Wall clock time and date at job start Wed Apr 1 2020 04:39:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30825 * 1 3 3 Si 1.86805 * 119.99945 * 2 1 4 4 H 1.48492 * 109.46986 * 275.41523 * 3 2 1 5 5 H 1.48501 * 109.47136 * 35.41467 * 3 2 1 6 6 H 1.48501 * 109.46958 * 155.41510 * 3 2 1 7 7 C 1.39943 * 119.99846 * 180.02562 * 2 1 3 8 8 H 1.07997 * 120.00531 * 341.66981 * 7 2 1 9 9 C 1.41402 * 119.99793 * 161.67194 * 7 2 1 10 10 C 1.40734 * 120.24092 * 150.46246 * 9 7 2 11 11 C 1.37604 * 119.74252 * 180.28293 * 10 9 7 12 12 C 1.38655 * 120.24741 * 359.73691 * 11 10 9 13 13 C 1.38616 * 120.49995 * 359.97438 * 12 11 10 14 14 S 1.76200 * 119.87245 * 179.97438 * 13 12 11 15 15 O 1.42099 * 106.40628 * 23.56404 * 14 13 12 16 16 O 1.42105 * 106.39881 * 156.47918 * 14 13 12 17 17 N 1.65594 * 107.22087 * 270.01946 * 14 13 12 18 18 C 1.47067 * 136.06176 * 269.62965 * 17 14 13 19 19 C 1.53754 * 87.88775 * 152.96406 * 18 17 14 20 20 O 1.42903 * 114.26755 * 139.79675 * 19 18 17 21 21 C 1.42895 * 114.00396 * 116.47161 * 20 19 18 22 22 C 1.52999 * 109.47491 * 180.02562 * 21 20 19 23 23 F 1.39902 * 109.46685 * 300.00020 * 22 21 20 24 24 F 1.39894 * 109.46760 * 59.99928 * 22 21 20 25 25 C 1.47076 * 136.05403 * 90.00341 * 17 14 13 26 26 C 1.37639 * 120.25037 * 0.02562 * 13 12 11 27 27 H 0.97001 * 119.99889 * 359.97438 * 1 2 3 28 28 H 1.08004 * 120.13394 * 0.02562 * 10 9 7 29 29 H 1.08003 * 119.87657 * 179.72682 * 11 10 9 30 30 H 1.07998 * 119.74793 * 179.97438 * 12 11 10 31 31 H 1.08994 * 113.46791 * 267.69747 * 18 17 14 32 32 H 1.09003 * 113.46567 * 38.13915 * 18 17 14 33 33 H 1.09004 * 114.39550 * 272.67748 * 19 18 17 34 34 H 1.09000 * 109.47216 * 300.00270 * 21 20 19 35 35 H 1.09002 * 109.46903 * 60.00171 * 21 20 19 36 36 H 1.09004 * 109.47063 * 180.02562 * 22 21 20 37 37 H 1.09000 * 113.46662 * 321.86260 * 25 17 14 38 38 H 1.08998 * 113.46727 * 92.30886 * 25 17 14 39 39 H 1.07997 * 120.12876 * 179.97438 * 26 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3082 0.0000 0.0000 3 14 2.2423 1.6178 0.0000 4 1 2.3753 2.1125 -1.3938 5 1 1.5016 2.6170 0.8113 6 1 3.5923 1.4099 0.5825 7 6 2.0079 -1.2120 -0.0005 8 1 1.5091 -2.1237 0.2932 9 6 3.3682 -1.2428 -0.3856 10 6 4.2365 -2.2088 0.1562 11 6 5.5596 -2.2258 -0.2214 12 6 6.0369 -1.2995 -1.1360 13 6 5.1893 -0.3474 -1.6806 14 16 5.8135 0.8223 -2.8410 15 8 6.9707 0.2350 -3.4200 16 8 4.6997 1.2621 -3.6061 17 7 6.3371 2.1360 -1.9796 18 6 5.7466 3.3985 -1.5103 19 6 6.7685 3.3836 -0.3616 20 8 7.3258 4.6632 -0.0546 21 6 7.0143 5.1329 1.2585 22 6 7.6583 6.5036 1.4760 23 9 9.0461 6.3941 1.3369 24 9 7.1644 7.4065 0.5284 25 6 7.5993 2.5567 -1.3526 26 6 3.8621 -0.3117 -1.3175 27 1 -0.4850 0.8401 0.0004 28 1 3.8668 -2.9314 0.8687 29 1 6.2288 -2.9634 0.1965 30 1 7.0769 -1.3199 -1.4263 31 1 5.8858 4.2273 -2.2043 32 1 4.7141 3.2969 -1.1759 33 1 6.4458 2.8312 0.5210 34 1 5.9331 5.2186 1.3668 35 1 7.3987 4.4292 1.9968 36 1 7.4211 6.8617 2.4779 37 1 8.1452 1.7379 -0.8841 38 1 8.2269 3.1636 -2.0052 39 1 3.2036 0.4312 -1.7427 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000619490292.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:39:49 Heat of formation + Delta-G solvation = -157.064429 kcal Electronic energy + Delta-G solvation = -28634.155137 eV Core-core repulsion = 24113.061933 eV Total energy + Delta-G solvation = -4521.093204 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 347.084 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -49.17207 -47.20795 -39.90668 -38.01456 -36.96986 -36.82922 -35.48352 -33.85140 -30.79663 -30.47733 -30.28704 -27.63448 -26.18108 -25.44549 -23.30733 -22.33690 -21.58458 -21.19683 -18.67359 -18.31190 -17.90077 -17.71152 -17.29454 -17.05463 -16.80295 -16.46010 -15.90515 -15.24766 -15.17542 -14.87485 -14.34614 -14.18175 -14.14586 -13.95146 -13.60466 -13.55050 -13.39906 -12.94625 -12.84792 -12.66986 -12.38972 -12.09819 -12.04161 -11.76181 -11.72816 -11.63493 -11.47334 -11.41002 -11.13836 -11.05363 -10.95180 -10.54635 -10.12263 -9.87656 -9.81516 -9.38603 -9.08147 -8.42016 -7.93367 -7.16290 -4.72190 0.64808 1.79842 2.36188 2.86751 2.91319 2.94894 3.02465 3.30208 3.55404 3.74859 3.84979 4.02251 4.05923 4.20118 4.21562 4.48525 4.53166 4.63254 4.82709 4.91370 5.07416 5.08736 5.35389 5.44537 5.48693 5.61788 5.65563 5.87864 5.92012 6.17618 6.31265 6.34850 6.54032 6.70615 6.81198 7.01330 7.06323 7.32054 7.44877 7.77672 8.08383 8.34213 8.53630 9.85980 Molecular weight = 347.08amu Principal moments of inertia in cm(-1) A = 0.010962 B = 0.004023 C = 0.003433 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2553.566796 B = 6957.559348 C = 8153.555516 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.796 5.796 2 C 0.086 3.914 3 Si 0.878 3.122 4 H -0.253 1.253 5 H -0.280 1.280 6 H -0.241 1.241 7 C -0.445 4.445 8 H 0.096 0.904 9 C 0.075 3.925 10 C -0.161 4.161 11 C -0.100 4.100 12 C -0.150 4.150 13 C -0.617 4.617 14 S 2.709 3.291 15 O -0.960 6.960 16 O -0.957 6.957 17 N -1.042 6.042 18 C 0.110 3.890 19 C 0.046 3.954 20 O -0.358 6.358 21 C 0.004 3.996 22 C 0.271 3.729 23 F -0.200 7.200 24 F -0.199 7.199 25 C 0.134 3.866 26 C -0.141 4.141 27 H 0.289 0.711 28 H 0.109 0.891 29 H 0.105 0.895 30 H 0.112 0.888 31 H 0.096 0.904 32 H 0.078 0.922 33 H 0.111 0.889 34 H 0.085 0.915 35 H 0.085 0.915 36 H 0.124 0.876 37 H 0.087 0.913 38 H 0.095 0.905 39 H 0.116 0.884 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.144 11.258 6.019 17.619 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.419 5.419 2 C -0.134 4.134 3 Si 0.703 3.297 4 H -0.178 1.178 5 H -0.206 1.206 6 H -0.164 1.164 7 C -0.473 4.473 8 H 0.114 0.886 9 C 0.071 3.929 10 C -0.181 4.181 11 C -0.119 4.119 12 C -0.172 4.172 13 C -0.709 4.709 14 S 2.807 3.193 15 O -0.951 6.951 16 O -0.947 6.947 17 N -0.881 5.881 18 C -0.016 4.016 19 C -0.014 4.014 20 O -0.275 6.275 21 C -0.074 4.074 22 C 0.218 3.782 23 F -0.181 7.181 24 F -0.181 7.181 25 C 0.009 3.991 26 C -0.162 4.162 27 H 0.099 0.901 28 H 0.127 0.873 29 H 0.123 0.877 30 H 0.130 0.870 31 H 0.114 0.886 32 H 0.096 0.904 33 H 0.129 0.871 34 H 0.103 0.897 35 H 0.103 0.897 36 H 0.141 0.859 37 H 0.105 0.895 38 H 0.113 0.887 39 H 0.133 0.867 Dipole moment (debyes) X Y Z Total from point charges 11.952 11.232 4.808 17.092 hybrid contribution -0.272 0.225 0.757 0.835 sum 11.679 11.457 5.565 17.281 Atomic orbital electron populations 1.69663 1.07966 1.30575 1.33734 1.26118 0.94763 1.01516 0.91018 0.86799 0.81782 0.80899 0.80221 1.17838 1.20648 1.16410 1.19511 0.92872 0.96396 1.38536 0.88579 1.17785 0.93390 0.91467 0.90290 1.21335 0.92862 1.02096 1.01808 1.20771 0.95709 0.97915 0.97546 1.20104 0.97680 0.97978 1.01389 1.29911 1.03650 1.16295 1.21039 1.01225 0.73042 0.71832 0.73223 1.93524 1.50406 1.76528 1.74665 1.93560 1.52968 1.81293 1.66908 1.59957 1.22505 1.31495 1.74154 1.23072 0.98372 0.85519 0.94593 1.24389 0.95455 0.84160 0.97419 1.87988 1.74360 1.34913 1.30272 1.23805 1.01397 0.94659 0.87497 1.22026 0.75687 0.88136 0.92388 1.93013 1.31612 1.96556 1.96966 1.93017 1.87235 1.69451 1.68371 1.22636 0.87038 0.96935 0.92517 1.20800 0.92966 1.02881 0.99512 0.90054 0.87324 0.87660 0.87009 0.88563 0.90367 0.87114 0.89723 0.89682 0.85859 0.89493 0.88729 0.86660 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.80 -20.38 13.93 55.55 0.77 -19.61 16 2 C 0.09 2.17 5.40 -17.34 -0.09 2.08 16 3 Si 0.88 18.97 24.10 -169.99 -4.10 14.87 16 4 H -0.25 -5.50 6.71 56.52 0.38 -5.12 16 5 H -0.28 -5.67 7.11 56.52 0.40 -5.26 16 6 H -0.24 -4.97 6.87 56.52 0.39 -4.58 16 7 C -0.45 -11.47 9.57 -37.74 -0.36 -11.83 16 8 H 0.10 2.56 8.06 -52.49 -0.42 2.13 16 9 C 0.07 1.81 5.10 -106.82 -0.55 1.26 16 10 C -0.16 -3.47 9.80 -38.87 -0.38 -3.85 16 11 C -0.10 -1.94 10.02 -39.66 -0.40 -2.34 16 12 C -0.15 -2.99 9.53 -39.29 -0.37 -3.36 16 13 C -0.62 -13.19 5.97 -39.66 -0.24 -13.43 16 14 S 2.71 53.19 6.27 -107.50 -0.67 52.52 16 15 O -0.96 -19.68 17.27 -57.17 -0.99 -20.67 16 16 O -0.96 -21.39 17.27 -57.17 -0.99 -22.37 16 17 N -1.04 -16.36 4.23 -125.03 -0.53 -16.89 16 18 C 0.11 1.49 8.59 -8.37 -0.07 1.42 16 19 C 0.05 0.51 4.68 -26.08 -0.12 0.39 16 20 O -0.36 -3.84 10.29 -35.23 -0.36 -4.20 16 21 C 0.00 0.03 6.00 37.16 0.22 0.26 16 22 C 0.27 1.94 5.63 37.16 0.21 2.15 16 23 F -0.20 -1.96 17.28 2.25 0.04 -1.92 16 24 F -0.20 -2.02 17.28 2.25 0.04 -1.98 16 25 C 0.13 1.62 8.57 -8.50 -0.07 1.55 16 26 C -0.14 -3.33 6.65 -38.88 -0.26 -3.59 16 27 H 0.29 6.67 8.30 -40.82 -0.34 6.33 16 28 H 0.11 2.14 8.06 -52.48 -0.42 1.71 16 29 H 0.11 1.68 8.06 -52.48 -0.42 1.26 16 30 H 0.11 1.98 7.60 -52.49 -0.40 1.58 16 31 H 0.10 1.16 8.14 -51.93 -0.42 0.74 16 32 H 0.08 1.09 7.71 -51.93 -0.40 0.69 16 33 H 0.11 1.13 7.88 -51.93 -0.41 0.72 16 34 H 0.08 0.52 8.14 -51.93 -0.42 0.10 16 35 H 0.09 0.47 8.14 -51.93 -0.42 0.04 16 36 H 0.12 0.35 8.14 -51.93 -0.42 -0.07 16 37 H 0.09 0.92 8.14 -51.93 -0.42 0.50 16 38 H 0.09 1.03 8.14 -51.93 -0.42 0.60 16 39 H 0.12 2.81 4.28 -52.49 -0.22 2.59 16 LS Contribution 352.88 15.07 5.32 5.32 Total: -1.00 -31.90 352.88 -8.36 -40.26 By element: Atomic # 1 Polarization: 8.37 SS G_CDS: -4.41 Total: 3.96 kcal Atomic # 6 Polarization: -26.81 SS G_CDS: -2.48 Total: -29.29 kcal Atomic # 7 Polarization: -36.74 SS G_CDS: 0.24 Total: -36.50 kcal Atomic # 8 Polarization: -44.91 SS G_CDS: -2.34 Total: -47.24 kcal Atomic # 9 Polarization: -3.98 SS G_CDS: 0.08 Total: -3.90 kcal Atomic # 14 Polarization: 18.97 SS G_CDS: -4.10 Total: 14.87 kcal Atomic # 16 Polarization: 53.19 SS G_CDS: -0.67 Total: 52.52 kcal Total LS contribution 5.32 Total: 5.32 kcal Total: -31.90 -8.36 -40.26 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000619490292.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -116.802 kcal (2) G-P(sol) polarization free energy of solvation -31.904 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -148.706 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.358 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.262 kcal (6) G-S(sol) free energy of system = (1) + (5) -157.064 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds