Wall clock time and date at job start Wed Apr 1 2020 04:02:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08997 * 109.46877 * 2 1 4 4 C 1.53001 * 109.47294 * 239.99687 * 2 1 3 5 5 N 1.46498 * 109.46923 * 180.02562 * 4 2 1 6 6 S 1.65610 * 119.99768 * 165.00021 * 5 4 2 7 7 O 1.42099 * 106.39964 * 178.54110 * 6 5 4 8 8 O 1.42098 * 106.40019 * 311.46143 * 6 5 4 9 9 C 1.76202 * 107.21585 * 64.99955 * 6 5 4 10 10 C 1.38631 * 119.75152 * 269.72629 * 9 6 5 11 11 C 1.37620 * 120.24860 * 179.72035 * 10 9 6 12 12 C 1.40717 * 119.74365 * 0.57620 * 11 10 9 13 13 C 1.41393 * 120.24270 * 179.68018 * 12 11 10 14 14 H 1.07997 * 119.99912 * 155.30644 * 13 12 11 15 15 C 1.39944 * 119.99923 * 335.30566 * 13 12 11 16 16 N 1.30818 * 120.00250 * 342.23776 * 15 13 12 17 17 Si 1.86807 * 119.99767 * 162.23329 * 15 13 12 18 18 H 1.48499 * 109.46786 * 94.66599 * 17 15 13 19 19 H 1.48502 * 109.47162 * 214.66555 * 17 15 13 20 20 H 1.48501 * 109.47126 * 334.66484 * 17 15 13 21 21 C 1.40711 * 119.51118 * 359.69656 * 12 11 10 22 22 C 1.37622 * 119.74892 * 0.02562 * 21 12 11 23 23 S 1.81400 * 109.47071 * 119.99891 * 2 1 3 24 24 C 1.81408 * 101.91990 * 305.00374 * 23 2 1 25 25 O 1.42101 * 108.57935 * 59.48438 * 23 2 1 26 26 O 1.42097 * 108.58000 * 190.51325 * 23 2 1 27 27 H 1.08996 * 109.47557 * 299.99824 * 1 2 3 28 28 H 1.09008 * 109.47254 * 179.97438 * 1 2 3 29 29 H 1.09000 * 109.47015 * 60.00375 * 1 2 3 30 30 H 1.08997 * 109.47414 * 299.99984 * 4 2 1 31 31 H 1.09000 * 109.47141 * 60.00015 * 4 2 1 32 32 H 0.96993 * 120.00281 * 344.99764 * 5 4 2 33 33 H 1.07998 * 119.87626 * 359.97438 * 10 9 6 34 34 H 1.08001 * 120.12728 * 180.27587 * 11 10 9 35 35 H 0.97006 * 120.00096 * 180.02562 * 16 15 13 36 36 H 1.08003 * 120.13012 * 179.97438 * 21 12 11 37 37 H 1.07998 * 119.88105 * 179.97438 * 22 21 12 38 38 H 1.08998 * 109.47076 * 59.99692 * 24 23 2 39 39 H 1.09002 * 109.47061 * 180.02562 * 24 23 2 40 40 H 1.08998 * 109.46755 * 299.99534 * 24 23 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0400 -0.7213 -1.2492 5 7 3.5050 -0.7218 -1.2488 6 16 4.3329 -1.7361 -2.2629 7 8 5.7138 -1.4760 -2.0509 8 8 3.7514 -3.0231 -2.1056 9 6 3.9783 -1.2281 -3.9123 10 6 2.8982 -1.7789 -4.5846 11 6 2.6085 -1.3854 -5.8711 12 6 3.4205 -0.4289 -6.5083 13 6 3.1365 -0.0219 -7.8322 14 1 3.4663 0.9450 -8.1824 15 6 2.4280 -0.8721 -8.6888 16 7 2.3291 -2.1465 -8.4108 17 14 1.6234 -0.1869 -10.2292 18 1 2.5409 -0.3572 -11.3844 19 1 0.3563 -0.9155 -10.4918 20 1 1.3334 1.2566 -10.0359 21 6 4.5175 0.1192 -5.8182 22 6 4.7851 -0.2850 -4.5301 23 16 2.1346 -0.8551 1.4811 24 6 1.2996 0.0577 2.8079 25 8 1.6407 -2.1874 1.4681 26 8 3.5341 -0.6350 1.5914 27 1 -0.3634 0.5138 0.8899 28 1 -0.3634 -1.0277 -0.0005 29 1 -0.3633 0.5138 -0.8900 30 1 1.6768 -1.7490 -1.2492 31 1 1.6767 -0.2075 -2.1392 32 1 3.9901 -0.1281 -0.6547 33 1 2.2795 -2.5167 -4.0955 34 1 1.7639 -1.8125 -6.3915 35 1 1.8383 -2.7359 -9.0048 36 1 5.1476 0.8536 -6.2977 37 1 5.6267 0.1340 -3.9986 38 1 0.2201 -0.0209 2.6793 39 1 1.5827 -0.3635 3.7726 40 1 1.5948 1.1062 2.7690 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000704775056.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:02:17 Heat of formation + Delta-G solvation = -162.832868 kcal Electronic energy + Delta-G solvation = -26495.200735 eV Core-core repulsion = 22527.697780 eV Total energy + Delta-G solvation = -3967.502955 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 347.074 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -39.40202 -38.29741 -38.02124 -37.67057 -36.93412 -36.85262 -35.82016 -33.55793 -32.08916 -31.30739 -30.22953 -27.63868 -26.74509 -23.70394 -23.26681 -22.95854 -20.51435 -19.74244 -19.42943 -18.72385 -18.32386 -18.09180 -17.48438 -17.21878 -16.96093 -16.55517 -16.02247 -15.83100 -15.35100 -15.04949 -14.96572 -14.33481 -14.19891 -14.08040 -13.98709 -13.89274 -13.78568 -13.53907 -13.35220 -13.17845 -13.10227 -13.08163 -13.00106 -12.97688 -12.87923 -12.70050 -12.56639 -12.24067 -12.03167 -11.88170 -11.56455 -11.44983 -11.23233 -11.18884 -10.49674 -9.81119 -9.56784 -8.88017 -6.66021 -0.95585 -0.40357 0.45701 1.04653 1.36723 1.42500 1.54108 1.83249 2.10893 2.16141 2.51014 2.69733 2.88617 3.08421 3.35983 3.49937 3.56398 3.75420 4.09126 4.14261 4.26344 4.30418 4.30882 4.37448 4.55420 4.69942 4.77378 4.86463 4.90909 4.94558 5.00630 5.09365 5.22488 5.33429 5.51513 5.58007 5.74964 5.91808 6.03692 6.14200 6.47674 6.67152 6.79659 8.07181 Molecular weight = 347.07amu Principal moments of inertia in cm(-1) A = 0.018646 B = 0.002982 C = 0.002767 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1501.322109 B = 9388.984068 C =10118.514354 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.563 4.563 3 H 0.182 0.818 4 C 0.115 3.885 5 N -1.128 6.128 6 S 2.714 3.286 7 O -1.001 7.001 8 O -1.004 7.004 9 C -0.794 4.794 10 C -0.020 4.020 11 C -0.204 4.204 12 C 0.112 3.888 13 C -0.462 4.462 14 H 0.094 0.906 15 C 0.034 3.966 16 N -0.797 5.797 17 Si 0.993 3.007 18 H -0.261 1.261 19 H -0.263 1.263 20 H -0.251 1.251 21 C -0.254 4.254 22 C -0.001 4.001 23 S 2.386 3.614 24 C -0.631 4.631 25 O -0.984 6.984 26 O -0.981 6.981 27 H 0.114 0.886 28 H 0.072 0.928 29 H 0.094 0.906 30 H 0.083 0.917 31 H 0.106 0.894 32 H 0.429 0.571 33 H 0.116 0.884 34 H 0.113 0.887 35 H 0.299 0.701 36 H 0.113 0.887 37 H 0.124 0.876 38 H 0.161 0.839 39 H 0.138 0.862 40 H 0.162 0.838 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.939 9.768 15.075 20.529 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.675 4.675 3 H 0.199 0.801 4 C -0.011 4.011 5 N -0.891 5.891 6 S 2.810 3.190 7 O -0.991 6.991 8 O -0.994 6.994 9 C -0.888 4.888 10 C -0.040 4.040 11 C -0.224 4.224 12 C 0.109 3.891 13 C -0.488 4.488 14 H 0.112 0.888 15 C -0.186 4.186 16 N -0.420 5.420 17 Si 0.812 3.188 18 H -0.186 1.186 19 H -0.187 1.187 20 H -0.175 1.175 21 C -0.275 4.275 22 C -0.021 4.021 23 S 2.574 3.426 24 C -0.785 4.785 25 O -0.981 6.981 26 O -0.978 6.978 27 H 0.132 0.868 28 H 0.091 0.909 29 H 0.113 0.887 30 H 0.101 0.899 31 H 0.124 0.876 32 H 0.267 0.733 33 H 0.134 0.866 34 H 0.131 0.869 35 H 0.110 0.890 36 H 0.131 0.869 37 H 0.142 0.858 38 H 0.179 0.821 39 H 0.157 0.843 40 H 0.180 0.820 Dipole moment (debyes) X Y Z Total from point charges -8.967 7.947 15.243 19.388 hybrid contribution -0.426 0.955 -1.217 1.605 sum -9.393 8.902 14.025 19.084 Atomic orbital electron populations 1.21907 0.86905 1.05068 1.07247 1.30229 1.09024 1.14736 1.13524 0.80066 1.21361 0.78038 1.02308 0.99425 1.55690 1.15827 1.60616 1.57003 1.00540 0.71964 0.72815 0.73633 1.93461 1.33061 1.85938 1.86682 1.93472 1.79260 1.39710 1.86992 1.29415 1.14205 1.21763 1.23446 1.20456 0.93909 0.94935 0.94748 1.21355 1.02392 1.04072 0.94577 1.18207 0.88727 0.89090 0.93106 1.20252 1.29386 1.03252 0.95941 0.88777 1.27063 0.93797 0.94110 1.03639 1.69862 1.29217 1.05338 1.37595 0.85013 0.78163 0.79941 0.75646 1.18576 1.18723 1.17460 1.21249 1.00990 1.08431 0.96796 1.20449 0.95050 0.92095 0.94536 1.08630 0.76194 0.77373 0.80443 1.30101 1.15961 1.16165 1.16239 1.93551 1.82225 1.35509 1.86802 1.93526 1.30918 1.87033 1.86365 0.86776 0.90909 0.88670 0.89861 0.87570 0.73292 0.86612 0.86919 0.88974 0.86900 0.85799 0.82112 0.84343 0.81979 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.25 8.90 71.98 0.64 -0.61 16 2 C -0.56 -7.86 2.88 30.59 0.09 -7.77 16 3 H 0.18 1.15 8.14 -2.39 -0.02 1.13 16 4 C 0.12 2.82 5.66 86.38 0.49 3.31 16 5 N -1.13 -34.74 5.36 -187.50 -1.01 -35.74 16 6 S 2.71 111.60 5.73 -56.49 -0.32 111.27 16 7 O -1.00 -45.30 17.26 -128.00 -2.21 -47.51 16 8 O -1.00 -46.53 16.72 -128.00 -2.14 -48.67 16 9 C -0.79 -35.44 5.97 22.46 0.13 -35.31 16 10 C -0.02 -0.95 9.49 22.22 0.21 -0.74 16 11 C -0.20 -10.29 8.70 22.73 0.20 -10.09 16 12 C 0.11 5.73 5.57 -21.29 -0.12 5.62 16 13 C -0.46 -22.58 9.05 23.46 0.21 -22.37 16 14 H 0.09 4.30 7.91 -2.91 -0.02 4.28 16 15 C 0.03 1.52 5.14 85.26 0.44 1.96 16 16 N -0.80 -38.43 10.97 21.83 0.24 -38.19 16 17 Si 0.99 33.66 29.59 68.60 2.03 35.69 16 18 H -0.26 -8.61 7.11 99.48 0.71 -7.90 16 19 H -0.26 -8.49 7.11 99.48 0.71 -7.79 16 20 H -0.25 -8.23 7.11 99.48 0.71 -7.52 16 21 C -0.25 -12.07 9.80 22.73 0.22 -11.85 16 22 C 0.00 -0.06 9.49 22.22 0.21 0.15 16 23 S 2.39 44.90 4.69 -56.49 -0.27 44.63 16 24 C -0.63 -3.34 10.01 113.37 1.14 -2.20 16 25 O -0.98 -28.07 18.06 -127.37 -2.30 -30.37 16 26 O -0.98 -26.36 16.43 -127.37 -2.09 -28.45 16 27 H 0.11 -0.01 6.39 -2.39 -0.02 -0.03 16 28 H 0.07 0.76 8.14 -2.38 -0.02 0.75 16 29 H 0.09 0.69 8.14 -2.39 -0.02 0.67 16 30 H 0.08 2.27 7.75 -2.39 -0.02 2.25 16 31 H 0.11 2.35 8.14 -2.39 -0.02 2.33 16 32 H 0.43 11.46 7.32 -96.75 -0.71 10.75 16 33 H 0.12 5.00 7.59 -2.91 -0.02 4.98 16 34 H 0.11 5.79 6.18 -2.91 -0.02 5.77 16 35 H 0.30 12.80 8.30 -92.70 -0.77 12.03 16 36 H 0.11 4.90 8.06 -2.91 -0.02 4.88 16 37 H 0.12 4.98 7.60 -2.91 -0.02 4.96 16 38 H 0.16 -0.03 6.77 -2.39 -0.02 -0.05 16 39 H 0.14 0.67 8.14 -2.39 -0.02 0.66 16 40 H 0.16 -0.09 8.14 -2.39 -0.02 -0.11 16 Total: -1.00 -81.35 359.51 -3.84 -85.19 By element: Atomic # 1 Polarization: 31.69 SS G_CDS: 0.37 Total: 32.05 kcal Atomic # 6 Polarization: -83.77 SS G_CDS: 3.86 Total: -79.90 kcal Atomic # 7 Polarization: -73.17 SS G_CDS: -0.77 Total: -73.94 kcal Atomic # 8 Polarization: -146.25 SS G_CDS: -8.74 Total: -154.99 kcal Atomic # 14 Polarization: 33.66 SS G_CDS: 2.03 Total: 35.69 kcal Atomic # 16 Polarization: 156.49 SS G_CDS: -0.59 Total: 155.90 kcal Total: -81.35 -3.84 -85.19 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000704775056.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -77.645 kcal (2) G-P(sol) polarization free energy of solvation -81.350 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -158.995 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.838 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -85.187 kcal (6) G-S(sol) free energy of system = (1) + (5) -162.833 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds