Wall clock time and date at job start Wed Apr 1 2020 04:30:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31408 * 1 3 3 Si 1.86805 * 120.00490 * 2 1 4 4 H 1.48501 * 109.47097 * 240.00155 * 3 2 1 5 5 H 1.48503 * 109.46691 * 359.97438 * 3 2 1 6 6 H 1.48500 * 109.47028 * 119.99901 * 3 2 1 7 7 C 1.38954 * 119.99842 * 179.97438 * 2 1 3 8 8 H 1.08001 * 120.00021 * 179.97438 * 7 2 1 9 9 N 1.37097 * 119.99930 * 0.02562 * 7 2 1 10 10 C 1.34774 * 120.00073 * 179.97438 * 9 7 2 11 11 O 1.21294 * 120.00297 * 359.97438 * 10 9 7 12 12 C 1.50703 * 120.00058 * 179.97438 * 10 9 7 13 13 O 1.45193 * 109.47215 * 179.97438 * 12 10 9 14 14 C 1.34747 * 117.00139 * 179.97438 * 13 12 10 15 15 O 1.21503 * 120.00013 * 0.02562 * 14 13 12 16 16 C 1.47468 * 120.00143 * 179.97438 * 14 13 12 17 17 C 1.39795 * 120.09391 * 180.02562 * 16 14 13 18 18 C 1.37678 * 119.90907 * 180.02562 * 17 16 14 19 19 C 1.39018 * 120.08898 * 359.97438 * 18 17 16 20 20 O 1.35699 * 119.90163 * 180.02562 * 19 18 17 21 21 C 1.42905 * 116.99648 * 179.97438 * 20 19 18 22 22 C 1.52999 * 109.46728 * 180.02562 * 21 20 19 23 23 F 1.39897 * 109.47114 * 60.00534 * 22 21 20 24 24 F 1.39905 * 109.46699 * 180.02562 * 22 21 20 25 25 F 1.39895 * 109.47493 * 299.99920 * 22 21 20 26 26 C 1.39012 * 120.18859 * 0.27642 * 19 18 17 27 27 C 1.37682 * 120.08934 * 359.45234 * 26 19 18 28 28 H 0.97006 * 119.99251 * 0.02562 * 1 2 3 29 29 H 0.97002 * 119.99890 * 359.97438 * 9 7 2 30 30 H 1.09002 * 109.47383 * 59.99542 * 12 10 9 31 31 H 1.08997 * 109.46868 * 300.00014 * 12 10 9 32 32 H 1.08003 * 120.04397 * 0.02562 * 17 16 14 33 33 H 1.08000 * 119.95399 * 179.97438 * 18 17 16 34 34 H 1.09000 * 109.47187 * 300.00274 * 21 20 19 35 35 H 1.09001 * 109.46558 * 60.00321 * 21 20 19 36 36 H 1.08002 * 119.95288 * 179.72348 * 26 19 18 37 37 H 1.08002 * 120.04132 * 180.25288 * 27 26 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2482 1.6177 0.0000 4 1 3.1020 1.6963 -1.2125 5 1 1.2832 2.7465 -0.0006 6 1 3.1020 1.6963 1.2125 7 6 2.0088 -1.2034 0.0005 8 1 3.0888 -1.2034 0.0001 9 7 1.3233 -2.3907 0.0005 10 6 1.9971 -3.5579 0.0005 11 8 3.2100 -3.5580 0.0001 12 6 1.2435 -4.8630 0.0011 13 8 2.1870 -5.9666 0.0004 14 6 1.6719 -7.2118 0.0013 15 8 0.4673 -7.3709 0.0022 16 6 2.5701 -8.3813 0.0001 17 6 2.0379 -9.6740 0.0005 18 6 2.8800 -10.7631 -0.0001 19 6 4.2579 -10.5788 -0.0017 20 8 5.0844 -11.6550 -0.0028 21 6 6.4894 -11.3940 -0.0050 22 6 7.2543 -12.7190 -0.0067 23 9 6.9145 -13.4522 -1.1487 24 9 8.6298 -12.4634 -0.0082 25 9 6.9181 -13.4530 1.1359 26 6 4.7914 -9.2951 0.0031 27 6 3.9563 -8.2005 -0.0019 28 1 -0.4849 0.8402 -0.0004 29 1 0.3533 -2.3906 0.0005 30 1 0.6164 -4.9209 -0.8886 31 1 0.6172 -4.9204 0.8913 32 1 0.9675 -9.8180 0.0013 33 1 2.4696 -11.7621 0.0006 34 1 6.7514 -10.8225 -0.8954 35 1 6.7540 -10.8223 0.8846 36 1 5.8624 -9.1563 0.0064 37 1 4.3716 -7.2035 -0.0022 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000731240368.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:30:37 Heat of formation + Delta-G solvation = -281.467405 kcal Electronic energy + Delta-G solvation = -28432.737394 eV Core-core repulsion = 23340.036497 eV Total energy + Delta-G solvation = -5092.700898 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 347.086 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -50.68518 -48.23860 -48.13591 -40.95343 -40.14668 -38.31406 -37.67922 -36.06836 -34.02748 -32.04849 -31.40933 -31.24067 -30.12877 -28.26981 -25.00953 -24.50383 -23.83555 -22.73553 -20.98685 -19.61676 -19.54046 -19.23011 -18.43156 -18.41373 -18.08436 -17.87966 -16.69802 -16.55198 -16.30155 -15.83617 -15.65996 -15.07250 -14.97298 -14.97031 -14.59340 -14.58700 -14.30276 -14.29671 -14.13236 -14.03710 -13.89791 -13.86621 -13.37829 -13.24087 -12.72676 -12.38795 -12.36432 -12.01711 -11.75116 -11.64169 -11.34533 -11.13347 -10.53891 -10.50976 -10.44574 -10.31147 -9.62028 -9.50371 -8.82396 -8.55539 -8.10901 -6.52164 -3.94371 0.43457 0.93383 1.60286 2.42428 2.42675 2.65135 3.08261 3.13519 3.21247 3.25714 3.31662 3.46594 3.71338 3.72336 4.08927 4.13272 4.26399 4.36783 4.39843 4.54746 4.79679 4.93150 5.03342 5.12865 5.15618 5.46480 5.56046 5.67365 5.70469 5.82503 5.99437 6.07000 6.10518 6.54893 6.61968 7.45257 7.79524 7.92965 8.45789 9.04438 9.36689 9.86347 10.64862 Molecular weight = 347.09amu Principal moments of inertia in cm(-1) A = 0.020609 B = 0.001702 C = 0.001588 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1358.320694 B =16450.837138 C =17624.059763 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.896 5.896 2 C 0.025 3.975 3 Si 0.935 3.065 4 H -0.272 1.272 5 H -0.283 1.283 6 H -0.272 1.272 7 C -0.304 4.304 8 H 0.106 0.894 9 N -0.551 5.551 10 C 0.438 3.562 11 O -0.578 6.578 12 C 0.062 3.938 13 O -0.322 6.322 14 C 0.507 3.493 15 O -0.512 6.512 16 C -0.152 4.152 17 C -0.014 4.014 18 C -0.156 4.156 19 C 0.156 3.844 20 O -0.297 6.297 21 C 0.010 3.990 22 C 0.466 3.534 23 F -0.173 7.173 24 F -0.170 7.170 25 F -0.173 7.173 26 C -0.221 4.221 27 C -0.013 4.013 28 H 0.275 0.725 29 H 0.395 0.605 30 H 0.088 0.912 31 H 0.088 0.912 32 H 0.149 0.851 33 H 0.143 0.857 34 H 0.114 0.886 35 H 0.114 0.886 36 H 0.138 0.862 37 H 0.152 0.848 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.661 -24.810 -0.008 26.625 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.537 5.537 2 C -0.178 4.178 3 Si 0.762 3.238 4 H -0.198 1.198 5 H -0.209 1.209 6 H -0.197 1.197 7 C -0.433 4.433 8 H 0.123 0.877 9 N -0.189 5.189 10 C 0.223 3.777 11 O -0.462 6.462 12 C -0.016 4.016 13 O -0.237 6.237 14 C 0.352 3.648 15 O -0.403 6.403 16 C -0.153 4.153 17 C -0.032 4.032 18 C -0.175 4.175 19 C 0.111 3.889 20 O -0.210 6.210 21 C -0.067 4.067 22 C 0.412 3.588 23 F -0.154 7.154 24 F -0.152 7.152 25 F -0.154 7.154 26 C -0.239 4.239 27 C -0.032 4.032 28 H 0.085 0.915 29 H 0.229 0.771 30 H 0.106 0.894 31 H 0.106 0.894 32 H 0.167 0.833 33 H 0.161 0.839 34 H 0.132 0.868 35 H 0.132 0.868 36 H 0.156 0.844 37 H 0.170 0.830 Dipole moment (debyes) X Y Z Total from point charges 9.952 -24.879 -0.007 26.796 hybrid contribution -0.108 0.862 -0.002 0.869 sum 9.844 -24.017 -0.010 25.956 Atomic orbital electron populations 1.69608 1.05997 1.28618 1.49446 1.25322 0.95699 0.99889 0.96842 0.85851 0.78750 0.80055 0.79183 1.19758 1.20862 1.19750 1.19671 0.93442 0.81751 1.48393 0.87660 1.41696 1.09396 1.04078 1.63693 1.19299 0.88322 0.84051 0.86040 1.90551 1.13408 1.86806 1.55426 1.22769 0.90803 0.84346 1.03645 1.86576 1.40071 1.13897 1.83116 1.21049 0.87092 0.83706 0.72996 1.90828 1.15993 1.86967 1.46495 1.19112 0.93073 0.91351 1.11795 1.21109 1.00866 0.89569 0.91669 1.20327 0.89261 1.00308 1.07596 1.19226 0.90134 0.85210 0.94380 1.85988 1.14668 1.31598 1.88789 1.23901 0.81443 0.93713 1.07632 1.19952 0.77982 0.86509 0.74379 1.93246 1.91922 1.79546 1.50707 1.93247 1.31522 1.94121 1.96285 1.93245 1.92017 1.79506 1.50659 1.21239 1.00997 0.91308 1.10396 1.21468 0.91757 1.00057 0.89876 0.91547 0.77121 0.89417 0.89410 0.83348 0.83877 0.86769 0.86763 0.84431 0.82993 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -23.76 13.05 55.50 0.72 -23.04 16 2 C 0.03 0.65 5.50 -17.47 -0.10 0.56 16 3 Si 0.94 20.43 29.55 -169.99 -5.02 15.41 16 4 H -0.27 -5.91 7.11 56.52 0.40 -5.51 16 5 H -0.28 -6.05 7.11 56.52 0.40 -5.65 16 6 H -0.27 -5.90 7.11 56.52 0.40 -5.50 16 7 C -0.30 -8.25 9.68 -14.93 -0.14 -8.39 16 8 H 0.11 2.98 7.16 -52.49 -0.38 2.60 16 9 N -0.55 -13.72 5.29 -10.96 -0.06 -13.78 16 10 C 0.44 10.33 7.86 -10.98 -0.09 10.25 16 11 O -0.58 -15.61 16.08 -14.12 -0.23 -15.83 16 12 C 0.06 1.15 5.95 36.01 0.21 1.37 16 13 O -0.32 -5.83 9.00 -47.30 -0.43 -6.25 16 14 C 0.51 7.99 7.89 34.49 0.27 8.27 16 15 O -0.51 -8.84 16.13 -19.27 -0.31 -9.15 16 16 C -0.15 -1.88 5.87 -104.98 -0.62 -2.50 16 17 C -0.01 -0.14 9.58 -39.20 -0.38 -0.52 16 18 C -0.16 -1.34 9.97 -39.50 -0.39 -1.74 16 19 C 0.16 1.32 6.70 -39.01 -0.26 1.06 16 20 O -0.30 -2.28 10.01 -18.80 -0.19 -2.47 16 21 C 0.01 0.05 4.69 37.16 0.17 0.22 16 22 C 0.47 2.93 3.32 37.16 0.12 3.05 16 23 F -0.17 -1.34 17.26 2.25 0.04 -1.30 16 24 F -0.17 -1.07 17.32 2.25 0.04 -1.03 16 25 F -0.17 -1.34 17.26 2.25 0.04 -1.30 16 26 C -0.22 -1.84 9.01 -39.50 -0.36 -2.19 16 27 C -0.01 -0.15 9.61 -39.21 -0.38 -0.52 16 28 H 0.27 6.89 8.31 -40.82 -0.34 6.55 16 29 H 0.40 9.32 7.90 -40.82 -0.32 9.00 16 30 H 0.09 1.49 8.14 -51.93 -0.42 1.07 16 31 H 0.09 1.49 8.14 -51.93 -0.42 1.07 16 32 H 0.15 1.39 7.64 -52.48 -0.40 0.99 16 33 H 0.14 0.95 8.06 -52.49 -0.42 0.53 16 34 H 0.11 0.34 7.66 -51.93 -0.40 -0.06 16 35 H 0.11 0.34 7.64 -51.93 -0.40 -0.06 16 36 H 0.14 0.75 6.28 -52.49 -0.33 0.42 16 37 H 0.15 1.74 7.60 -52.49 -0.40 1.34 16 LS Contribution 352.42 15.07 5.31 5.31 Total: -1.00 -32.71 352.42 -5.03 -37.73 By element: Atomic # 1 Polarization: 9.81 SS G_CDS: -3.02 Total: 6.79 kcal Atomic # 6 Polarization: 10.83 SS G_CDS: -1.92 Total: 8.91 kcal Atomic # 7 Polarization: -37.48 SS G_CDS: 0.67 Total: -36.82 kcal Atomic # 8 Polarization: -32.56 SS G_CDS: -1.15 Total: -33.71 kcal Atomic # 9 Polarization: -3.75 SS G_CDS: 0.12 Total: -3.63 kcal Atomic # 14 Polarization: 20.43 SS G_CDS: -5.02 Total: 15.41 kcal Total LS contribution 5.31 Total: 5.31 kcal Total: -32.71 -5.03 -37.73 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000731240368.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -243.734 kcal (2) G-P(sol) polarization free energy of solvation -32.705 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -276.439 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.028 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.734 kcal (6) G-S(sol) free energy of system = (1) + (5) -281.467 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds