Wall clock time and date at job start Wed Apr 1 2020 04:02:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.08992 * 109.47105 * 2 1 4 4 C 1.52998 * 109.47355 * 120.00906 * 2 1 3 5 5 S 1.81398 * 109.47035 * 185.00013 * 4 2 1 6 6 C 1.81403 * 101.91910 * 179.97438 * 5 4 2 7 7 O 1.42098 * 108.57618 * 294.48323 * 5 4 2 8 8 O 1.42091 * 108.58064 * 65.51234 * 5 4 2 9 9 N 1.46508 * 109.46795 * 240.00737 * 2 1 3 10 10 S 1.65598 * 119.99894 * 94.99910 * 9 2 1 11 11 O 1.42100 * 106.39857 * 178.53831 * 10 9 2 12 12 O 1.42101 * 106.40290 * 311.45580 * 10 9 2 13 13 C 1.76197 * 107.21687 * 65.00003 * 10 9 2 14 14 C 1.38659 * 119.87515 * 269.72114 * 13 10 9 15 15 C 1.38611 * 120.50113 * 179.72214 * 14 13 10 16 16 C 1.37644 * 120.24724 * 0.55889 * 15 14 13 17 17 C 1.40698 * 119.74503 * 359.72057 * 16 15 14 18 18 C 1.41396 * 120.24383 * 180.02562 * 17 16 15 19 19 H 1.08003 * 119.99459 * 150.21842 * 18 17 16 20 20 C 1.39941 * 120.00349 * 330.22486 * 18 17 16 21 21 N 1.30815 * 120.00552 * 161.72350 * 20 18 17 22 22 Si 1.86802 * 119.99695 * 341.72432 * 20 18 17 23 23 H 1.48494 * 109.47289 * 95.41281 * 22 20 18 24 24 H 1.48502 * 109.46961 * 215.41131 * 22 20 18 25 25 H 1.48500 * 109.47139 * 335.41147 * 22 20 18 26 26 C 1.37597 * 119.87691 * 90.00281 * 13 10 9 27 27 H 1.08999 * 109.46619 * 299.99210 * 1 2 3 28 28 H 1.08997 * 109.47005 * 59.99422 * 1 2 3 29 29 H 1.09006 * 109.47179 * 179.97438 * 1 2 3 30 30 H 1.09004 * 109.46961 * 304.99911 * 4 2 1 31 31 H 1.08998 * 109.47165 * 64.99799 * 4 2 1 32 32 H 1.09000 * 109.46889 * 60.00245 * 6 5 4 33 33 H 1.09004 * 109.46998 * 179.97438 * 6 5 4 34 34 H 1.08999 * 109.47356 * 299.99939 * 6 5 4 35 35 H 0.97002 * 120.00005 * 274.99590 * 9 2 1 36 36 H 1.07997 * 119.74672 * 0.02562 * 14 13 10 37 37 H 1.07997 * 119.88031 * 180.25835 * 15 14 13 38 38 H 1.08002 * 120.12644 * 179.74698 * 16 15 14 39 39 H 0.96995 * 120.00755 * 179.97438 * 21 20 18 40 40 H 1.08000 * 120.12881 * 359.96816 * 26 13 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0401 -0.7214 1.2491 5 16 3.8480 -0.5934 1.3254 6 6 4.2235 -1.4982 2.8522 7 8 4.3991 -1.3080 0.2278 8 8 4.1978 0.7712 1.5109 9 7 2.0183 -0.6905 -1.1963 10 16 2.4121 0.1775 -2.5505 11 8 2.8775 -0.7631 -3.5086 12 8 1.3245 1.0595 -2.7921 13 6 3.7927 1.1912 -2.1371 14 6 3.5869 2.4675 -1.6358 15 6 4.6634 3.2738 -1.3009 16 6 5.9509 2.8187 -1.4739 17 6 6.1718 1.5275 -1.9873 18 6 7.4899 1.0491 -2.1688 19 1 7.6965 -0.0080 -2.0888 20 6 8.5268 1.9452 -2.4521 21 7 9.7710 1.5845 -2.2705 22 14 8.1340 3.6566 -3.0895 23 1 8.1057 4.6133 -1.9542 24 1 9.1757 4.0736 -4.0623 25 1 6.8085 3.6435 -3.7588 26 6 5.0710 0.7155 -2.3185 27 1 -0.3632 0.5137 0.8901 28 1 -0.3633 0.5139 -0.8899 29 1 -0.3634 -1.0277 -0.0005 30 1 1.6055 -0.2620 2.1369 31 1 1.7517 -1.7717 1.2053 32 1 3.8709 -2.5257 2.7616 33 1 5.3006 -1.4975 3.0193 34 1 3.7247 -1.0157 3.6926 35 1 2.1110 -1.6561 -1.1952 36 1 2.5801 2.8342 -1.5006 37 1 4.4916 4.2647 -0.9073 38 1 6.7883 3.4502 -1.2162 39 1 10.4897 2.2055 -2.4672 40 1 5.2291 -0.2774 -2.7129 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000619493613.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:02:58 Heat of formation + Delta-G solvation = -152.481991 kcal Electronic energy + Delta-G solvation = -27909.419710 eV Core-core repulsion = 23942.365602 eV Total energy + Delta-G solvation = -3967.054108 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 347.074 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -39.66583 -38.50979 -37.94955 -37.77483 -36.96361 -36.75345 -35.62689 -32.53563 -31.88137 -31.78521 -30.34743 -28.52288 -27.24491 -24.10808 -22.90718 -22.57956 -20.87565 -19.83517 -19.68443 -18.69893 -18.06224 -17.74619 -17.48590 -17.01824 -16.81780 -16.71978 -16.53297 -16.04349 -15.53139 -14.87990 -14.72498 -14.67809 -14.48779 -14.02657 -13.96252 -13.88645 -13.73395 -13.54364 -13.38569 -13.26187 -13.19439 -13.09698 -12.88979 -12.87863 -12.80825 -12.57572 -12.54552 -12.11943 -12.06480 -11.82440 -11.79423 -11.59480 -11.36564 -11.06303 -10.57632 -9.97931 -9.64535 -8.95943 -6.57555 -0.87094 -0.58659 0.19683 0.68698 1.19183 1.34412 1.41770 1.94651 1.99203 2.06886 2.40526 2.67387 2.88711 3.18817 3.32271 3.39355 3.50925 3.89477 4.04915 4.09423 4.18564 4.24948 4.29628 4.33544 4.44316 4.54291 4.71276 4.78465 4.85212 4.94317 5.00027 5.09076 5.17871 5.35633 5.44100 5.45593 5.63755 5.78199 6.01730 6.06977 6.25200 6.61395 6.70611 8.13016 Molecular weight = 347.07amu Principal moments of inertia in cm(-1) A = 0.012630 B = 0.005331 C = 0.004405 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2216.457505 B = 5250.801578 C = 6354.430698 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.145 3.855 3 H 0.090 0.910 4 C -0.599 4.599 5 S 2.365 3.635 6 C -0.643 4.643 7 O -0.973 6.973 8 O -0.978 6.978 9 N -1.109 6.109 10 S 2.710 3.290 11 O -0.993 6.993 12 O -0.971 6.971 13 C -0.648 4.648 14 C -0.140 4.140 15 C -0.093 4.093 16 C -0.202 4.202 17 C 0.052 3.948 18 C -0.486 4.486 19 H 0.056 0.944 20 C 0.049 3.951 21 N -0.843 5.843 22 Si 0.956 3.044 23 H -0.248 1.248 24 H -0.270 1.270 25 H -0.255 1.255 26 C -0.102 4.102 27 H 0.099 0.901 28 H 0.059 0.941 29 H 0.086 0.914 30 H 0.192 0.808 31 H 0.183 0.817 32 H 0.159 0.841 33 H 0.119 0.881 34 H 0.159 0.841 35 H 0.433 0.567 36 H 0.147 0.853 37 H 0.143 0.857 38 H 0.108 0.892 39 H 0.296 0.704 40 H 0.106 0.894 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.601 -4.242 13.689 23.481 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C 0.038 3.962 3 H 0.108 0.892 4 C -0.731 4.731 5 S 2.554 3.446 6 C -0.795 4.795 7 O -0.970 6.970 8 O -0.975 6.975 9 N -0.873 5.873 10 S 2.801 3.199 11 O -0.983 6.983 12 O -0.961 6.961 13 C -0.736 4.736 14 C -0.160 4.160 15 C -0.112 4.112 16 C -0.222 4.222 17 C 0.049 3.951 18 C -0.515 4.515 19 H 0.075 0.925 20 C -0.166 4.166 21 N -0.469 5.469 22 Si 0.778 3.222 23 H -0.173 1.173 24 H -0.196 1.196 25 H -0.179 1.179 26 C -0.123 4.123 27 H 0.118 0.882 28 H 0.078 0.922 29 H 0.105 0.895 30 H 0.210 0.790 31 H 0.200 0.800 32 H 0.177 0.823 33 H 0.138 0.862 34 H 0.178 0.822 35 H 0.272 0.728 36 H 0.165 0.835 37 H 0.161 0.839 38 H 0.125 0.875 39 H 0.107 0.893 40 H 0.124 0.876 Dipole moment (debyes) X Y Z Total from point charges -18.116 -3.686 12.281 22.194 hybrid contribution 1.175 -0.216 0.495 1.293 sum -16.941 -3.902 12.775 21.574 Atomic orbital electron populations 1.22298 0.90697 1.04775 1.04253 1.20772 0.98294 0.95612 0.81531 0.89201 1.30596 1.21978 1.13695 1.06874 1.08981 0.80721 0.76171 0.78766 1.30164 1.12677 1.16439 1.20249 1.93597 1.77207 1.74766 1.51384 1.93596 1.82770 1.34239 1.86945 1.55601 1.81468 1.20382 1.29889 1.01135 0.73089 0.72836 0.72794 1.93517 1.82542 1.62787 1.59463 1.93515 1.51765 1.66751 1.84022 1.30475 1.14886 1.11061 1.17149 1.20612 0.99530 0.92547 1.03302 1.21124 0.91960 0.99957 0.98150 1.21469 0.97433 0.97642 1.05629 1.17957 0.93284 0.92803 0.91081 1.19454 0.91488 0.95765 1.44796 0.92533 1.26797 0.93882 1.03762 0.92182 1.69697 1.01215 1.39733 1.36297 0.85636 0.79431 0.77441 0.79669 1.17317 1.19576 1.17935 1.20789 0.91350 0.99546 1.00626 0.88196 0.92224 0.89487 0.79011 0.79978 0.82278 0.86208 0.82229 0.72822 0.83502 0.83910 0.87466 0.89348 0.87566 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.10 9.52 71.98 0.69 -1.41 16 2 C 0.15 2.75 2.77 44.99 0.12 2.87 16 3 H 0.09 1.97 7.24 -2.39 -0.02 1.96 16 4 C -0.60 -6.29 5.39 71.98 0.39 -5.91 16 5 S 2.37 55.17 5.28 -56.49 -0.30 54.87 16 6 C -0.64 -7.61 10.62 113.37 1.20 -6.40 16 7 O -0.97 -32.78 17.19 -127.37 -2.19 -34.97 16 8 O -0.98 -33.11 18.10 -127.37 -2.30 -35.41 16 9 N -1.11 -28.33 4.42 -169.38 -0.75 -29.08 16 10 S 2.71 99.76 5.65 -56.49 -0.32 99.44 16 11 O -0.99 -43.00 17.27 -128.00 -2.21 -45.21 16 12 O -0.97 -35.70 16.52 -128.00 -2.11 -37.82 16 13 C -0.65 -28.69 5.81 22.22 0.13 -28.56 16 14 C -0.14 -5.73 8.92 22.46 0.20 -5.53 16 15 C -0.09 -4.01 10.02 22.22 0.22 -3.79 16 16 C -0.20 -10.19 7.18 22.73 0.16 -10.03 16 17 C 0.05 2.91 5.11 -21.29 -0.11 2.80 16 18 C -0.49 -29.33 9.57 23.46 0.22 -29.11 16 19 H 0.06 3.69 8.06 -2.91 -0.02 3.66 16 20 C 0.05 2.74 5.40 85.26 0.46 3.20 16 21 N -0.84 -47.89 13.93 21.82 0.30 -47.58 16 22 Si 0.96 44.20 24.52 68.60 1.68 45.88 16 23 H -0.25 -10.58 6.71 99.48 0.67 -9.91 16 24 H -0.27 -11.55 7.11 99.48 0.71 -10.84 16 25 H -0.26 -12.21 6.86 99.48 0.68 -11.52 16 26 C -0.10 -5.34 9.26 22.73 0.21 -5.13 16 27 H 0.10 0.73 8.14 -2.39 -0.02 0.71 16 28 H 0.06 1.06 7.64 -2.39 -0.02 1.04 16 29 H 0.09 0.76 8.14 -2.38 -0.02 0.74 16 30 H 0.19 0.23 8.14 -2.39 -0.02 0.21 16 31 H 0.18 0.38 8.14 -2.39 -0.02 0.36 16 32 H 0.16 0.82 8.14 -2.39 -0.02 0.80 16 33 H 0.12 1.80 8.14 -2.39 -0.02 1.79 16 34 H 0.16 0.77 8.14 -2.39 -0.02 0.76 16 35 H 0.43 8.85 8.84 -96.74 -0.85 8.00 16 36 H 0.15 4.92 7.59 -2.91 -0.02 4.89 16 37 H 0.14 4.93 8.06 -2.91 -0.02 4.90 16 38 H 0.11 5.25 4.73 -2.91 -0.01 5.24 16 39 H 0.30 14.95 8.30 -92.71 -0.77 14.18 16 40 H 0.11 5.69 7.60 -2.91 -0.02 5.67 16 Total: -1.00 -90.10 358.17 -4.14 -94.24 By element: Atomic # 1 Polarization: 22.47 SS G_CDS: 0.16 Total: 22.62 kcal Atomic # 6 Polarization: -90.89 SS G_CDS: 3.90 Total: -86.99 kcal Atomic # 7 Polarization: -76.22 SS G_CDS: -0.44 Total: -76.67 kcal Atomic # 8 Polarization: -144.59 SS G_CDS: -8.82 Total: -153.41 kcal Atomic # 14 Polarization: 44.20 SS G_CDS: 1.68 Total: 45.88 kcal Atomic # 16 Polarization: 154.93 SS G_CDS: -0.62 Total: 154.31 kcal Total: -90.10 -4.14 -94.24 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000619493613.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -58.242 kcal (2) G-P(sol) polarization free energy of solvation -90.101 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -148.343 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.139 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -94.240 kcal (6) G-S(sol) free energy of system = (1) + (5) -152.482 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds