Wall clock time and date at job start Wed Apr 1 2020 04:30:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31408 * 1 3 3 Si 1.86805 * 120.00490 * 2 1 4 4 H 1.48501 * 109.47097 * 240.00155 * 3 2 1 5 5 H 1.48503 * 109.46691 * 359.97438 * 3 2 1 6 6 H 1.48500 * 109.47028 * 119.99901 * 3 2 1 7 7 C 1.38954 * 119.99842 * 179.97438 * 2 1 3 8 8 H 1.08001 * 120.00021 * 179.97438 * 7 2 1 9 9 N 1.37097 * 119.99930 * 0.02562 * 7 2 1 10 10 C 1.34774 * 120.00073 * 179.97438 * 9 7 2 11 11 O 1.21294 * 120.00297 * 359.97438 * 10 9 7 12 12 C 1.50703 * 120.00058 * 179.97438 * 10 9 7 13 13 O 1.45193 * 109.47215 * 179.97438 * 12 10 9 14 14 C 1.34747 * 117.00139 * 179.97438 * 13 12 10 15 15 O 1.21503 * 120.00013 * 0.02562 * 14 13 12 16 16 C 1.47468 * 120.00143 * 179.97438 * 14 13 12 17 17 C 1.39795 * 120.09391 * 180.02562 * 16 14 13 18 18 C 1.37678 * 119.90907 * 180.02562 * 17 16 14 19 19 C 1.39018 * 120.08898 * 359.97438 * 18 17 16 20 20 O 1.35699 * 119.90163 * 180.02562 * 19 18 17 21 21 C 1.42905 * 116.99648 * 179.97438 * 20 19 18 22 22 C 1.52999 * 109.46728 * 180.02562 * 21 20 19 23 23 F 1.39897 * 109.47114 * 60.00534 * 22 21 20 24 24 F 1.39905 * 109.46699 * 180.02562 * 22 21 20 25 25 F 1.39895 * 109.47493 * 299.99920 * 22 21 20 26 26 C 1.39012 * 120.18859 * 0.27642 * 19 18 17 27 27 C 1.37682 * 120.08934 * 359.45234 * 26 19 18 28 28 H 0.97006 * 119.99251 * 0.02562 * 1 2 3 29 29 H 0.97002 * 119.99890 * 359.97438 * 9 7 2 30 30 H 1.09002 * 109.47383 * 59.99542 * 12 10 9 31 31 H 1.08997 * 109.46868 * 300.00014 * 12 10 9 32 32 H 1.08003 * 120.04397 * 0.02562 * 17 16 14 33 33 H 1.08000 * 119.95399 * 179.97438 * 18 17 16 34 34 H 1.09000 * 109.47187 * 300.00274 * 21 20 19 35 35 H 1.09001 * 109.46558 * 60.00321 * 21 20 19 36 36 H 1.08002 * 119.95288 * 179.72348 * 26 19 18 37 37 H 1.08002 * 120.04132 * 180.25288 * 27 26 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2482 1.6177 0.0000 4 1 3.1020 1.6963 -1.2125 5 1 1.2832 2.7465 -0.0006 6 1 3.1020 1.6963 1.2125 7 6 2.0088 -1.2034 0.0005 8 1 3.0888 -1.2034 0.0001 9 7 1.3233 -2.3907 0.0005 10 6 1.9971 -3.5579 0.0005 11 8 3.2100 -3.5580 0.0001 12 6 1.2435 -4.8630 0.0011 13 8 2.1870 -5.9666 0.0004 14 6 1.6719 -7.2118 0.0013 15 8 0.4673 -7.3709 0.0022 16 6 2.5701 -8.3813 0.0001 17 6 2.0379 -9.6740 0.0005 18 6 2.8800 -10.7631 -0.0001 19 6 4.2579 -10.5788 -0.0017 20 8 5.0844 -11.6550 -0.0028 21 6 6.4894 -11.3940 -0.0050 22 6 7.2543 -12.7190 -0.0067 23 9 6.9145 -13.4522 -1.1487 24 9 8.6298 -12.4634 -0.0082 25 9 6.9181 -13.4530 1.1359 26 6 4.7914 -9.2951 0.0031 27 6 3.9563 -8.2005 -0.0019 28 1 -0.4849 0.8402 -0.0004 29 1 0.3533 -2.3906 0.0005 30 1 0.6164 -4.9209 -0.8886 31 1 0.6172 -4.9204 0.8913 32 1 0.9675 -9.8180 0.0013 33 1 2.4696 -11.7621 0.0006 34 1 6.7514 -10.8225 -0.8954 35 1 6.7540 -10.8223 0.8846 36 1 5.8624 -9.1563 0.0064 37 1 4.3716 -7.2035 -0.0022 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000731240368.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:30:37 Heat of formation + Delta-G solvation = -301.227604 kcal Electronic energy + Delta-G solvation = -28433.594261 eV Core-core repulsion = 23340.036497 eV Total energy + Delta-G solvation = -5093.557764 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 347.086 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -51.19580 -48.74110 -48.68026 -41.86309 -41.17661 -40.04109 -38.58264 -37.42730 -36.02730 -33.42149 -32.71699 -31.97063 -30.87824 -29.74127 -26.69915 -25.31438 -24.74190 -23.44307 -22.01133 -21.43134 -20.11079 -20.06785 -19.73414 -19.30283 -18.97301 -18.75513 -17.99187 -17.71276 -17.43321 -17.02856 -16.56978 -16.49432 -15.88936 -15.74489 -15.62110 -15.55079 -15.50927 -15.11237 -14.87377 -14.84088 -14.82802 -14.58055 -14.46399 -14.15875 -13.97404 -13.67895 -13.55756 -13.43086 -12.92942 -12.87436 -12.48400 -12.39849 -12.12778 -12.03170 -11.88062 -11.76207 -11.56584 -10.51327 -10.22017 -10.11826 -9.56192 -8.51898 -6.02616 -0.42400 0.21813 1.10421 1.33080 1.36973 1.39206 1.45279 1.56337 1.87242 1.93010 2.30073 2.62504 2.63322 2.89401 3.03595 3.13654 3.24000 3.57539 3.61149 3.74629 3.92631 3.92686 4.03296 4.09038 4.15627 4.21789 4.28394 4.43822 4.87694 4.91598 5.05641 5.21673 5.30699 5.37121 5.39953 5.88919 5.97587 6.45135 6.60342 7.02765 7.39886 7.92917 8.64754 Molecular weight = 347.09amu Principal moments of inertia in cm(-1) A = 0.020609 B = 0.001702 C = 0.001588 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1358.320694 B =16450.837138 C =17624.059763 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.915 5.915 2 C -0.010 4.010 3 Si 0.999 3.001 4 H -0.270 1.270 5 H -0.270 1.270 6 H -0.269 1.269 7 C -0.338 4.338 8 H 0.086 0.914 9 N -0.558 5.558 10 C 0.437 3.563 11 O -0.616 6.616 12 C 0.072 3.928 13 O -0.338 6.338 14 C 0.507 3.493 15 O -0.533 6.533 16 C -0.178 4.178 17 C -0.012 4.012 18 C -0.154 4.154 19 C 0.167 3.833 20 O -0.305 6.305 21 C 0.004 3.996 22 C 0.467 3.533 23 F -0.183 7.183 24 F -0.170 7.170 25 F -0.184 7.184 26 C -0.212 4.212 27 C -0.021 4.021 28 H 0.281 0.719 29 H 0.400 0.600 30 H 0.106 0.894 31 H 0.107 0.893 32 H 0.153 0.847 33 H 0.165 0.835 34 H 0.139 0.861 35 H 0.139 0.861 36 H 0.170 0.830 37 H 0.140 0.860 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.441 -25.642 -0.006 27.687 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.555 5.555 2 C -0.211 4.211 3 Si 0.822 3.178 4 H -0.195 1.195 5 H -0.195 1.195 6 H -0.194 1.194 7 C -0.467 4.467 8 H 0.104 0.896 9 N -0.195 5.195 10 C 0.224 3.776 11 O -0.503 6.503 12 C -0.005 4.005 13 O -0.253 6.253 14 C 0.354 3.646 15 O -0.425 6.425 16 C -0.179 4.179 17 C -0.030 4.030 18 C -0.173 4.173 19 C 0.121 3.879 20 O -0.218 6.218 21 C -0.072 4.072 22 C 0.412 3.588 23 F -0.165 7.165 24 F -0.151 7.151 25 F -0.165 7.165 26 C -0.230 4.230 27 C -0.040 4.040 28 H 0.090 0.910 29 H 0.234 0.766 30 H 0.124 0.876 31 H 0.124 0.876 32 H 0.170 0.830 33 H 0.182 0.818 34 H 0.157 0.843 35 H 0.157 0.843 36 H 0.187 0.813 37 H 0.158 0.842 Dipole moment (debyes) X Y Z Total from point charges 10.716 -25.735 -0.006 27.877 hybrid contribution -0.267 0.950 -0.003 0.986 sum 10.449 -24.785 -0.009 26.898 Atomic orbital electron populations 1.69671 1.06963 1.29779 1.49069 1.26145 0.96601 1.02639 0.95670 0.84905 0.77721 0.76069 0.79149 1.19460 1.19496 1.19448 1.19690 0.92973 0.83326 1.50730 0.89641 1.41738 1.09577 1.04191 1.63991 1.20055 0.88088 0.85294 0.84158 1.90514 1.15321 1.87681 1.56776 1.22533 0.90176 0.82414 1.05411 1.86577 1.40353 1.14689 1.83725 1.21643 0.87483 0.83433 0.72035 1.90803 1.16894 1.86967 1.47842 1.19080 0.93275 0.90653 1.14916 1.21162 1.01393 0.89013 0.91467 1.20546 0.89422 1.00700 1.06582 1.19282 0.90302 0.85424 0.92908 1.85972 1.16044 1.31373 1.88375 1.24210 0.79716 0.93152 1.10118 1.20148 0.78139 0.86816 0.73655 1.93227 1.92015 1.79987 1.51270 1.93248 1.31578 1.94079 1.96238 1.93226 1.92109 1.79949 1.51221 1.21474 1.02304 0.90339 1.08921 1.21423 0.91454 1.00479 0.90595 0.90978 0.76570 0.87562 0.87555 0.82982 0.81783 0.84320 0.84308 0.81266 0.84190 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -48.23 13.05 21.66 0.28 -47.95 16 2 C -0.01 -0.51 5.50 84.93 0.47 -0.04 16 3 Si 1.00 41.53 29.55 68.60 2.03 43.56 16 4 H -0.27 -11.04 7.11 99.48 0.71 -10.33 16 5 H -0.27 -10.61 7.11 99.48 0.71 -9.90 16 6 H -0.27 -11.03 7.11 99.48 0.71 -10.33 16 7 C -0.34 -18.76 9.68 84.04 0.81 -17.94 16 8 H 0.09 5.00 7.16 -2.91 -0.02 4.98 16 9 N -0.56 -28.31 5.29 -306.98 -1.62 -29.94 16 10 C 0.44 21.08 7.86 87.66 0.69 21.77 16 11 O -0.62 -34.27 16.08 15.72 0.25 -34.01 16 12 C 0.07 2.69 5.95 71.24 0.42 3.12 16 13 O -0.34 -12.41 9.00 -50.19 -0.45 -12.86 16 14 C 0.51 16.10 7.89 70.25 0.55 16.65 16 15 O -0.53 -18.42 16.13 19.83 0.32 -18.10 16 16 C -0.18 -4.34 5.87 -20.09 -0.12 -4.46 16 17 C -0.01 -0.23 9.58 22.51 0.22 -0.02 16 18 C -0.15 -2.29 9.97 22.32 0.22 -2.07 16 19 C 0.17 2.35 6.70 22.64 0.15 2.50 16 20 O -0.30 -3.73 10.01 -90.19 -0.90 -4.64 16 21 C 0.00 0.03 4.69 71.98 0.34 0.37 16 22 C 0.47 4.87 3.32 71.98 0.24 5.11 16 23 F -0.18 -2.54 17.26 44.97 0.78 -1.77 16 24 F -0.17 -1.80 17.32 44.97 0.78 -1.02 16 25 F -0.18 -2.54 17.26 44.97 0.78 -1.77 16 26 C -0.21 -2.97 9.01 22.32 0.20 -2.77 16 27 C -0.02 -0.44 9.61 22.51 0.22 -0.23 16 28 H 0.28 13.84 8.31 -92.70 -0.77 13.07 16 29 H 0.40 19.17 7.90 -92.71 -0.73 18.43 16 30 H 0.11 3.58 8.14 -2.39 -0.02 3.56 16 31 H 0.11 3.58 8.14 -2.39 -0.02 3.56 16 32 H 0.15 2.72 7.64 -2.91 -0.02 2.70 16 33 H 0.16 1.72 8.06 -2.91 -0.02 1.70 16 34 H 0.14 0.28 7.66 -2.39 -0.02 0.26 16 35 H 0.14 0.28 7.64 -2.39 -0.02 0.26 16 36 H 0.17 1.19 6.28 -2.91 -0.02 1.17 16 37 H 0.14 3.24 7.60 -2.91 -0.02 3.21 16 Total: -1.00 -71.25 352.42 7.09 -64.16 By element: Atomic # 1 Polarization: 21.91 SS G_CDS: 0.44 Total: 22.34 kcal Atomic # 6 Polarization: 17.57 SS G_CDS: 4.41 Total: 21.98 kcal Atomic # 7 Polarization: -76.55 SS G_CDS: -1.34 Total: -77.89 kcal Atomic # 8 Polarization: -68.82 SS G_CDS: -0.78 Total: -69.60 kcal Atomic # 9 Polarization: -6.88 SS G_CDS: 2.33 Total: -4.55 kcal Atomic # 14 Polarization: 41.53 SS G_CDS: 2.03 Total: 43.56 kcal Total: -71.25 7.09 -64.16 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000731240368.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -237.065 kcal (2) G-P(sol) polarization free energy of solvation -71.249 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -308.314 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.087 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.162 kcal (6) G-S(sol) free energy of system = (1) + (5) -301.228 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds