Wall clock time and date at job start Wed Apr 1 2020 04:39:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30825 * 1 3 3 Si 1.86805 * 119.99945 * 2 1 4 4 H 1.48492 * 109.46986 * 275.41523 * 3 2 1 5 5 H 1.48501 * 109.47136 * 35.41467 * 3 2 1 6 6 H 1.48501 * 109.46958 * 155.41510 * 3 2 1 7 7 C 1.39943 * 119.99846 * 180.02562 * 2 1 3 8 8 H 1.07997 * 120.00531 * 341.66981 * 7 2 1 9 9 C 1.41402 * 119.99793 * 161.67194 * 7 2 1 10 10 C 1.40734 * 120.24092 * 150.46246 * 9 7 2 11 11 C 1.37604 * 119.74252 * 180.28293 * 10 9 7 12 12 C 1.38655 * 120.24741 * 359.73691 * 11 10 9 13 13 C 1.38616 * 120.49995 * 359.97438 * 12 11 10 14 14 S 1.76200 * 119.87245 * 179.97438 * 13 12 11 15 15 O 1.42099 * 106.40628 * 23.56404 * 14 13 12 16 16 O 1.42105 * 106.39881 * 156.47918 * 14 13 12 17 17 N 1.65594 * 107.22087 * 270.01946 * 14 13 12 18 18 C 1.47067 * 136.06176 * 269.62965 * 17 14 13 19 19 C 1.53754 * 87.88775 * 152.96406 * 18 17 14 20 20 O 1.42903 * 114.26755 * 139.79675 * 19 18 17 21 21 C 1.42895 * 114.00396 * 116.47161 * 20 19 18 22 22 C 1.52999 * 109.47491 * 180.02562 * 21 20 19 23 23 F 1.39902 * 109.46685 * 300.00020 * 22 21 20 24 24 F 1.39894 * 109.46760 * 59.99928 * 22 21 20 25 25 C 1.47076 * 136.05403 * 90.00341 * 17 14 13 26 26 C 1.37639 * 120.25037 * 0.02562 * 13 12 11 27 27 H 0.97001 * 119.99889 * 359.97438 * 1 2 3 28 28 H 1.08004 * 120.13394 * 0.02562 * 10 9 7 29 29 H 1.08003 * 119.87657 * 179.72682 * 11 10 9 30 30 H 1.07998 * 119.74793 * 179.97438 * 12 11 10 31 31 H 1.08994 * 113.46791 * 267.69747 * 18 17 14 32 32 H 1.09003 * 113.46567 * 38.13915 * 18 17 14 33 33 H 1.09004 * 114.39550 * 272.67748 * 19 18 17 34 34 H 1.09000 * 109.47216 * 300.00270 * 21 20 19 35 35 H 1.09002 * 109.46903 * 60.00171 * 21 20 19 36 36 H 1.09004 * 109.47063 * 180.02562 * 22 21 20 37 37 H 1.09000 * 113.46662 * 321.86260 * 25 17 14 38 38 H 1.08998 * 113.46727 * 92.30886 * 25 17 14 39 39 H 1.07997 * 120.12876 * 179.97438 * 26 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3082 0.0000 0.0000 3 14 2.2423 1.6178 0.0000 4 1 2.3753 2.1125 -1.3938 5 1 1.5016 2.6170 0.8113 6 1 3.5923 1.4099 0.5825 7 6 2.0079 -1.2120 -0.0005 8 1 1.5091 -2.1237 0.2932 9 6 3.3682 -1.2428 -0.3856 10 6 4.2365 -2.2088 0.1562 11 6 5.5596 -2.2258 -0.2214 12 6 6.0369 -1.2995 -1.1360 13 6 5.1893 -0.3474 -1.6806 14 16 5.8135 0.8223 -2.8410 15 8 6.9707 0.2350 -3.4200 16 8 4.6997 1.2621 -3.6061 17 7 6.3371 2.1360 -1.9796 18 6 5.7466 3.3985 -1.5103 19 6 6.7685 3.3836 -0.3616 20 8 7.3258 4.6632 -0.0546 21 6 7.0143 5.1329 1.2585 22 6 7.6583 6.5036 1.4760 23 9 9.0461 6.3941 1.3369 24 9 7.1644 7.4065 0.5284 25 6 7.5993 2.5567 -1.3526 26 6 3.8621 -0.3117 -1.3175 27 1 -0.4850 0.8401 0.0004 28 1 3.8668 -2.9314 0.8687 29 1 6.2288 -2.9634 0.1965 30 1 7.0769 -1.3199 -1.4263 31 1 5.8858 4.2273 -2.2043 32 1 4.7141 3.2969 -1.1759 33 1 6.4458 2.8312 0.5210 34 1 5.9331 5.2186 1.3668 35 1 7.3987 4.4292 1.9968 36 1 7.4211 6.8617 2.4779 37 1 8.1452 1.7379 -0.8841 38 1 8.2269 3.1636 -2.0052 39 1 3.2036 0.4312 -1.7427 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000619490292.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:39:48 Heat of formation + Delta-G solvation = -180.402987 kcal Electronic energy + Delta-G solvation = -28635.167173 eV Core-core repulsion = 24113.061933 eV Total energy + Delta-G solvation = -4522.105240 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 347.084 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -49.78926 -47.85020 -40.84573 -39.73071 -38.43871 -37.78732 -37.09552 -35.65922 -32.56442 -31.96202 -31.10677 -28.66395 -27.29414 -27.11761 -23.98696 -23.85323 -23.09749 -22.40631 -20.07624 -19.64168 -18.96198 -18.60799 -18.40799 -18.32019 -17.68635 -17.34856 -17.18745 -16.85628 -16.63225 -16.18171 -15.69891 -15.29785 -15.21570 -14.94450 -14.87514 -14.67320 -14.54832 -14.22349 -14.13132 -13.79919 -13.57864 -13.54294 -13.38426 -13.28448 -13.05843 -13.04683 -12.88761 -12.71474 -12.66555 -12.27690 -12.21002 -11.81194 -11.76066 -11.51711 -11.15268 -10.64189 -10.27292 -10.08674 -9.68009 -9.00098 -6.62993 -0.84036 0.11079 0.64056 1.15185 1.22912 1.34025 1.78291 2.01177 2.33239 2.43599 2.60983 2.95035 3.02283 3.25294 3.31047 3.43282 3.61575 3.67280 3.94285 4.08677 4.15981 4.27297 4.35823 4.40852 4.46033 4.50917 4.56041 4.59224 4.64995 4.69834 4.77412 4.90047 5.09515 5.28093 5.30205 5.35563 5.63335 5.68520 5.98038 6.05913 6.18037 6.53482 6.68314 8.07631 Molecular weight = 347.08amu Principal moments of inertia in cm(-1) A = 0.010962 B = 0.004023 C = 0.003433 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2553.566796 B = 6957.559348 C = 8153.555516 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.841 5.841 2 C 0.049 3.951 3 Si 0.919 3.081 4 H -0.264 1.264 5 H -0.259 1.259 6 H -0.225 1.225 7 C -0.483 4.483 8 H 0.067 0.933 9 C 0.057 3.943 10 C -0.161 4.161 11 C -0.095 4.095 12 C -0.131 4.131 13 C -0.630 4.630 14 S 2.730 3.270 15 O -0.970 6.970 16 O -0.992 6.992 17 N -1.049 6.049 18 C 0.096 3.904 19 C 0.064 3.936 20 O -0.373 6.373 21 C -0.007 4.007 22 C 0.263 3.737 23 F -0.218 7.218 24 F -0.220 7.220 25 C 0.128 3.872 26 C -0.161 4.161 27 H 0.295 0.705 28 H 0.122 0.878 29 H 0.152 0.848 30 H 0.143 0.857 31 H 0.106 0.894 32 H 0.069 0.931 33 H 0.126 0.874 34 H 0.099 0.901 35 H 0.109 0.891 36 H 0.173 0.827 37 H 0.106 0.894 38 H 0.106 0.894 39 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.465 11.937 7.428 20.901 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.466 5.466 2 C -0.167 4.167 3 Si 0.741 3.259 4 H -0.189 1.189 5 H -0.184 1.184 6 H -0.147 1.147 7 C -0.512 4.512 8 H 0.085 0.915 9 C 0.053 3.947 10 C -0.181 4.181 11 C -0.114 4.114 12 C -0.152 4.152 13 C -0.720 4.720 14 S 2.826 3.174 15 O -0.961 6.961 16 O -0.983 6.983 17 N -0.891 5.891 18 C -0.030 4.030 19 C 0.004 3.996 20 O -0.291 6.291 21 C -0.084 4.084 22 C 0.210 3.790 23 F -0.199 7.199 24 F -0.202 7.202 25 C 0.004 3.996 26 C -0.182 4.182 27 H 0.106 0.894 28 H 0.140 0.860 29 H 0.170 0.830 30 H 0.161 0.839 31 H 0.124 0.876 32 H 0.088 0.912 33 H 0.144 0.856 34 H 0.117 0.883 35 H 0.127 0.873 36 H 0.189 0.811 37 H 0.124 0.876 38 H 0.124 0.876 39 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges 15.279 11.891 6.240 20.342 hybrid contribution -1.056 -0.044 0.296 1.097 sum 14.223 11.847 6.536 19.631 Atomic orbital electron populations 1.69700 1.09051 1.31605 1.36249 1.26781 0.95372 1.04057 0.90485 0.86171 0.81786 0.77975 0.79995 1.18931 1.18432 1.14746 1.19501 0.94266 0.95965 1.41484 0.91455 1.17933 0.93173 0.92758 0.90799 1.21654 0.93712 1.01193 1.01510 1.21251 0.95244 0.98237 0.96620 1.20669 0.98857 0.96183 0.99448 1.30240 1.03027 1.17512 1.21221 1.00374 0.72182 0.71962 0.72847 1.93502 1.50201 1.77342 1.75053 1.93515 1.54634 1.81876 1.68289 1.59597 1.24566 1.30968 1.73925 1.23389 0.98745 0.84701 0.96137 1.24154 0.93867 0.84585 0.97028 1.87967 1.74263 1.34494 1.32378 1.24154 1.02599 0.95195 0.86474 1.22655 0.74524 0.87882 0.93937 1.92975 1.33190 1.96623 1.97128 1.92974 1.87432 1.70237 1.69537 1.22960 0.86014 0.97856 0.92755 1.20703 0.93987 1.03214 1.00315 0.89409 0.85975 0.83046 0.83911 0.87560 0.91223 0.85643 0.88313 0.87271 0.81075 0.87577 0.87604 0.88284 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.84 -45.20 13.93 21.83 0.30 -44.90 16 2 C 0.05 2.56 5.40 85.26 0.46 3.02 16 3 Si 0.92 39.43 24.10 68.60 1.65 41.08 16 4 H -0.26 -11.60 6.71 99.48 0.67 -10.93 16 5 H -0.26 -10.02 7.11 99.48 0.71 -9.31 16 6 H -0.23 -8.89 6.87 99.48 0.68 -8.21 16 7 C -0.48 -26.02 9.57 23.46 0.22 -25.80 16 8 H 0.07 3.84 8.06 -2.91 -0.02 3.82 16 9 C 0.06 2.76 5.10 -21.29 -0.11 2.65 16 10 C -0.16 -6.64 9.80 22.73 0.22 -6.41 16 11 C -0.09 -3.28 10.02 22.22 0.22 -3.05 16 12 C -0.13 -4.68 9.53 22.46 0.21 -4.47 16 13 C -0.63 -25.73 5.97 22.22 0.13 -25.59 16 14 S 2.73 103.09 6.27 -56.49 -0.35 102.74 16 15 O -0.97 -37.47 17.27 -128.00 -2.21 -39.68 16 16 O -0.99 -44.50 17.27 -128.00 -2.21 -46.71 16 17 N -1.05 -30.56 4.23 -549.96 -2.33 -32.88 16 18 C 0.10 2.40 8.59 83.27 0.72 3.12 16 19 C 0.06 1.23 4.68 31.02 0.15 1.38 16 20 O -0.37 -6.88 10.29 -148.98 -1.53 -8.41 16 21 C -0.01 -0.08 6.00 71.98 0.43 0.35 16 22 C 0.26 2.99 5.63 71.98 0.41 3.40 16 23 F -0.22 -3.76 17.28 44.97 0.78 -2.99 16 24 F -0.22 -4.06 17.28 44.97 0.78 -3.28 16 25 C 0.13 2.66 8.57 83.18 0.71 3.38 16 26 C -0.16 -7.62 6.65 22.73 0.15 -7.47 16 27 H 0.30 14.28 8.30 -92.71 -0.77 13.51 16 28 H 0.12 4.62 8.06 -2.91 -0.02 4.59 16 29 H 0.15 3.89 8.06 -2.91 -0.02 3.87 16 30 H 0.14 4.28 7.60 -2.91 -0.02 4.25 16 31 H 0.11 2.40 8.14 -2.39 -0.02 2.38 16 32 H 0.07 1.86 7.71 -2.39 -0.02 1.84 16 33 H 0.13 2.04 7.88 -2.39 -0.02 2.02 16 34 H 0.10 0.86 8.14 -2.39 -0.02 0.84 16 35 H 0.11 0.72 8.14 -2.39 -0.02 0.70 16 36 H 0.17 0.28 8.14 -2.38 -0.02 0.26 16 37 H 0.11 1.79 8.14 -2.39 -0.02 1.77 16 38 H 0.11 1.96 8.14 -2.39 -0.02 1.95 16 39 H 0.10 4.95 4.28 -2.91 -0.01 4.94 16 Total: -1.00 -72.08 352.88 -0.16 -72.24 By element: Atomic # 1 Polarization: 17.27 SS G_CDS: 1.03 Total: 18.29 kcal Atomic # 6 Polarization: -59.44 SS G_CDS: 3.93 Total: -55.51 kcal Atomic # 7 Polarization: -75.76 SS G_CDS: -2.02 Total: -77.78 kcal Atomic # 8 Polarization: -88.85 SS G_CDS: -5.95 Total: -94.80 kcal Atomic # 9 Polarization: -7.82 SS G_CDS: 1.55 Total: -6.27 kcal Atomic # 14 Polarization: 39.43 SS G_CDS: 1.65 Total: 41.08 kcal Atomic # 16 Polarization: 103.09 SS G_CDS: -0.35 Total: 102.74 kcal Total: -72.08 -0.16 -72.24 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000619490292.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -108.164 kcal (2) G-P(sol) polarization free energy of solvation -72.076 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -180.240 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.163 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.239 kcal (6) G-S(sol) free energy of system = (1) + (5) -180.403 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds