Wall clock time and date at job start Wed Apr 1 2020 04:37:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31409 * 1 3 3 Si 1.86803 * 119.99902 * 2 1 4 4 H 1.48499 * 109.47224 * 270.00293 * 3 2 1 5 5 H 1.48494 * 109.47010 * 30.00561 * 3 2 1 6 6 H 1.48500 * 109.46848 * 150.00471 * 3 2 1 7 7 C 1.38949 * 120.00078 * 180.02562 * 2 1 3 8 8 H 1.08003 * 119.99998 * 201.64310 * 7 2 1 9 9 N 1.37100 * 119.99996 * 21.63555 * 7 2 1 10 10 C 1.46498 * 120.00018 * 16.52026 * 9 7 2 11 11 C 1.50704 * 109.46943 * 264.06603 * 10 9 7 12 12 O 1.20831 * 119.99791 * 359.97438 * 11 10 9 13 13 O 1.34231 * 120.00033 * 180.02562 * 11 10 9 14 14 C 1.34780 * 119.99642 * 196.51352 * 9 7 2 15 15 O 1.21289 * 120.00499 * 0.02562 * 14 9 7 16 16 C 1.50701 * 119.99357 * 180.02562 * 14 9 7 17 17 O 1.42902 * 109.46842 * 180.02562 * 16 14 9 18 18 C 1.35903 * 116.99805 * 179.97438 * 17 16 14 19 19 C 1.38749 * 120.05813 * 0.02890 * 18 17 16 20 20 C 1.38118 * 119.94608 * 179.97438 * 19 18 17 21 21 C 1.38291 * 120.05342 * 359.73590 * 20 19 18 22 22 C 1.38239 * 120.11156 * 0.51873 * 21 20 19 23 23 C 1.50706 * 119.97265 * 179.76235 * 22 21 20 24 24 F 1.39893 * 109.47198 * 269.71980 * 23 22 21 25 25 F 1.39893 * 109.47075 * 29.72492 * 23 22 21 26 26 F 1.39905 * 109.47083 * 149.72252 * 23 22 21 27 27 C 1.38163 * 120.05860 * 359.48426 * 22 21 20 28 28 H 0.96997 * 119.99914 * 359.97438 * 1 2 3 29 29 H 1.09001 * 109.47252 * 24.06330 * 10 9 7 30 30 H 1.08995 * 109.47306 * 144.06399 * 10 9 7 31 31 H 0.96696 * 116.99478 * 179.97438 * 13 11 10 32 32 H 1.09000 * 109.47382 * 60.00127 * 16 14 9 33 33 H 1.08999 * 109.47395 * 300.00307 * 16 14 9 34 34 H 1.08001 * 120.02601 * 359.94708 * 19 18 17 35 35 H 1.08000 * 119.97569 * 180.02562 * 20 19 18 36 36 H 1.08003 * 119.94491 * 180.27686 * 21 20 19 37 37 H 1.08005 * 120.03450 * 180.23680 * 27 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2481 1.6178 0.0000 4 1 2.4955 2.0465 -1.4000 5 1 1.4456 2.6526 0.7001 6 1 3.5457 1.4401 0.6999 7 6 2.0089 -1.2033 -0.0005 8 1 3.0318 -1.2364 0.3444 9 7 1.3958 -2.3486 -0.4388 10 6 0.1672 -2.2642 -1.2322 11 6 -1.0272 -2.4242 -0.3272 12 8 -0.8683 -2.5920 0.8588 13 8 -2.2674 -2.3812 -0.8388 14 6 1.9236 -3.5522 -0.1398 15 8 2.9406 -3.6221 0.5174 16 6 1.2500 -4.8111 -0.6221 17 8 1.9936 -5.9485 -0.1800 18 6 1.5175 -7.1717 -0.5321 19 6 0.3588 -7.2752 -1.2882 20 6 -0.1227 -8.5195 -1.6452 21 6 0.5521 -9.6615 -1.2544 22 6 1.7040 -9.5613 -0.4966 23 6 2.4340 -10.8081 -0.0678 24 9 1.9424 -11.2336 1.1708 25 9 2.2361 -11.8147 -1.0189 26 9 3.8013 -10.5332 0.0426 27 6 2.1897 -8.3189 -0.1368 28 1 -0.4850 0.8400 0.0004 29 1 0.1204 -1.2944 -1.7275 30 1 0.1636 -3.0555 -1.9818 31 1 -3.0018 -2.4891 -0.2191 32 1 1.2068 -4.8057 -1.7112 33 1 0.2386 -4.8594 -0.2186 34 1 -0.1665 -6.3834 -1.5969 35 1 -1.0244 -8.6006 -2.2341 36 1 0.1765 -10.6335 -1.5383 37 1 3.0918 -8.2410 0.4520 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000739079070.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:37:13 Heat of formation + Delta-G solvation = -265.396604 kcal Electronic energy + Delta-G solvation = -30305.964583 eV Core-core repulsion = 25213.960568 eV Total energy + Delta-G solvation = -5092.004015 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 347.086 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -50.31977 -47.83644 -47.77394 -40.42408 -39.56167 -38.41882 -37.31747 -35.39293 -34.65346 -32.12699 -31.99776 -30.66475 -28.37685 -27.72400 -26.22593 -24.62429 -22.91999 -22.02340 -21.30741 -19.52311 -18.95767 -18.64256 -18.50532 -17.39071 -17.21545 -16.93269 -16.33234 -16.27551 -16.16446 -15.62519 -15.54004 -14.75757 -14.66541 -14.61473 -14.52266 -14.26190 -14.18066 -14.09853 -13.93392 -13.86646 -13.59654 -13.31409 -12.90449 -12.65946 -12.29827 -12.07524 -11.94480 -11.80296 -11.72232 -11.17359 -11.09467 -11.05593 -10.58065 -10.49287 -10.44767 -9.83576 -9.49004 -9.21551 -8.72290 -8.43158 -8.10928 -6.60960 -4.05872 0.69470 1.13365 2.41594 2.94603 3.03983 3.16976 3.23881 3.24418 3.28996 3.43150 3.56166 3.87308 3.96137 4.09078 4.25654 4.51461 4.58197 4.78188 4.82935 4.86785 4.97267 5.18143 5.19433 5.23611 5.45514 5.59395 5.65450 5.86943 6.02813 6.07377 6.22823 6.30966 6.37867 7.25652 7.31095 7.41017 7.78062 8.18759 8.82579 8.90117 9.09677 9.59835 10.48008 Molecular weight = 347.09amu Principal moments of inertia in cm(-1) A = 0.020397 B = 0.002560 C = 0.002362 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1372.443760 B =10934.160705 C =11849.072392 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.880 5.880 2 C 0.031 3.969 3 Si 0.934 3.066 4 H -0.275 1.275 5 H -0.284 1.284 6 H -0.267 1.267 7 C -0.307 4.307 8 H 0.112 0.888 9 N -0.425 5.425 10 C 0.140 3.860 11 C 0.485 3.515 12 O -0.500 6.500 13 O -0.533 6.533 14 C 0.460 3.540 15 O -0.550 6.550 16 C 0.046 3.954 17 O -0.278 6.278 18 C 0.140 3.860 19 C -0.182 4.182 20 C -0.077 4.077 21 C -0.119 4.119 22 C -0.146 4.146 23 C 0.511 3.489 24 F -0.176 7.176 25 F -0.177 7.177 26 F -0.175 7.175 27 C -0.106 4.106 28 H 0.273 0.727 29 H 0.134 0.866 30 H 0.077 0.923 31 H 0.394 0.606 32 H 0.081 0.919 33 H 0.080 0.920 34 H 0.138 0.862 35 H 0.137 0.863 36 H 0.135 0.865 37 H 0.146 0.854 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.599 -15.287 -7.428 17.607 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.519 5.519 2 C -0.172 4.172 3 Si 0.760 3.240 4 H -0.201 1.201 5 H -0.210 1.210 6 H -0.192 1.192 7 C -0.433 4.433 8 H 0.129 0.871 9 N -0.146 5.146 10 C 0.014 3.986 11 C 0.325 3.675 12 O -0.385 6.385 13 O -0.344 6.344 14 C 0.247 3.753 15 O -0.431 6.431 16 C -0.032 4.032 17 O -0.189 6.189 18 C 0.093 3.907 19 C -0.201 4.201 20 C -0.095 4.095 21 C -0.137 4.137 22 C -0.147 4.147 23 C 0.457 3.543 24 F -0.157 7.157 25 F -0.159 7.159 26 F -0.156 7.156 27 C -0.125 4.125 28 H 0.084 0.916 29 H 0.152 0.848 30 H 0.095 0.905 31 H 0.251 0.749 32 H 0.099 0.901 33 H 0.098 0.902 34 H 0.156 0.844 35 H 0.155 0.845 36 H 0.153 0.847 37 H 0.164 0.836 Dipole moment (debyes) X Y Z Total from point charges -3.621 -15.138 -6.881 17.018 hybrid contribution -0.609 0.756 0.483 1.085 sum -4.230 -14.382 -6.397 16.299 Atomic orbital electron populations 1.69783 1.06107 1.28223 1.47819 1.25273 0.95367 1.00124 0.96417 0.85793 0.79542 0.80193 0.78472 1.20104 1.20992 1.19186 1.19775 0.97974 0.82836 1.42752 0.87069 1.43362 1.20361 1.04777 1.46118 1.20773 0.81422 1.05272 0.91171 1.23823 0.83434 0.71182 0.89056 1.90649 1.85825 1.44661 1.17398 1.84513 1.17283 1.86261 1.46378 1.19386 0.88052 0.83286 0.84532 1.90593 1.25729 1.85737 1.41008 1.22728 0.95820 0.85139 0.99562 1.86235 1.50095 1.10945 1.71603 1.18954 0.92318 0.85890 0.93502 1.21596 0.97143 0.99660 1.01679 1.20916 0.99304 0.91005 0.98309 1.20782 0.94397 0.99910 0.98620 1.19639 0.98862 0.91630 1.04598 1.18218 0.77283 0.83805 0.74975 1.93231 1.87585 1.91098 1.43781 1.93181 1.94845 1.63323 1.64511 1.93213 1.32843 1.93655 1.95883 1.20112 1.01529 0.88630 1.02185 0.91642 0.84816 0.90534 0.74915 0.90116 0.90189 0.84387 0.84480 0.84707 0.83646 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -21.86 9.28 55.50 0.52 -21.35 16 2 C 0.03 0.78 4.87 -17.47 -0.09 0.69 16 3 Si 0.93 19.63 29.60 -169.99 -5.03 14.59 16 4 H -0.28 -5.57 7.11 56.52 0.40 -5.17 16 5 H -0.28 -6.00 7.11 56.52 0.40 -5.60 16 6 H -0.27 -5.73 7.11 56.52 0.40 -5.33 16 7 C -0.31 -8.06 9.34 -14.93 -0.14 -8.20 16 8 H 0.11 3.09 7.37 -52.48 -0.39 2.70 16 9 N -0.42 -10.11 2.18 -116.09 -0.25 -10.36 16 10 C 0.14 2.76 4.97 -5.19 -0.03 2.73 16 11 C 0.49 9.83 5.86 36.01 0.21 10.04 16 12 O -0.50 -12.25 16.79 -18.75 -0.31 -12.56 16 13 O -0.53 -8.53 13.42 -39.26 -0.53 -9.06 16 14 C 0.46 10.88 7.49 -10.98 -0.08 10.80 16 15 O -0.55 -15.25 16.14 -14.36 -0.23 -15.48 16 16 C 0.05 0.82 3.83 36.01 0.14 0.96 16 17 O -0.28 -5.10 9.67 -39.34 -0.38 -5.48 16 18 C 0.14 2.05 6.69 -39.21 -0.26 1.79 16 19 C -0.18 -2.13 9.04 -39.44 -0.36 -2.48 16 20 C -0.08 -0.73 10.04 -39.61 -0.40 -1.13 16 21 C -0.12 -1.17 9.40 -39.56 -0.37 -1.54 16 22 C -0.15 -1.70 5.45 -104.65 -0.57 -2.27 16 23 C 0.51 5.75 3.36 36.01 0.12 5.87 16 24 F -0.18 -2.06 17.30 2.25 0.04 -2.02 16 25 F -0.18 -1.87 16.45 2.25 0.04 -1.84 16 26 F -0.17 -2.09 16.46 2.25 0.04 -2.06 16 27 C -0.11 -1.43 9.34 -39.43 -0.37 -1.80 16 28 H 0.27 6.50 8.31 -40.82 -0.34 6.16 16 29 H 0.13 2.74 6.37 -51.93 -0.33 2.41 16 30 H 0.08 1.14 6.69 -51.93 -0.35 0.79 16 31 H 0.39 4.75 9.10 45.56 0.41 5.17 16 32 H 0.08 1.13 6.94 -51.93 -0.36 0.77 16 33 H 0.08 1.34 7.04 -51.93 -0.37 0.98 16 34 H 0.14 1.40 6.30 -52.49 -0.33 1.07 16 35 H 0.14 0.88 8.06 -52.49 -0.42 0.46 16 36 H 0.14 1.03 7.59 -52.48 -0.40 0.63 16 37 H 0.15 1.94 7.60 -52.48 -0.40 1.54 16 LS Contribution 339.67 15.07 5.12 5.12 Total: -1.00 -33.22 339.67 -5.24 -38.46 By element: Atomic # 1 Polarization: 8.64 SS G_CDS: -2.06 Total: 6.58 kcal Atomic # 6 Polarization: 17.64 SS G_CDS: -2.19 Total: 15.45 kcal Atomic # 7 Polarization: -31.97 SS G_CDS: 0.26 Total: -31.71 kcal Atomic # 8 Polarization: -41.13 SS G_CDS: -1.45 Total: -42.58 kcal Atomic # 9 Polarization: -6.03 SS G_CDS: 0.11 Total: -5.91 kcal Atomic # 14 Polarization: 19.63 SS G_CDS: -5.03 Total: 14.59 kcal Total LS contribution 5.12 Total: 5.12 kcal Total: -33.22 -5.24 -38.46 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000739079070.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -226.938 kcal (2) G-P(sol) polarization free energy of solvation -33.216 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -260.154 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.243 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.459 kcal (6) G-S(sol) free energy of system = (1) + (5) -265.397 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds