Wall clock time and date at job start Wed Apr 1 2020 04:02:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.08992 * 109.47105 * 2 1 4 4 C 1.52998 * 109.47355 * 120.00906 * 2 1 3 5 5 S 1.81398 * 109.47035 * 185.00013 * 4 2 1 6 6 C 1.81403 * 101.91910 * 179.97438 * 5 4 2 7 7 O 1.42098 * 108.57618 * 294.48323 * 5 4 2 8 8 O 1.42091 * 108.58064 * 65.51234 * 5 4 2 9 9 N 1.46508 * 109.46795 * 240.00737 * 2 1 3 10 10 S 1.65598 * 119.99894 * 94.99910 * 9 2 1 11 11 O 1.42100 * 106.39857 * 178.53831 * 10 9 2 12 12 O 1.42101 * 106.40290 * 311.45580 * 10 9 2 13 13 C 1.76197 * 107.21687 * 65.00003 * 10 9 2 14 14 C 1.38659 * 119.87515 * 269.72114 * 13 10 9 15 15 C 1.38611 * 120.50113 * 179.72214 * 14 13 10 16 16 C 1.37644 * 120.24724 * 0.55889 * 15 14 13 17 17 C 1.40698 * 119.74503 * 359.72057 * 16 15 14 18 18 C 1.41396 * 120.24383 * 180.02562 * 17 16 15 19 19 H 1.08003 * 119.99459 * 150.21842 * 18 17 16 20 20 C 1.39941 * 120.00349 * 330.22486 * 18 17 16 21 21 N 1.30815 * 120.00552 * 161.72350 * 20 18 17 22 22 Si 1.86802 * 119.99695 * 341.72432 * 20 18 17 23 23 H 1.48494 * 109.47289 * 95.41281 * 22 20 18 24 24 H 1.48502 * 109.46961 * 215.41131 * 22 20 18 25 25 H 1.48500 * 109.47139 * 335.41147 * 22 20 18 26 26 C 1.37597 * 119.87691 * 90.00281 * 13 10 9 27 27 H 1.08999 * 109.46619 * 299.99210 * 1 2 3 28 28 H 1.08997 * 109.47005 * 59.99422 * 1 2 3 29 29 H 1.09006 * 109.47179 * 179.97438 * 1 2 3 30 30 H 1.09004 * 109.46961 * 304.99911 * 4 2 1 31 31 H 1.08998 * 109.47165 * 64.99799 * 4 2 1 32 32 H 1.09000 * 109.46889 * 60.00245 * 6 5 4 33 33 H 1.09004 * 109.46998 * 179.97438 * 6 5 4 34 34 H 1.08999 * 109.47356 * 299.99939 * 6 5 4 35 35 H 0.97002 * 120.00005 * 274.99590 * 9 2 1 36 36 H 1.07997 * 119.74672 * 0.02562 * 14 13 10 37 37 H 1.07997 * 119.88031 * 180.25835 * 15 14 13 38 38 H 1.08002 * 120.12644 * 179.74698 * 16 15 14 39 39 H 0.96995 * 120.00755 * 179.97438 * 21 20 18 40 40 H 1.08000 * 120.12881 * 359.96816 * 26 13 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0401 -0.7214 1.2491 5 16 3.8480 -0.5934 1.3254 6 6 4.2235 -1.4982 2.8522 7 8 4.3991 -1.3080 0.2278 8 8 4.1978 0.7712 1.5109 9 7 2.0183 -0.6905 -1.1963 10 16 2.4121 0.1775 -2.5505 11 8 2.8775 -0.7631 -3.5086 12 8 1.3245 1.0595 -2.7921 13 6 3.7927 1.1912 -2.1371 14 6 3.5869 2.4675 -1.6358 15 6 4.6634 3.2738 -1.3009 16 6 5.9509 2.8187 -1.4739 17 6 6.1718 1.5275 -1.9873 18 6 7.4899 1.0491 -2.1688 19 1 7.6965 -0.0080 -2.0888 20 6 8.5268 1.9452 -2.4521 21 7 9.7710 1.5845 -2.2705 22 14 8.1340 3.6566 -3.0895 23 1 8.1057 4.6133 -1.9542 24 1 9.1757 4.0736 -4.0623 25 1 6.8085 3.6435 -3.7588 26 6 5.0710 0.7155 -2.3185 27 1 -0.3632 0.5137 0.8901 28 1 -0.3633 0.5139 -0.8899 29 1 -0.3634 -1.0277 -0.0005 30 1 1.6055 -0.2620 2.1369 31 1 1.7517 -1.7717 1.2053 32 1 3.8709 -2.5257 2.7616 33 1 5.3006 -1.4975 3.0193 34 1 3.7247 -1.0157 3.6926 35 1 2.1110 -1.6561 -1.1952 36 1 2.5801 2.8342 -1.5006 37 1 4.4916 4.2647 -0.9073 38 1 6.7883 3.4502 -1.2162 39 1 10.4897 2.2055 -2.4672 40 1 5.2291 -0.2774 -2.7129 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000619493613.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:02:59 Heat of formation + Delta-G solvation = -120.031965 kcal Electronic energy + Delta-G solvation = -27908.012571 eV Core-core repulsion = 23942.365602 eV Total energy + Delta-G solvation = -3965.646969 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 347.074 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -37.80378 -37.30734 -36.81685 -36.55572 -35.75519 -35.36418 -33.65665 -30.84597 -30.60988 -30.02049 -29.67465 -27.85920 -25.27060 -22.31824 -21.92538 -20.76416 -19.42420 -18.80948 -18.03169 -17.27895 -16.68734 -16.57808 -16.18048 -15.90584 -15.51250 -15.22158 -14.84824 -14.55066 -13.88308 -13.70521 -13.68247 -13.33147 -13.27795 -13.03323 -12.95963 -12.76352 -12.44835 -12.12188 -11.85475 -11.81465 -11.77074 -11.64160 -11.59995 -11.57906 -11.38349 -11.22675 -10.95924 -10.91603 -10.69109 -10.63535 -10.25907 -9.92231 -9.72148 -9.47676 -9.11050 -8.13852 -7.72389 -6.96650 -4.49707 -0.04963 0.91022 2.02763 2.56693 2.73758 3.08502 3.19762 3.28996 3.35480 3.65769 3.95743 3.96802 4.11971 4.29110 4.40612 4.50142 4.67381 4.81259 4.86994 4.95146 5.12451 5.23056 5.26977 5.36738 5.48098 5.65453 5.92566 5.97298 6.07761 6.12157 6.33922 6.63063 6.69425 6.99324 7.05787 7.21684 7.34293 7.52473 7.77237 7.91786 8.32652 8.57600 8.75220 10.05620 Molecular weight = 347.07amu Principal moments of inertia in cm(-1) A = 0.012630 B = 0.005331 C = 0.004405 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2216.457505 B = 5250.801578 C = 6354.430698 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.168 3.832 3 H 0.105 0.895 4 C -0.630 4.630 5 S 2.408 3.592 6 C -0.667 4.667 7 O -0.909 6.909 8 O -0.912 6.912 9 N -1.123 6.123 10 S 2.685 3.315 11 O -0.962 6.962 12 O -0.970 6.970 13 C -0.638 4.638 14 C -0.158 4.158 15 C -0.085 4.085 16 C -0.193 4.193 17 C 0.073 3.927 18 C -0.442 4.442 19 H 0.096 0.904 20 C 0.084 3.916 21 N -0.805 5.805 22 Si 0.904 3.096 23 H -0.269 1.269 24 H -0.288 1.288 25 H -0.243 1.243 26 C -0.081 4.081 27 H 0.068 0.932 28 H 0.079 0.921 29 H 0.063 0.937 30 H 0.142 0.858 31 H 0.137 0.863 32 H 0.124 0.876 33 H 0.130 0.870 34 H 0.123 0.877 35 H 0.421 0.579 36 H 0.110 0.890 37 H 0.102 0.898 38 H 0.105 0.895 39 H 0.286 0.714 40 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.432 -4.935 11.241 18.947 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.223 4.223 2 C 0.059 3.941 3 H 0.122 0.878 4 C -0.759 4.759 5 S 2.586 3.414 6 C -0.814 4.814 7 O -0.906 6.906 8 O -0.910 6.910 9 N -0.881 5.881 10 S 2.780 3.220 11 O -0.952 6.952 12 O -0.960 6.960 13 C -0.730 4.730 14 C -0.179 4.179 15 C -0.105 4.105 16 C -0.212 4.212 17 C 0.069 3.931 18 C -0.471 4.471 19 H 0.114 0.886 20 C -0.135 4.135 21 N -0.428 5.428 22 Si 0.730 3.270 23 H -0.195 1.195 24 H -0.215 1.215 25 H -0.166 1.166 26 C -0.102 4.102 27 H 0.087 0.913 28 H 0.098 0.902 29 H 0.082 0.918 30 H 0.160 0.840 31 H 0.156 0.844 32 H 0.143 0.857 33 H 0.149 0.851 34 H 0.142 0.858 35 H 0.256 0.744 36 H 0.128 0.872 37 H 0.120 0.880 38 H 0.123 0.877 39 H 0.096 0.904 40 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges -14.025 -4.419 9.853 17.700 hybrid contribution 0.223 0.132 1.067 1.098 sum -13.801 -4.287 10.920 18.114 Atomic orbital electron populations 1.22279 0.93299 1.03001 1.03690 1.20306 0.96295 0.95959 0.81512 0.87759 1.30817 1.27840 1.10580 1.06647 1.08516 0.78167 0.77057 0.77676 1.30413 1.12668 1.15205 1.23164 1.93652 1.74609 1.74481 1.47857 1.93673 1.80513 1.30886 1.85879 1.55967 1.82260 1.19918 1.30003 1.01871 0.74315 0.73440 0.72341 1.93560 1.82180 1.62330 1.57155 1.93520 1.52856 1.66187 1.83411 1.29858 1.14446 1.09884 1.18796 1.20020 0.97894 0.93382 1.06577 1.20623 0.92971 0.98009 0.98856 1.21275 0.95849 0.98334 1.05771 1.17798 0.93501 0.91418 0.90394 1.19521 0.89588 0.97169 1.40800 0.88580 1.26137 0.94312 1.00563 0.92500 1.69679 1.00459 1.38048 1.34651 0.86413 0.80001 0.81124 0.79438 1.19457 1.21481 1.16585 1.20870 0.90199 0.99959 0.99144 0.91280 0.90187 0.91796 0.83961 0.84436 0.85691 0.85128 0.85778 0.74440 0.87176 0.87980 0.87715 0.90376 0.86006 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.48 9.52 37.16 0.35 -1.13 16 2 C 0.17 1.90 2.77 -67.92 -0.19 1.71 16 3 H 0.10 1.29 7.24 -51.93 -0.38 0.92 16 4 C -0.63 -4.87 5.39 37.16 0.20 -4.67 16 5 S 2.41 29.36 5.28 -107.50 -0.57 28.79 16 6 C -0.67 -5.01 10.62 101.05 1.07 -3.93 16 7 O -0.91 -14.68 17.19 -57.83 -0.99 -15.67 16 8 O -0.91 -15.24 18.10 -57.83 -1.05 -16.29 16 9 N -1.12 -15.41 4.42 -4.89 -0.02 -15.43 16 10 S 2.68 50.22 5.65 -107.50 -0.61 49.61 16 11 O -0.96 -20.44 17.27 -57.17 -0.99 -21.42 16 12 O -0.97 -18.79 16.52 -57.17 -0.94 -19.73 16 13 C -0.64 -14.00 5.81 -39.66 -0.23 -14.23 16 14 C -0.16 -3.35 8.92 -39.29 -0.35 -3.71 16 15 C -0.09 -1.90 10.02 -39.66 -0.40 -2.29 16 16 C -0.19 -4.78 7.18 -38.87 -0.28 -5.06 16 17 C 0.07 1.92 5.11 -106.82 -0.55 1.38 16 18 C -0.44 -12.27 9.57 -37.74 -0.36 -12.63 16 19 H 0.10 2.77 8.06 -52.48 -0.42 2.35 16 20 C 0.08 2.24 5.40 -17.35 -0.09 2.14 16 21 N -0.80 -21.57 13.93 55.55 0.77 -20.80 16 22 Si 0.90 21.00 24.52 -169.99 -4.17 16.83 16 23 H -0.27 -5.98 6.71 56.52 0.38 -5.60 16 24 H -0.29 -6.40 7.11 56.52 0.40 -6.00 16 25 H -0.24 -5.80 6.86 56.52 0.39 -5.41 16 26 C -0.08 -1.99 9.26 -38.87 -0.36 -2.35 16 27 H 0.07 0.47 8.14 -51.93 -0.42 0.05 16 28 H 0.08 0.87 7.64 -51.93 -0.40 0.47 16 29 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 30 H 0.14 0.60 8.14 -51.92 -0.42 0.17 16 31 H 0.14 0.60 8.14 -51.93 -0.42 0.18 16 32 H 0.12 0.62 8.14 -51.92 -0.42 0.19 16 33 H 0.13 1.06 8.14 -51.92 -0.42 0.64 16 34 H 0.12 0.61 8.14 -51.92 -0.42 0.19 16 35 H 0.42 4.68 8.84 -34.47 -0.30 4.37 16 36 H 0.11 2.03 7.59 -52.49 -0.40 1.63 16 37 H 0.10 1.93 8.06 -52.49 -0.42 1.51 16 38 H 0.11 2.54 4.73 -52.49 -0.25 2.29 16 39 H 0.29 6.92 8.30 -40.82 -0.34 6.58 16 40 H 0.12 2.95 7.60 -52.49 -0.40 2.55 16 LS Contribution 358.17 15.07 5.40 5.40 Total: -1.00 -36.89 358.17 -9.44 -46.34 By element: Atomic # 1 Polarization: 12.24 SS G_CDS: -5.10 Total: 7.14 kcal Atomic # 6 Polarization: -43.58 SS G_CDS: -1.18 Total: -44.76 kcal Atomic # 7 Polarization: -36.99 SS G_CDS: 0.75 Total: -36.23 kcal Atomic # 8 Polarization: -69.14 SS G_CDS: -3.97 Total: -73.11 kcal Atomic # 14 Polarization: 21.00 SS G_CDS: -4.17 Total: 16.83 kcal Atomic # 16 Polarization: 79.58 SS G_CDS: -1.17 Total: 78.40 kcal Total LS contribution 5.40 Total: 5.40 kcal Total: -36.89 -9.44 -46.34 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000619493613.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -73.695 kcal (2) G-P(sol) polarization free energy of solvation -36.894 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -110.589 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.443 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.337 kcal (6) G-S(sol) free energy of system = (1) + (5) -120.032 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds