Wall clock time and date at job start Wed Apr 1 2020 04:14:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81397 * 1 3 3 O 1.42101 * 108.58155 * 2 1 4 4 O 1.42099 * 108.57864 * 228.97079 * 2 1 3 5 5 C 1.81402 * 101.92248 * 114.48691 * 2 1 3 6 6 C 1.52996 * 109.47356 * 180.02562 * 5 2 1 7 7 C 1.53002 * 109.47194 * 180.02562 * 6 5 2 8 8 N 1.46505 * 109.47278 * 179.97438 * 7 6 5 9 9 S 1.65597 * 120.00072 * 164.99641 * 8 7 6 10 10 O 1.42098 * 106.40087 * 311.45861 * 9 8 7 11 11 O 1.42098 * 106.39917 * 178.54168 * 9 8 7 12 12 C 1.76200 * 107.21637 * 65.00174 * 9 8 7 13 13 C 1.38663 * 119.87357 * 270.24777 * 12 9 8 14 14 C 1.38609 * 120.49761 * 180.30197 * 13 12 9 15 15 C 1.37636 * 120.25144 * 359.45034 * 14 13 12 16 16 C 1.40702 * 119.74414 * 0.27080 * 15 14 13 17 17 C 1.41389 * 120.24759 * 179.97438 * 16 15 14 18 18 H 1.08002 * 120.00485 * 204.39220 * 17 16 15 19 19 C 1.39942 * 119.99857 * 24.38333 * 17 16 15 20 20 N 1.30830 * 119.99921 * 17.87213 * 19 17 16 21 21 Si 1.86807 * 120.00314 * 197.86702 * 19 17 16 22 22 H 1.48500 * 109.46633 * 0.02562 * 21 19 17 23 23 H 1.48504 * 109.46828 * 120.00062 * 21 19 17 24 24 H 1.48497 * 109.47200 * 240.00400 * 21 19 17 25 25 C 1.37598 * 119.87586 * 90.00318 * 12 9 8 26 26 H 1.08999 * 109.46770 * 305.51826 * 1 2 3 27 27 H 1.08996 * 109.47070 * 65.51213 * 1 2 3 28 28 H 1.08994 * 109.47072 * 185.51691 * 1 2 3 29 29 H 1.08997 * 109.46991 * 59.99685 * 5 2 1 30 30 H 1.08998 * 109.47214 * 299.99863 * 5 2 1 31 31 H 1.08997 * 109.47419 * 59.99835 * 6 5 2 32 32 H 1.09003 * 109.46770 * 299.99540 * 6 5 2 33 33 H 1.08997 * 109.47200 * 59.99545 * 7 6 5 34 34 H 1.09003 * 109.46759 * 299.99391 * 7 6 5 35 35 H 0.97007 * 119.99457 * 345.00054 * 8 7 6 36 36 H 1.08001 * 119.74681 * 0.04757 * 13 12 9 37 37 H 1.08003 * 119.87315 * 179.72263 * 14 13 12 38 38 H 1.07999 * 120.13059 * 180.25214 * 15 14 13 39 39 H 0.97008 * 119.99884 * 179.97438 * 20 19 17 40 40 H 1.07997 * 120.12829 * 359.97438 * 25 12 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 8 2.2668 1.3469 0.0000 4 8 2.2667 -0.8842 -1.0161 5 6 2.1887 -0.7357 1.6152 6 6 3.7054 -0.8184 1.7985 7 6 4.0215 -1.4395 3.1606 8 7 5.4738 -1.5193 3.3358 9 16 6.1126 -1.7963 4.8383 10 8 5.4699 -0.8873 5.7213 11 8 7.5225 -1.8517 4.6708 12 6 5.6062 -3.4106 5.3307 13 6 4.4176 -3.5799 6.0246 14 6 4.0099 -4.8431 6.4237 15 6 4.7771 -5.9461 6.1247 16 6 5.9821 -5.7869 5.4160 17 6 6.7787 -6.9124 5.1036 18 1 7.8381 -6.7931 4.9307 19 6 6.1945 -8.1812 5.0186 20 7 4.8990 -8.2967 4.8776 21 14 7.2644 -9.7100 5.1063 22 1 8.6858 -9.3108 5.2663 23 1 6.8497 -10.5385 6.2669 24 1 7.1082 -10.4959 3.8560 25 6 6.3891 -4.4988 5.0209 26 1 -0.3633 0.5970 0.8365 27 1 -0.3633 0.4260 -0.9352 28 1 -0.3633 -1.0228 0.0988 29 1 1.7610 -1.7369 1.6665 30 1 1.7611 -0.1171 2.4043 31 1 4.1328 0.1830 1.7474 32 1 4.1335 -1.4369 1.0095 33 1 3.5942 -2.4409 3.2112 34 1 3.5934 -0.8214 3.9498 35 1 6.0612 -1.4098 2.5716 36 1 3.8071 -2.7206 6.2594 37 1 3.0845 -4.9629 6.9676 38 1 4.4555 -6.9299 6.4330 39 1 4.4940 -9.1762 4.8183 40 1 7.3122 -4.3652 4.4766 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000619478096.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:14:21 Heat of formation + Delta-G solvation = -164.591832 kcal Electronic energy + Delta-G solvation = -25593.119922 eV Core-core repulsion = 21625.540692 eV Total energy + Delta-G solvation = -3967.579230 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 347.074 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -39.44032 -38.30950 -37.93022 -37.42357 -36.94699 -36.90218 -35.66587 -33.42518 -31.90643 -31.57691 -30.32065 -27.35852 -27.06857 -23.68265 -23.03769 -22.72550 -20.61863 -19.77918 -19.58316 -18.44956 -17.88825 -17.71598 -17.21228 -17.01531 -16.85895 -16.69357 -16.52097 -16.05978 -15.76547 -15.20651 -15.04512 -14.30427 -14.28173 -14.04460 -13.84137 -13.83712 -13.68121 -13.31534 -13.18851 -13.09787 -13.05620 -13.03895 -12.97442 -12.96114 -12.83629 -12.79118 -12.60973 -12.22397 -12.11459 -11.90252 -11.54787 -11.34637 -11.27236 -11.14718 -10.43993 -9.84302 -9.55416 -8.73832 -6.45092 -0.86812 -0.47717 0.41071 0.84726 1.37417 1.44135 1.51872 1.95729 2.13296 2.17540 2.55496 2.77719 2.82155 3.20683 3.45574 3.53165 3.70487 3.87547 3.93269 4.17619 4.27782 4.32023 4.44792 4.47439 4.59566 4.61009 4.83064 4.86055 4.91321 4.99531 5.05143 5.06988 5.17920 5.21643 5.41588 5.57295 5.89461 5.94677 6.08830 6.12217 6.53239 6.79825 6.85126 8.24064 Molecular weight = 347.07amu Principal moments of inertia in cm(-1) A = 0.012083 B = 0.002743 C = 0.002452 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2316.797556 B =10205.949079 C =11417.092157 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.637 4.637 2 S 2.424 3.576 3 O -0.988 6.988 4 O -0.991 6.991 5 C -0.605 4.605 6 C -0.129 4.129 7 C 0.113 3.887 8 N -1.111 6.111 9 S 2.721 3.279 10 O -0.983 6.983 11 O -0.998 6.998 12 C -0.638 4.638 13 C -0.145 4.145 14 C -0.121 4.121 15 C -0.141 4.141 16 C 0.061 3.939 17 C -0.499 4.499 18 H 0.076 0.924 19 C 0.039 3.961 20 N -0.819 5.819 21 Si 0.981 3.019 22 H -0.262 1.262 23 H -0.262 1.262 24 H -0.264 1.264 25 C -0.147 4.147 26 H 0.155 0.845 27 H 0.134 0.866 28 H 0.152 0.848 29 H 0.162 0.838 30 H 0.169 0.831 31 H 0.092 0.908 32 H 0.087 0.913 33 H 0.076 0.924 34 H 0.095 0.905 35 H 0.426 0.574 36 H 0.137 0.863 37 H 0.129 0.871 38 H 0.113 0.887 39 H 0.292 0.708 40 H 0.107 0.893 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.427 10.854 -6.705 17.810 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.790 4.790 2 S 2.612 3.388 3 O -0.985 6.985 4 O -0.988 6.988 5 C -0.736 4.736 6 C -0.169 4.169 7 C -0.013 4.013 8 N -0.874 5.874 9 S 2.814 3.186 10 O -0.973 6.973 11 O -0.988 6.988 12 C -0.727 4.727 13 C -0.166 4.166 14 C -0.140 4.140 15 C -0.161 4.161 16 C 0.058 3.942 17 C -0.528 4.528 18 H 0.094 0.906 19 C -0.176 4.176 20 N -0.445 5.445 21 Si 0.801 3.199 22 H -0.186 1.186 23 H -0.186 1.186 24 H -0.188 1.188 25 C -0.168 4.168 26 H 0.173 0.827 27 H 0.153 0.847 28 H 0.170 0.830 29 H 0.180 0.820 30 H 0.187 0.813 31 H 0.111 0.889 32 H 0.105 0.895 33 H 0.094 0.906 34 H 0.113 0.887 35 H 0.263 0.737 36 H 0.155 0.845 37 H 0.147 0.853 38 H 0.131 0.869 39 H 0.103 0.897 40 H 0.125 0.875 Dipole moment (debyes) X Y Z Total from point charges -11.625 11.571 -6.795 17.754 hybrid contribution 0.000 -1.859 0.162 1.866 sum -11.625 9.712 -6.634 16.537 Atomic orbital electron populations 1.30083 1.21663 1.13890 1.13369 1.07375 0.79979 0.74098 0.77369 1.93546 1.81113 1.36617 1.87217 1.93553 1.81148 1.67698 1.56399 1.30261 1.03692 1.16653 1.22992 1.21562 0.93577 1.03743 0.98014 1.21524 0.78372 1.02407 0.99005 1.55261 1.15732 1.89217 1.27181 1.00718 0.71898 0.73312 0.72715 1.93493 1.77215 1.62058 1.64567 1.93504 1.31241 1.87916 1.86154 1.30240 1.06507 1.20669 1.15319 1.20505 0.95662 0.97647 1.02778 1.21158 0.99689 0.92717 1.00469 1.21654 0.96816 0.98386 0.99232 1.18044 0.93182 0.92651 0.90307 1.19865 0.96362 0.92381 1.44172 0.90632 1.26689 0.96516 1.03469 0.90966 1.69808 1.12733 1.27678 1.34265 0.85173 0.79090 0.76452 0.79145 1.18590 1.18635 1.18849 1.20852 0.99831 0.92677 1.03404 0.82655 0.84726 0.83001 0.81965 0.81348 0.88943 0.89482 0.90555 0.88723 0.73718 0.84502 0.85293 0.86926 0.89726 0.87470 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 21. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.64 -1.90 10.62 113.37 1.20 -0.69 16 2 S 2.42 29.20 5.36 -56.49 -0.30 28.90 16 3 O -0.99 -20.41 18.10 -127.37 -2.31 -22.72 16 4 O -0.99 -21.60 18.10 -127.37 -2.30 -23.91 16 5 C -0.61 -5.14 5.81 71.98 0.42 -4.72 16 6 C -0.13 -2.06 5.36 30.59 0.16 -1.89 16 7 C 0.11 2.34 6.22 86.38 0.54 2.88 16 8 N -1.11 -28.68 6.00 -187.48 -1.12 -29.80 16 9 S 2.72 95.23 5.73 -56.49 -0.32 94.91 16 10 O -0.98 -36.32 16.74 -128.00 -2.14 -38.46 16 11 O -1.00 -40.84 17.27 -128.00 -2.21 -43.05 16 12 C -0.64 -26.54 5.94 22.22 0.13 -26.41 16 13 C -0.15 -5.73 9.53 22.46 0.21 -5.52 16 14 C -0.12 -5.08 10.02 22.22 0.22 -4.86 16 15 C -0.14 -6.94 8.70 22.73 0.20 -6.74 16 16 C 0.06 3.21 5.58 -21.29 -0.12 3.09 16 17 C -0.50 -26.20 9.05 23.46 0.21 -25.99 16 18 H 0.08 3.91 7.91 -2.91 -0.02 3.88 16 19 C 0.04 1.90 5.14 85.25 0.44 2.34 16 20 N -0.82 -40.15 10.95 21.83 0.24 -39.91 16 21 Si 0.98 36.83 29.60 68.60 2.03 38.86 16 22 H -0.26 -9.88 7.11 99.48 0.71 -9.18 16 23 H -0.26 -9.38 7.11 99.48 0.71 -8.67 16 24 H -0.26 -9.45 7.11 99.48 0.71 -8.74 16 25 C -0.15 -7.06 9.26 22.73 0.21 -6.85 16 26 H 0.16 -0.26 8.14 -2.39 -0.02 -0.28 16 27 H 0.13 0.39 8.14 -2.39 -0.02 0.37 16 28 H 0.15 -0.11 8.14 -2.39 -0.02 -0.13 16 29 H 0.16 0.66 8.14 -2.39 -0.02 0.64 16 30 H 0.17 0.40 8.14 -2.39 -0.02 0.38 16 31 H 0.09 1.39 8.14 -2.39 -0.02 1.37 16 32 H 0.09 1.41 8.14 -2.39 -0.02 1.39 16 33 H 0.08 1.57 8.14 -2.39 -0.02 1.55 16 34 H 0.09 1.74 7.75 -2.39 -0.02 1.72 16 35 H 0.43 9.23 8.65 -96.74 -0.84 8.39 16 36 H 0.14 4.51 7.61 -2.91 -0.02 4.49 16 37 H 0.13 4.49 8.06 -2.91 -0.02 4.47 16 38 H 0.11 5.71 6.15 -2.91 -0.02 5.69 16 39 H 0.29 12.78 8.30 -92.70 -0.77 12.01 16 40 H 0.11 5.09 7.60 -2.91 -0.02 5.06 16 Total: -1.00 -81.73 367.56 -4.38 -86.11 By element: Atomic # 1 Polarization: 24.22 SS G_CDS: 0.23 Total: 24.45 kcal Atomic # 6 Polarization: -79.21 SS G_CDS: 3.83 Total: -75.38 kcal Atomic # 7 Polarization: -68.83 SS G_CDS: -0.89 Total: -69.71 kcal Atomic # 8 Polarization: -119.17 SS G_CDS: -8.96 Total: -128.13 kcal Atomic # 14 Polarization: 36.83 SS G_CDS: 2.03 Total: 38.86 kcal Atomic # 16 Polarization: 124.44 SS G_CDS: -0.63 Total: 123.81 kcal Total: -81.73 -4.38 -86.11 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000619478096.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -78.477 kcal (2) G-P(sol) polarization free energy of solvation -81.734 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -160.211 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.381 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -86.115 kcal (6) G-S(sol) free energy of system = (1) + (5) -164.592 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds