Wall clock time and date at job start Wed Apr 1 2020 04:22:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31412 * 1 3 3 Si 1.86798 * 120.00127 * 2 1 4 4 H 1.48497 * 109.47160 * 239.99459 * 3 2 1 5 5 H 1.48502 * 109.47300 * 0.02562 * 3 2 1 6 6 H 1.48504 * 109.47251 * 119.99784 * 3 2 1 7 7 C 1.38951 * 119.99731 * 179.97438 * 2 1 3 8 8 H 1.08002 * 120.00185 * 201.63903 * 7 2 1 9 9 N 1.37102 * 119.99897 * 21.65118 * 7 2 1 10 10 C 1.46503 * 119.99948 * 16.50356 * 9 7 2 11 11 C 1.50698 * 109.46900 * 264.06864 * 10 9 7 12 12 O 1.20818 * 120.00317 * 0.02562 * 11 10 9 13 13 O 1.34228 * 119.99687 * 180.02562 * 11 10 9 14 14 C 1.34772 * 119.99642 * 196.50645 * 9 7 2 15 15 O 1.21292 * 120.00408 * 359.97438 * 14 9 7 16 16 C 1.50702 * 119.99756 * 179.97438 * 14 9 7 17 17 C 1.50701 * 109.47429 * 180.02562 * 16 14 9 18 18 C 1.38270 * 119.94187 * 269.72852 * 17 16 14 19 19 C 1.38141 * 120.05206 * 179.72077 * 18 17 16 20 20 C 1.38727 * 119.94609 * 0.57199 * 19 18 17 21 21 O 1.35898 * 120.05712 * 179.68200 * 20 19 18 22 22 C 1.42901 * 117.00002 * 0.02562 * 21 20 19 23 23 F 1.39900 * 109.47182 * 60.00299 * 22 21 20 24 24 F 1.39907 * 109.47321 * 179.97438 * 22 21 20 25 25 F 1.39902 * 109.47130 * 299.99952 * 22 21 20 26 26 C 1.38729 * 119.88859 * 359.69754 * 20 19 18 27 27 C 1.38139 * 119.94468 * 0.02562 * 26 20 19 28 28 H 0.97005 * 120.00183 * 0.02562 * 1 2 3 29 29 H 1.09000 * 109.47067 * 24.06815 * 10 9 7 30 30 H 1.08998 * 109.46643 * 144.06964 * 10 9 7 31 31 H 0.96698 * 117.00220 * 180.02562 * 13 11 10 32 32 H 1.09004 * 109.47293 * 300.00182 * 16 14 9 33 33 H 1.08993 * 109.47458 * 60.00043 * 16 14 9 34 34 H 1.07998 * 119.96933 * 359.97438 * 18 17 16 35 35 H 1.08000 * 120.02390 * 180.25048 * 19 18 17 36 36 H 1.08005 * 120.03131 * 179.97438 * 26 20 19 37 37 H 1.08007 * 119.97675 * 179.97438 * 27 26 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2481 1.6177 0.0000 4 1 3.1020 1.6963 -1.2124 5 1 1.2832 2.7465 0.0006 6 1 3.1019 1.6964 1.2125 7 6 2.0088 -1.2034 0.0005 8 1 3.0317 -1.2363 0.3455 9 7 1.3958 -2.3490 -0.4370 10 6 0.1671 -2.2651 -1.2305 11 6 -1.0272 -2.4244 -0.3254 12 8 -0.8685 -2.5905 0.8607 13 8 -2.2674 -2.3818 -0.8371 14 6 1.9235 -3.5523 -0.1371 15 8 2.9409 -3.6218 0.5195 16 6 1.2493 -4.8116 -0.6176 17 6 2.0335 -6.0108 -0.1506 18 6 3.0403 -6.5287 -0.9443 19 6 3.7644 -7.6244 -0.5159 20 6 3.4729 -8.2123 0.7063 21 8 4.1795 -9.2942 1.1270 22 6 5.2095 -9.7735 0.2601 23 9 6.1553 -8.7629 0.0564 24 9 5.8314 -10.8827 0.8434 25 9 4.6507 -10.1437 -0.9679 26 6 2.4585 -7.6942 1.4982 27 6 1.7411 -6.5949 1.0680 28 1 -0.4851 0.8401 -0.0004 29 1 0.1204 -1.2955 -1.7265 30 1 0.1636 -3.0569 -1.9795 31 1 -3.0019 -2.4884 -0.2173 32 1 0.2381 -4.8593 -0.2134 33 1 1.2054 -4.8074 -1.7066 34 1 3.2635 -6.0737 -1.8980 35 1 4.5535 -8.0260 -1.1344 36 1 2.2293 -8.1504 2.4500 37 1 0.9510 -6.1913 1.6839 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000739079561.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:22:17 Heat of formation + Delta-G solvation = -277.999588 kcal Electronic energy + Delta-G solvation = -30523.229426 eV Core-core repulsion = 25430.678904 eV Total energy + Delta-G solvation = -5092.550522 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 347.086 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -50.57923 -48.31735 -48.15907 -40.29765 -39.52467 -38.47090 -37.44522 -35.30002 -34.55403 -32.26754 -31.56032 -31.03218 -27.94817 -27.48695 -25.84753 -24.46533 -22.94734 -21.96342 -21.16758 -19.73610 -19.28329 -19.21632 -18.93476 -17.25467 -16.97217 -16.74128 -16.34451 -15.87351 -15.59407 -15.32169 -15.26697 -14.94571 -14.70120 -14.61838 -14.52391 -14.51064 -14.39063 -14.25960 -14.09417 -13.84878 -13.70710 -13.24028 -13.13968 -12.69326 -12.14458 -11.88583 -11.77686 -11.56667 -11.40922 -11.40066 -10.96329 -10.90265 -10.52826 -10.44059 -10.33901 -9.71145 -9.10061 -8.96545 -8.70679 -8.22866 -7.97520 -6.50723 -3.94659 1.29069 1.38565 1.40255 2.72266 3.12674 3.20714 3.24420 3.36229 3.56266 3.64581 3.65388 3.90186 4.04265 4.18572 4.67963 4.69630 4.77621 4.96432 5.04394 5.13742 5.42864 5.46962 5.59137 5.69764 5.83665 5.88092 6.07092 6.12109 6.27202 6.37536 6.47593 6.51314 6.74743 7.00110 7.41585 7.49619 7.91789 8.30619 8.94686 9.03135 9.24200 9.77337 10.58132 Molecular weight = 347.09amu Principal moments of inertia in cm(-1) A = 0.018793 B = 0.002655 C = 0.002448 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1489.561140 B =10544.991440 C =11433.044184 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.882 5.882 2 C 0.030 3.970 3 Si 0.929 3.071 4 H -0.273 1.273 5 H -0.285 1.285 6 H -0.273 1.273 7 C -0.306 4.306 8 H 0.108 0.892 9 N -0.432 5.432 10 C 0.144 3.856 11 C 0.488 3.512 12 O -0.503 6.503 13 O -0.534 6.534 14 C 0.463 3.537 15 O -0.566 6.566 16 C -0.102 4.102 17 C -0.057 4.057 18 C -0.067 4.067 19 C -0.187 4.187 20 C 0.088 3.912 21 O -0.312 6.312 22 C 0.603 3.397 23 F -0.164 7.164 24 F -0.136 7.136 25 F -0.167 7.167 26 C -0.120 4.120 27 C -0.069 4.069 28 H 0.272 0.728 29 H 0.129 0.871 30 H 0.078 0.922 31 H 0.392 0.608 32 H 0.090 0.910 33 H 0.091 0.909 34 H 0.131 0.869 35 H 0.130 0.870 36 H 0.135 0.865 37 H 0.136 0.864 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.962 -15.106 -4.870 15.901 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.522 5.522 2 C -0.173 4.173 3 Si 0.756 3.244 4 H -0.198 1.198 5 H -0.210 1.210 6 H -0.198 1.198 7 C -0.433 4.433 8 H 0.125 0.875 9 N -0.152 5.152 10 C 0.017 3.983 11 C 0.328 3.672 12 O -0.389 6.389 13 O -0.346 6.346 14 C 0.252 3.748 15 O -0.448 6.448 16 C -0.142 4.142 17 C -0.057 4.057 18 C -0.085 4.085 19 C -0.206 4.206 20 C 0.046 3.954 21 O -0.232 6.232 22 C 0.512 3.488 23 F -0.146 7.146 24 F -0.118 7.118 25 F -0.149 7.149 26 C -0.138 4.138 27 C -0.087 4.087 28 H 0.082 0.918 29 H 0.147 0.853 30 H 0.096 0.904 31 H 0.249 0.751 32 H 0.108 0.892 33 H 0.109 0.891 34 H 0.149 0.851 35 H 0.147 0.853 36 H 0.153 0.847 37 H 0.154 0.846 Dipole moment (debyes) X Y Z Total from point charges 1.736 -15.088 -4.324 15.791 hybrid contribution -0.107 0.863 0.356 0.940 sum 1.630 -14.224 -3.968 14.857 Atomic orbital electron populations 1.69788 1.06036 1.28043 1.48324 1.25221 0.95301 0.99969 0.96773 0.85939 0.79002 0.80281 0.79192 1.19804 1.21016 1.19811 1.19673 0.97898 0.83352 1.42398 0.87467 1.43444 1.20244 1.05359 1.46163 1.20702 0.81453 1.04879 0.91235 1.23859 0.83332 0.70908 0.89065 1.90617 1.85828 1.44929 1.17483 1.84524 1.17349 1.86312 1.46367 1.19839 0.87483 0.83727 0.83786 1.90566 1.26217 1.86251 1.41812 1.20718 0.99596 0.92033 1.01884 1.19478 0.96422 0.95259 0.94560 1.20778 0.93717 0.94117 0.99913 1.21363 1.03258 1.00080 0.95879 1.18629 0.94289 0.87149 0.95292 1.86380 1.45688 1.46513 1.44650 1.19363 0.78016 0.75913 0.75489 1.93315 1.66109 1.60686 1.94536 1.93289 1.81509 1.52106 1.84862 1.93290 1.85157 1.91696 1.44782 1.20308 0.95408 0.97988 1.00137 1.20906 0.99013 0.93583 0.95207 0.91807 0.85322 0.90399 0.75105 0.89210 0.89096 0.85126 0.85276 0.84686 0.84635 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -22.44 9.28 55.50 0.52 -21.92 16 2 C 0.03 0.76 4.87 -17.47 -0.09 0.67 16 3 Si 0.93 20.07 29.60 -169.99 -5.03 15.03 16 4 H -0.27 -5.74 7.11 56.52 0.40 -5.33 16 5 H -0.28 -6.06 7.11 56.52 0.40 -5.66 16 6 H -0.27 -6.04 7.11 56.52 0.40 -5.64 16 7 C -0.31 -8.16 9.34 -14.93 -0.14 -8.30 16 8 H 0.11 3.02 7.37 -52.49 -0.39 2.63 16 9 N -0.43 -10.35 2.18 -116.09 -0.25 -10.61 16 10 C 0.14 2.92 4.97 -5.19 -0.03 2.90 16 11 C 0.49 10.15 5.86 36.00 0.21 10.36 16 12 O -0.50 -12.42 16.79 -18.74 -0.31 -12.73 16 13 O -0.53 -8.92 13.42 -39.25 -0.53 -9.45 16 14 C 0.46 10.65 7.41 -10.99 -0.08 10.57 16 15 O -0.57 -15.10 15.67 5.55 0.09 -15.01 16 16 C -0.10 -1.74 4.44 -29.03 -0.13 -1.87 16 17 C -0.06 -0.92 4.37 -104.60 -0.46 -1.38 16 18 C -0.07 -1.00 9.69 -39.61 -0.38 -1.38 16 19 C -0.19 -2.64 8.26 -39.44 -0.33 -2.96 16 20 C 0.09 1.25 6.48 -39.22 -0.25 1.00 16 21 O -0.31 -4.08 10.37 -19.42 -0.20 -4.28 16 22 C 0.60 6.88 3.42 101.05 0.35 7.23 16 23 F -0.16 -1.98 15.56 2.25 0.04 -1.94 16 24 F -0.14 -1.43 17.53 2.25 0.04 -1.39 16 25 F -0.17 -1.83 15.56 2.25 0.04 -1.79 16 26 C -0.12 -1.68 9.99 -39.44 -0.39 -2.08 16 27 C -0.07 -1.07 9.69 -39.61 -0.38 -1.45 16 28 H 0.27 6.65 8.31 -40.82 -0.34 6.31 16 29 H 0.13 2.74 6.37 -51.93 -0.33 2.41 16 30 H 0.08 1.23 6.69 -51.93 -0.35 0.88 16 31 H 0.39 4.96 9.10 45.56 0.41 5.37 16 32 H 0.09 1.48 7.46 -51.93 -0.39 1.09 16 33 H 0.09 1.26 7.36 -51.93 -0.38 0.88 16 34 H 0.13 1.70 8.06 -52.49 -0.42 1.27 16 35 H 0.13 1.61 5.10 -52.49 -0.27 1.34 16 36 H 0.14 1.58 8.06 -52.48 -0.42 1.15 16 37 H 0.14 1.99 8.06 -52.48 -0.42 1.56 16 LS Contribution 338.03 15.07 5.09 5.09 Total: -1.00 -32.71 338.03 -4.72 -37.42 By element: Atomic # 1 Polarization: 10.37 SS G_CDS: -2.09 Total: 8.28 kcal Atomic # 6 Polarization: 15.40 SS G_CDS: -2.10 Total: 13.29 kcal Atomic # 7 Polarization: -32.79 SS G_CDS: 0.26 Total: -32.53 kcal Atomic # 8 Polarization: -40.51 SS G_CDS: -0.96 Total: -41.47 kcal Atomic # 9 Polarization: -5.24 SS G_CDS: 0.11 Total: -5.13 kcal Atomic # 14 Polarization: 20.07 SS G_CDS: -5.03 Total: 15.03 kcal Total LS contribution 5.09 Total: 5.09 kcal Total: -32.71 -4.72 -37.42 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000739079561.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -240.575 kcal (2) G-P(sol) polarization free energy of solvation -32.709 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -273.284 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.715 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.424 kcal (6) G-S(sol) free energy of system = (1) + (5) -278.000 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds