 1.08002 * 120.00485 * 204.39220 * 17 16 15 19 19 C 1.39942 * 119.99857 * 24.38333 * 17 16 15 20 20 N 1.30830 * 119.99921 * 17.87213 * 19 17 16 21 21 Si 1.86807 * 120.00314 * 197.86702 * 19 17 16 22 22 H 1.48500 * 109.46633 * 0.02562 * 21 19 17 23 23 H 1.48504 * 109.46828 * 120.00062 * 21 19 17 24 24 H 1.48497 * 109.47200 * 240.00400 * 21 19 17 25 25 C 1.37598 * 119.87586 * 90.00318 * 12 9 8 26 26 H 1.08999 * 109.46770 * 305.51826 * 1 2 3 27 27 H 1.08996 * 109.47070 * 65.51213 * 1 2 3 28 28 H 1.08994 * 109.47072 * 185.51691 * 1 2 3 29 29 H 1.08997 * 109.46991 * 59.99685 * 5 2 1 30 30 H 1.08998 * 109.47214 * 299.99863 * 5 2 1 31 31 H 1.08997 * 109.47419 * 59.99835 * 6 5 2 32 32 H 1.09003 * 109.46770 * 299.99540 * 6 5 2 33 33 H 1.08997 * 109.47200 * 59.99545 * 7 6 5 34 34 H 1.09003 * 109.46759 * 299.99391 * 7 6 5 35 35 H 0.97007 * 119.99457 * 345.00054 * 8 7 6 36 36 H 1.08001 * 119.74681 * 0.04757 * 13 12 9 37 37 H 1.08003 * 119.87315 * 179.72263 * 14 13 12 38 38 H 1.07999 * 120.13059 * 180.25214 * 15 14 13 39 39 H 0.97008 * 119.99884 * 179.97438 * 20 19 17 40 40 H 1.07997 * 120.12829 * 359.97438 * 25 12 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 8 2.2668 1.3469 0.0000 4 8 2.2667 -0.8842 -1.0161 5 6 2.1887 -0.7357 1.6152 6 6 3.7054 -0.8184 1.7985 7 6 4.0215 -1.4395 3.1606 8 7 5.4738 -1.5193 3.3358 9 16 6.1126 -1.7963 4.8383 10 8 5.4699 -0.8873 5.7213 11 8 7.5225 -1.8517 4.6708 12 6 5.6062 -3.4106 5.3307 13 6 4.4176 -3.5799 6.0246 14 6 4.0099 -4.8431 6.4237 15 6 4.7771 -5.9461 6.1247 16 6 5.9821 -5.7869 5.4160 17 6 6.7787 -6.9124 5.1036 18 1 7.8381 -6.7931 4.9307 19 6 6.1945 -8.1812 5.0186 20 7 4.8990 -8.2967 4.8776 21 14 7.2644 -9.7100 5.1063 22 1 8.6858 -9.3108 5.2663 23 1 6.8497 -10.5385 6.2669 24 1 7.1082 -10.4959 3.8560 25 6 6.3891 -4.4988 5.0209 26 1 -0.3633 0.5970 0.8365 27 1 -0.3633 0.4260 -0.9352 28 1 -0.3633 -1.0228 0.0988 29 1 1.7610 -1.7369 1.6665 30 1 1.7611 -0.1171 2.4043 31 1 4.1328 0.1830 1.7474 32 1 4.1335 -1.4369 1.0095 33 1 3.5942 -2.4409 3.2112 34 1 3.5934 -0.8214 3.9498 35 1 6.0612 -1.4098 2.5716 36 1 3.8071 -2.7206 6.2594 37 1 3.0845 -4.9629 6.9676 38 1 4.4555 -6.9299 6.4330 39 1 4.4940 -9.1762 4.8183 40 1 7.3122 -4.3652 4.4766 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000619478096.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:14:22 Heat of formation + Delta-G solvation = -135.082221 kcal Electronic energy + Delta-G solvation = -25591.840289 eV Core-core repulsion = 21625.540692 eV Total energy + Delta-G solvation = -3966.299597 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 347.074 amu Computer time = 2.35 seconds Orbital eigenvalues (eV) -37.68948 -37.27735 -36.86244 -36.46492 -36.23545 -35.34421 -33.89195 -32.59621 -30.12477 -30.01626 -29.83652 -26.29724 -25.53098 -22.29852 -21.88854 -21.02182 -19.28482 -19.04626 -18.03095 -17.23956 -16.94921 -16.64122 -16.29155 -15.99151 -15.72446 -15.45173 -15.10540 -14.79932 -14.39679 -13.78681 -13.62215 -13.53957 -13.40941 -13.29498 -13.13692 -12.63013 -12.37873 -12.28780 -12.26525 -11.95351 -11.68711 -11.65018 -11.61880 -11.45868 -11.41752 -11.40357 -11.35967 -11.02920 -10.94206 -10.68115 -10.62138 -9.83779 -9.72054 -9.39732 -9.22358 -8.09227 -7.75501 -6.97517 -4.57839 -0.37911 0.98007 2.14393 2.38996 2.58249 2.98028 3.01116 3.04918 3.24673 3.52645 3.66119 3.79964 4.19436 4.27757 4.31384 4.38700 4.40941 4.61765 4.64861 4.96274 5.08886 5.21863 5.26512 5.35663 5.40918 5.58715 5.78698 5.97547 6.04158 6.12323 6.61052 6.71478 6.79523 6.98632 7.13315 7.18255 7.33468 7.67565 7.76935 7.89777 8.36205 8.62528 8.67325 9.97840 Molecular weight = 347.07amu Principal moments of inertia in cm(-1) A = 0.012083 B = 0.002743 C = 0.002452 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2316.797556 B =10205.949079 C =11417.092157 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.657 4.657 2 S 2.422 3.578 3 O -0.940 6.940 4 O -0.938 6.938 5 C -0.611 4.611 6 C -0.120 4.120 7 C 0.126 3.874 8 N -1.123 6.123 9 S 2.690 3.310 10 O -0.975 6.975 11 O -0.971 6.971 12 C -0.632 4.632 13 C -0.152 4.152 14 C -0.120 4.120 15 C -0.119 4.119 16 C 0.091 3.909 17 C -0.459 4.459 18 H 0.084 0.916 19 C 0.075 3.925 20 N -0.793 5.793 21 Si 0.911 3.089 22 H -0.258 1.258 23 H -0.271 1.271 24 H -0.273 1.273 25 C -0.123 4.123 26 H 0.128 0.872 27 H 0.128 0.872 28 H 0.129 0.871 29 H 0.139 0.861 30 H 0.138 0.862 31 H 0.088 0.912 32 H 0.089 0.911 33 H 0.075 0.925 34 H 0.082 0.918 35 H 0.415 0.585 36 H 0.106 0.894 37 H 0.098 0.902 38 H 0.125 0.875 39 H 0.283 0.717 40 H 0.112 0.888 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.212 10.284 -6.989 16.091 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.807 4.807 2 S 2.604 3.396 3 O -0.937 6.937 4 O -0.935 6.935 5 C -0.741 4.741 6 C -0.160 4.160 7 C -0.001 4.001 8 N -0.882 5.882 9 S 2.786 3.214 10 O -0.965 6.965 11 O -0.961 6.961 12 C -0.724 4.724 13 C -0.173 4.173 14 C -0.140 4.140 15 C -0.139 4.139 16 C 0.088 3.912 17 C -0.488 4.488 18 H 0.102 0.898 19 C -0.143 4.143 20 N -0.419 5.419 21 Si 0.735 3.265 22 H -0.182 1.182 23 H -0.196 1.196 24 H -0.198 1.198 25 C -0.145 4.145 26 H 0.147 0.853 27 H 0.147 0.853 28 H 0.148 0.852 29 H 0.158 0.842 30 H 0.156 0.844 31 H 0.107 0.893 32 H 0.108 0.892 33 H 0.093 0.907 34 H 0.101 0.899 35 H 0.249 0.751 36 H 0.124 0.876 37 H 0.116 0.884 38 H 0.143 0.857 39 H 0.094 0.906 40 H 0.130 0.870 Dipole moment (debyes) X Y Z Total from point charges -9.434 11.013 -7.073 16.135 hybrid contribution -0.540 -1.831 0.245 1.925 sum -9.974 9.182 -6.827 15.179 Atomic orbital electron populations 1.30277 1.26931 1.11701 1.11751 1.07802 0.78252 0.75791 0.77735 1.93607 1.79000 1.34572 1.86555 1.93618 1.78930 1.66946 1.54002 1.30307 1.05772 1.14715 1.23291 1.21506 0.91021 1.03767 0.99667 1.21194 0.80174 1.01697 0.97055 1.55586 1.14177 1.90084 1.28311 1.01625 0.72828 0.74818 0.72120 1.93509 1.77114 1.62654 1.63230 1.93544 1.29166 1.87987 1.85433 1.29733 1.06937 1.19517 1.16172 1.20068 0.95847 0.96938 1.04456 1.20801 0.99019 0.93139 1.01016 1.21639 0.96308 0.97874 0.98084 1.17698 0.92283 0.91754 0.89508 1.19668 0.96461 0.90898 1.41754 0.89818 1.25945 0.95278 1.01210 0.91896 1.69787 1.11519 1.26471 1.34074 0.86198 0.81284 0.80258 0.78712 1.18180 1.19586 1.19823 1.20795 0.99182 0.92226 1.02254 0.85291 0.85332 0.85208 0.84240 0.84407 0.89294 0.89206 0.90679 0.89930 0.75117 0.87643 0.88420 0.85742 0.90611 0.86989 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 51. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.66 -2.16 10.62 101.05 1.07 -1.08 16 2 S 2.42 16.24 5.36 -107.50 -0.58 15.67 16 3 O -0.94 -9.93 18.10 -57.83 -1.05 -10.97 16 4 O -0.94 -10.24 18.10 -57.83 -1.05 -11.28 16 5 C -0.61 -3.49 5.81 37.16 0.22 -3.28 16 6 C -0.12 -1.06 5.36 -26.73 -0.14 -1.21 16 7 C 0.13 1.45 6.22 -4.04 -0.03 1.43 16 8 N -1.12 -15.32 6.00 -10.61 -0.06 -15.38 16 9 S 2.69 48.62 5.73 -107.50 -0.62 48.00 16 10 O -0.98 -19.08 16.74 -57.17 -0.96 -20.04 16 11 O -0.97 -19.95 17.27 -57.17 -0.99 -20.94 16 12 C -0.63 -13.31 5.94 -39.66 -0.24 -13.54 16 13 C -0.15 -3.14 9.53 -39.29 -0.37 -3.52 16 14 C -0.12 -2.60 10.02 -39.66 -0.40 -2.99 16 15 C -0.12 -2.89 8.70 -38.87 -0.34 -3.23 16 16 C 0.09 2.30 5.58 -106.82 -0.60 1.71 16 17 C -0.46 -11.57 9.05 -37.75 -0.34 -11.91 16 18 H 0.08 2.05 7.91 -52.49 -0.41 1.63 16 19 C 0.07 1.77 5.14 -17.34 -0.09 1.68 16 20 N -0.79 -19.14 10.95 55.55 0.61 -18.53 16 21 Si 0.91 17.76 29.60 -169.99 -5.03 12.73 16 22 H -0.26 -5.04 7.11 56.52 0.40 -4.64 16 23 H -0.27 -5.19 7.11 56.52 0.40 -4.79 16 24 H -0.27 -5.24 7.11 56.52 0.40 -4.83 16 25 C -0.12 -2.89 9.26 -38.87 -0.36 -3.25 16 26 H 0.13 0.20 8.14 -51.92 -0.42 -0.22 16 27 H 0.13 0.38 8.14 -51.93 -0.42 -0.04 16 28 H 0.13 0.24 8.14 -51.93 -0.42 -0.18 16 29 H 0.14 0.54 8.14 -51.93 -0.42 0.12 16 30 H 0.14 0.46 8.14 -51.92 -0.42 0.04 16 31 H 0.09 0.73 8.14 -51.93 -0.42 0.31 16 32 H 0.09 0.76 8.14 -51.93 -0.42 0.34 16 33 H 0.07 0.86 8.14 -51.93 -0.42 0.44 16 34 H 0.08 0.90 7.75 -51.93 -0.40 0.50 16 35 H 0.42 4.70 8.65 -34.48 -0.30 4.41 16 36 H 0.11 1.93 7.61 -52.49 -0.40 1.53 16 37 H 0.10 1.82 8.06 -52.48 -0.42 1.40 16 38 H 0.12 3.07 6.15 -52.49 -0.32 2.75 16 39 H 0.28 6.17 8.30 -40.82 -0.34 5.83 16 40 H 0.11 2.53 7.60 -52.49 -0.40 2.13 16 LS Contribution 367.56 15.07 5.54 5.54 Total: -1.00 -36.71 367.56 -10.96 -47.68 By element: Atomic # 1 Polarization: 11.89 SS G_CDS: -5.18 Total: 6.72 kcal Atomic # 6 Polarization: -37.58 SS G_CDS: -1.61 Total: -39.19 kcal Atomic # 7 Polarization: -34.46 SS G_CDS: 0.54 Total: -33.91 kcal Atomic # 8 Polarization: -59.19 SS G_CDS: -4.04 Total: -63.23 kcal Atomic # 14 Polarization: 17.76 SS G_CDS: -5.03 Total: 12.73 kcal Atomic # 16 Polarization: 64.86 SS G_CDS: -1.19 Total: 63.67 kcal Total LS contribution 5.54 Total: 5.54 kcal Total: -36.71 -10.96 -47.68 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000619478096.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -87.406 kcal (2) G-P(sol) polarization free energy of solvation -36.712 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -124.118 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.964 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.677 kcal (6) G-S(sol) free energy of system = (1) + (5) -135.082 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.35 seconds