Wall clock time and date at job start Wed Apr 1 2020 04:02:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08997 * 109.46877 * 2 1 4 4 C 1.53001 * 109.47294 * 239.99687 * 2 1 3 5 5 N 1.46498 * 109.46923 * 180.02562 * 4 2 1 6 6 S 1.65610 * 119.99768 * 165.00021 * 5 4 2 7 7 O 1.42099 * 106.39964 * 178.54110 * 6 5 4 8 8 O 1.42098 * 106.40019 * 311.46143 * 6 5 4 9 9 C 1.76202 * 107.21585 * 64.99955 * 6 5 4 10 10 C 1.38631 * 119.75152 * 269.72629 * 9 6 5 11 11 C 1.37620 * 120.24860 * 179.72035 * 10 9 6 12 12 C 1.40717 * 119.74365 * 0.57620 * 11 10 9 13 13 C 1.41393 * 120.24270 * 179.68018 * 12 11 10 14 14 H 1.07997 * 119.99912 * 155.30644 * 13 12 11 15 15 C 1.39944 * 119.99923 * 335.30566 * 13 12 11 16 16 N 1.30818 * 120.00250 * 342.23776 * 15 13 12 17 17 Si 1.86807 * 119.99767 * 162.23329 * 15 13 12 18 18 H 1.48499 * 109.46786 * 94.66599 * 17 15 13 19 19 H 1.48502 * 109.47162 * 214.66555 * 17 15 13 20 20 H 1.48501 * 109.47126 * 334.66484 * 17 15 13 21 21 C 1.40711 * 119.51118 * 359.69656 * 12 11 10 22 22 C 1.37622 * 119.74892 * 0.02562 * 21 12 11 23 23 S 1.81400 * 109.47071 * 119.99891 * 2 1 3 24 24 C 1.81408 * 101.91990 * 305.00374 * 23 2 1 25 25 O 1.42101 * 108.57935 * 59.48438 * 23 2 1 26 26 O 1.42097 * 108.58000 * 190.51325 * 23 2 1 27 27 H 1.08996 * 109.47557 * 299.99824 * 1 2 3 28 28 H 1.09008 * 109.47254 * 179.97438 * 1 2 3 29 29 H 1.09000 * 109.47015 * 60.00375 * 1 2 3 30 30 H 1.08997 * 109.47414 * 299.99984 * 4 2 1 31 31 H 1.09000 * 109.47141 * 60.00015 * 4 2 1 32 32 H 0.96993 * 120.00281 * 344.99764 * 5 4 2 33 33 H 1.07998 * 119.87626 * 359.97438 * 10 9 6 34 34 H 1.08001 * 120.12728 * 180.27587 * 11 10 9 35 35 H 0.97006 * 120.00096 * 180.02562 * 16 15 13 36 36 H 1.08003 * 120.13012 * 179.97438 * 21 12 11 37 37 H 1.07998 * 119.88105 * 179.97438 * 22 21 12 38 38 H 1.08998 * 109.47076 * 59.99692 * 24 23 2 39 39 H 1.09002 * 109.47061 * 180.02562 * 24 23 2 40 40 H 1.08998 * 109.46755 * 299.99534 * 24 23 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0400 -0.7213 -1.2492 5 7 3.5050 -0.7218 -1.2488 6 16 4.3329 -1.7361 -2.2629 7 8 5.7138 -1.4760 -2.0509 8 8 3.7514 -3.0231 -2.1056 9 6 3.9783 -1.2281 -3.9123 10 6 2.8982 -1.7789 -4.5846 11 6 2.6085 -1.3854 -5.8711 12 6 3.4205 -0.4289 -6.5083 13 6 3.1365 -0.0219 -7.8322 14 1 3.4663 0.9450 -8.1824 15 6 2.4280 -0.8721 -8.6888 16 7 2.3291 -2.1465 -8.4108 17 14 1.6234 -0.1869 -10.2292 18 1 2.5409 -0.3572 -11.3844 19 1 0.3563 -0.9155 -10.4918 20 1 1.3334 1.2566 -10.0359 21 6 4.5175 0.1192 -5.8182 22 6 4.7851 -0.2850 -4.5301 23 16 2.1346 -0.8551 1.4811 24 6 1.2996 0.0577 2.8079 25 8 1.6407 -2.1874 1.4681 26 8 3.5341 -0.6350 1.5914 27 1 -0.3634 0.5138 0.8899 28 1 -0.3634 -1.0277 -0.0005 29 1 -0.3633 0.5138 -0.8900 30 1 1.6768 -1.7490 -1.2492 31 1 1.6767 -0.2075 -2.1392 32 1 3.9901 -0.1281 -0.6547 33 1 2.2795 -2.5167 -4.0955 34 1 1.7639 -1.8125 -6.3915 35 1 1.8383 -2.7359 -9.0048 36 1 5.1476 0.8536 -6.2977 37 1 5.6267 0.1340 -3.9986 38 1 0.2201 -0.0209 2.6793 39 1 1.5827 -0.3635 3.7726 40 1 1.5948 1.1062 2.7690 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000704775056.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:02:18 Heat of formation + Delta-G solvation = -134.174867 kcal Electronic energy + Delta-G solvation = -26493.958031 eV Core-core repulsion = 22527.697780 eV Total energy + Delta-G solvation = -3966.260251 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 347.074 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -37.59855 -37.17631 -36.89197 -36.35975 -36.07108 -35.09215 -34.06040 -32.67878 -30.28038 -29.73771 -29.48469 -25.92825 -25.83542 -22.87037 -21.51617 -21.14868 -19.14507 -18.76914 -17.63709 -17.42669 -17.07739 -16.88476 -16.20355 -16.15627 -15.56696 -15.52786 -14.73311 -14.18048 -14.15611 -13.66794 -13.60131 -13.40465 -13.30609 -13.18877 -13.04899 -12.71794 -12.42979 -12.21788 -12.20562 -12.12318 -11.84407 -11.75201 -11.44819 -11.36287 -11.32324 -11.28237 -11.21924 -11.15021 -10.88777 -10.58794 -10.45115 -9.79084 -9.69411 -9.51535 -9.16682 -7.98276 -7.72688 -7.16032 -4.82303 -0.27442 1.22212 2.23540 2.48256 2.85385 2.87296 2.90325 2.93678 3.39856 3.57048 3.64432 3.79600 4.12635 4.20072 4.30615 4.45047 4.54844 4.68701 4.76380 5.06491 5.13888 5.27986 5.30110 5.35684 5.48348 5.59806 5.69395 5.90190 6.08154 6.10816 6.66195 6.69234 6.88646 7.02884 7.21385 7.32433 7.40707 7.61290 7.74651 7.94890 8.29537 8.49051 8.62821 9.75464 Molecular weight = 347.07amu Principal moments of inertia in cm(-1) A = 0.018646 B = 0.002982 C = 0.002767 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1501.322109 B = 9388.984068 C =10118.514354 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.579 4.579 3 H 0.145 0.855 4 C 0.136 3.864 5 N -1.140 6.140 6 S 2.690 3.310 7 O -0.978 6.978 8 O -0.978 6.978 9 C -0.789 4.789 10 C -0.018 4.018 11 C -0.183 4.183 12 C 0.140 3.860 13 C -0.435 4.435 14 H 0.087 0.913 15 C 0.072 3.928 16 N -0.764 5.764 17 Si 0.917 3.083 18 H -0.266 1.266 19 H -0.271 1.271 20 H -0.257 1.257 21 C -0.239 4.239 22 C 0.003 3.997 23 S 2.415 3.585 24 C -0.662 4.662 25 O -0.927 6.927 26 O -0.932 6.932 27 H 0.072 0.928 28 H 0.082 0.918 29 H 0.087 0.913 30 H 0.097 0.903 31 H 0.095 0.905 32 H 0.419 0.581 33 H 0.105 0.895 34 H 0.122 0.878 35 H 0.290 0.710 36 H 0.100 0.900 37 H 0.105 0.895 38 H 0.130 0.870 39 H 0.129 0.871 40 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.121 7.302 14.224 17.933 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.690 4.690 3 H 0.163 0.837 4 C 0.008 3.992 5 N -0.899 5.899 6 S 2.789 3.211 7 O -0.968 6.968 8 O -0.968 6.968 9 C -0.885 4.885 10 C -0.038 4.038 11 C -0.203 4.203 12 C 0.136 3.864 13 C -0.462 4.462 14 H 0.105 0.895 15 C -0.151 4.151 16 N -0.386 5.386 17 Si 0.740 3.260 18 H -0.191 1.191 19 H -0.196 1.196 20 H -0.180 1.180 21 C -0.260 4.260 22 C -0.017 4.017 23 S 2.595 3.405 24 C -0.811 4.811 25 O -0.924 6.924 26 O -0.929 6.929 27 H 0.091 0.909 28 H 0.100 0.900 29 H 0.105 0.895 30 H 0.115 0.885 31 H 0.113 0.887 32 H 0.254 0.746 33 H 0.123 0.877 34 H 0.140 0.860 35 H 0.101 0.899 36 H 0.118 0.882 37 H 0.123 0.877 38 H 0.149 0.851 39 H 0.147 0.853 40 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges -7.191 5.515 14.417 17.028 hybrid contribution -0.949 1.690 -1.099 2.228 sum -8.140 7.205 13.318 17.191 Atomic orbital electron populations 1.21719 0.89199 1.04785 1.04758 1.30321 1.07307 1.13996 1.17350 0.83722 1.21001 0.80072 1.01896 0.96219 1.56148 1.14323 1.61153 1.58293 1.01376 0.72568 0.73047 0.74093 1.93503 1.31231 1.85583 1.86513 1.93506 1.78878 1.37649 1.86774 1.29132 1.14832 1.22357 1.22156 1.20287 0.93503 0.94922 0.95115 1.21340 1.02047 1.03070 0.93874 1.17855 0.87996 0.88433 0.92122 1.19936 1.28067 1.02548 0.95692 0.89457 1.26147 0.94073 0.94235 1.00599 1.69824 1.28727 1.04013 1.36012 0.86147 0.79168 0.80602 0.80119 1.19094 1.19576 1.18030 1.21024 1.00910 1.07789 0.96228 1.20180 0.94605 0.92225 0.94682 1.08307 0.76513 0.77253 0.78452 1.30371 1.15150 1.15751 1.19821 1.93615 1.81828 1.31397 1.85565 1.93587 1.27560 1.86445 1.85285 0.90942 0.89952 0.89456 0.88499 0.88658 0.74620 0.87732 0.85986 0.89901 0.88174 0.87712 0.85148 0.85273 0.85314 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.84 8.90 37.16 0.33 -0.51 16 2 C -0.58 -4.74 2.88 -26.73 -0.08 -4.82 16 3 H 0.14 0.75 8.14 -51.93 -0.42 0.33 16 4 C 0.14 1.70 5.66 -4.04 -0.02 1.68 16 5 N -1.14 -17.67 5.36 -10.61 -0.06 -17.72 16 6 S 2.69 54.54 5.73 -107.50 -0.62 53.93 16 7 O -0.98 -21.93 17.26 -57.17 -0.99 -22.92 16 8 O -0.98 -22.04 16.72 -57.17 -0.96 -23.00 16 9 C -0.79 -17.37 5.97 -39.29 -0.23 -17.61 16 10 C -0.02 -0.41 9.49 -39.66 -0.38 -0.79 16 11 C -0.18 -4.48 8.70 -38.87 -0.34 -4.82 16 12 C 0.14 3.48 5.57 -106.83 -0.60 2.89 16 13 C -0.44 -10.51 9.05 -37.74 -0.34 -10.85 16 14 H 0.09 1.99 7.91 -52.49 -0.41 1.57 16 15 C 0.07 1.64 5.14 -17.34 -0.09 1.55 16 16 N -0.76 -18.12 10.97 55.55 0.61 -17.52 16 17 Si 0.92 16.70 29.59 -169.99 -5.03 11.67 16 18 H -0.27 -4.82 7.11 56.52 0.40 -4.42 16 19 H -0.27 -4.83 7.11 56.52 0.40 -4.43 16 20 H -0.26 -4.62 7.11 56.52 0.40 -4.22 16 21 C -0.24 -5.60 9.80 -38.87 -0.38 -5.98 16 22 C 0.00 0.07 9.49 -39.66 -0.38 -0.30 16 23 S 2.41 24.18 4.69 -107.50 -0.50 23.67 16 24 C -0.66 -3.24 10.01 101.05 1.01 -2.23 16 25 O -0.93 -12.94 18.06 -57.83 -1.04 -13.98 16 26 O -0.93 -12.57 16.43 -57.83 -0.95 -13.52 16 27 H 0.07 0.19 6.39 -51.93 -0.33 -0.14 16 28 H 0.08 0.50 8.14 -51.92 -0.42 0.08 16 29 H 0.09 0.46 8.14 -51.93 -0.42 0.04 16 30 H 0.10 1.27 7.75 -51.93 -0.40 0.87 16 31 H 0.10 1.10 8.14 -51.93 -0.42 0.67 16 32 H 0.42 5.69 7.32 -34.48 -0.25 5.44 16 33 H 0.10 2.19 7.59 -52.49 -0.40 1.79 16 34 H 0.12 3.01 6.18 -52.49 -0.32 2.69 16 35 H 0.29 6.15 8.30 -40.82 -0.34 5.81 16 36 H 0.10 2.16 8.06 -52.48 -0.42 1.74 16 37 H 0.10 2.12 7.60 -52.49 -0.40 1.73 16 38 H 0.13 0.37 6.77 -51.93 -0.35 0.02 16 39 H 0.13 0.57 8.14 -51.92 -0.42 0.15 16 40 H 0.13 0.35 8.14 -51.92 -0.42 -0.07 16 LS Contribution 359.51 15.07 5.42 5.42 Total: -1.00 -35.52 359.51 -10.58 -46.10 By element: Atomic # 1 Polarization: 14.62 SS G_CDS: -4.97 Total: 9.65 kcal Atomic # 6 Polarization: -40.30 SS G_CDS: -1.49 Total: -41.79 kcal Atomic # 7 Polarization: -35.79 SS G_CDS: 0.55 Total: -35.24 kcal Atomic # 8 Polarization: -69.48 SS G_CDS: -3.94 Total: -73.41 kcal Atomic # 14 Polarization: 16.70 SS G_CDS: -5.03 Total: 11.67 kcal Atomic # 16 Polarization: 78.72 SS G_CDS: -1.12 Total: 77.60 kcal Total LS contribution 5.42 Total: 5.42 kcal Total: -35.52 -10.58 -46.10 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000704775056.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -88.074 kcal (2) G-P(sol) polarization free energy of solvation -35.524 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -123.599 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.576 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.100 kcal (6) G-S(sol) free energy of system = (1) + (5) -134.175 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds