Wall clock time and date at job start Wed Apr 1 2020 04:22:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31412 * 1 3 3 Si 1.86798 * 120.00127 * 2 1 4 4 H 1.48497 * 109.47160 * 239.99459 * 3 2 1 5 5 H 1.48502 * 109.47300 * 0.02562 * 3 2 1 6 6 H 1.48504 * 109.47251 * 119.99784 * 3 2 1 7 7 C 1.38951 * 119.99731 * 179.97438 * 2 1 3 8 8 H 1.08002 * 120.00185 * 201.63903 * 7 2 1 9 9 N 1.37102 * 119.99897 * 21.65118 * 7 2 1 10 10 C 1.46503 * 119.99948 * 16.50356 * 9 7 2 11 11 C 1.50698 * 109.46900 * 264.06864 * 10 9 7 12 12 O 1.20818 * 120.00317 * 0.02562 * 11 10 9 13 13 O 1.34228 * 119.99687 * 180.02562 * 11 10 9 14 14 C 1.34772 * 119.99642 * 196.50645 * 9 7 2 15 15 O 1.21292 * 120.00408 * 359.97438 * 14 9 7 16 16 C 1.50702 * 119.99756 * 179.97438 * 14 9 7 17 17 C 1.50701 * 109.47429 * 180.02562 * 16 14 9 18 18 C 1.38270 * 119.94187 * 269.72852 * 17 16 14 19 19 C 1.38141 * 120.05206 * 179.72077 * 18 17 16 20 20 C 1.38727 * 119.94609 * 0.57199 * 19 18 17 21 21 O 1.35898 * 120.05712 * 179.68200 * 20 19 18 22 22 C 1.42901 * 117.00002 * 0.02562 * 21 20 19 23 23 F 1.39900 * 109.47182 * 60.00299 * 22 21 20 24 24 F 1.39907 * 109.47321 * 179.97438 * 22 21 20 25 25 F 1.39902 * 109.47130 * 299.99952 * 22 21 20 26 26 C 1.38729 * 119.88859 * 359.69754 * 20 19 18 27 27 C 1.38139 * 119.94468 * 0.02562 * 26 20 19 28 28 H 0.97005 * 120.00183 * 0.02562 * 1 2 3 29 29 H 1.09000 * 109.47067 * 24.06815 * 10 9 7 30 30 H 1.08998 * 109.46643 * 144.06964 * 10 9 7 31 31 H 0.96698 * 117.00220 * 180.02562 * 13 11 10 32 32 H 1.09004 * 109.47293 * 300.00182 * 16 14 9 33 33 H 1.08993 * 109.47458 * 60.00043 * 16 14 9 34 34 H 1.07998 * 119.96933 * 359.97438 * 18 17 16 35 35 H 1.08000 * 120.02390 * 180.25048 * 19 18 17 36 36 H 1.08005 * 120.03131 * 179.97438 * 26 20 19 37 37 H 1.08007 * 119.97675 * 179.97438 * 27 26 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2481 1.6177 0.0000 4 1 3.1020 1.6963 -1.2124 5 1 1.2832 2.7465 0.0006 6 1 3.1019 1.6964 1.2125 7 6 2.0088 -1.2034 0.0005 8 1 3.0317 -1.2363 0.3455 9 7 1.3958 -2.3490 -0.4370 10 6 0.1671 -2.2651 -1.2305 11 6 -1.0272 -2.4244 -0.3254 12 8 -0.8685 -2.5905 0.8607 13 8 -2.2674 -2.3818 -0.8371 14 6 1.9235 -3.5523 -0.1371 15 8 2.9409 -3.6218 0.5195 16 6 1.2493 -4.8116 -0.6176 17 6 2.0335 -6.0108 -0.1506 18 6 3.0403 -6.5287 -0.9443 19 6 3.7644 -7.6244 -0.5159 20 6 3.4729 -8.2123 0.7063 21 8 4.1795 -9.2942 1.1270 22 6 5.2095 -9.7735 0.2601 23 9 6.1553 -8.7629 0.0564 24 9 5.8314 -10.8827 0.8434 25 9 4.6507 -10.1437 -0.9679 26 6 2.4585 -7.6942 1.4982 27 6 1.7411 -6.5949 1.0680 28 1 -0.4851 0.8401 -0.0004 29 1 0.1204 -1.2955 -1.7265 30 1 0.1636 -3.0569 -1.9795 31 1 -3.0019 -2.4884 -0.2173 32 1 0.2381 -4.8593 -0.2134 33 1 1.2054 -4.8074 -1.7066 34 1 3.2635 -6.0737 -1.8980 35 1 4.5535 -8.0260 -1.1344 36 1 2.2293 -8.1504 2.4500 37 1 0.9510 -6.1913 1.6839 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000739079561.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:22:17 Heat of formation + Delta-G solvation = -299.045322 kcal Electronic energy + Delta-G solvation = -30524.142037 eV Core-core repulsion = 25430.678904 eV Total energy + Delta-G solvation = -5093.463133 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 347.086 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -51.48837 -49.20428 -49.07869 -41.49482 -41.06159 -40.00399 -38.71302 -36.94667 -36.29982 -33.91841 -33.08174 -32.14149 -29.56134 -28.85839 -27.03338 -26.08547 -24.03737 -23.20628 -22.71266 -20.86932 -20.60343 -20.20275 -20.03205 -18.97997 -18.65160 -18.04934 -17.77686 -17.40447 -16.82556 -16.50377 -16.37276 -16.25959 -16.15496 -15.90368 -15.77539 -15.54338 -15.48064 -15.32710 -15.19051 -15.17908 -15.00535 -14.37926 -14.32840 -14.27849 -13.68943 -13.55354 -13.35583 -12.92383 -12.88811 -12.75393 -12.54049 -12.31763 -12.15398 -12.08929 -11.97695 -11.47788 -10.92467 -10.47389 -10.07874 -9.83831 -9.44315 -8.41919 -5.92687 0.13648 0.28010 0.43039 1.39074 1.44163 1.53923 1.73644 1.76864 1.91561 2.26538 2.52327 2.58517 2.73224 2.94207 3.03378 3.18182 3.62160 3.69090 3.75047 4.01715 4.10443 4.26387 4.30349 4.38234 4.58919 4.63185 4.80393 4.94143 4.96437 5.01042 5.14676 5.36131 5.47757 5.57934 5.88578 6.00047 6.05067 6.41745 7.14027 7.33873 7.49851 7.96901 8.64194 Molecular weight = 347.09amu Principal moments of inertia in cm(-1) A = 0.018793 B = 0.002655 C = 0.002448 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1489.561140 B =10544.991440 C =11433.044184 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.892 5.892 2 C 0.002 3.998 3 Si 0.987 3.013 4 H -0.262 1.262 5 H -0.274 1.274 6 H -0.285 1.285 7 C -0.341 4.341 8 H 0.077 0.923 9 N -0.445 5.445 10 C 0.140 3.860 11 C 0.496 3.504 12 O -0.549 6.549 13 O -0.519 6.519 14 C 0.454 3.546 15 O -0.615 6.615 16 C -0.088 4.088 17 C -0.079 4.079 18 C -0.072 4.072 19 C -0.191 4.191 20 C 0.085 3.915 21 O -0.316 6.316 22 C 0.607 3.393 23 F -0.168 7.168 24 F -0.129 7.129 25 F -0.162 7.162 26 C -0.123 4.123 27 C -0.081 4.081 28 H 0.274 0.726 29 H 0.119 0.881 30 H 0.128 0.872 31 H 0.413 0.587 32 H 0.096 0.904 33 H 0.128 0.872 34 H 0.148 0.852 35 H 0.144 0.856 36 H 0.156 0.844 37 H 0.136 0.864 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.360 -15.750 -6.192 16.928 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.531 5.531 2 C -0.200 4.200 3 Si 0.811 3.189 4 H -0.187 1.187 5 H -0.199 1.199 6 H -0.211 1.211 7 C -0.468 4.468 8 H 0.095 0.905 9 N -0.165 5.165 10 C 0.014 3.986 11 C 0.338 3.662 12 O -0.438 6.438 13 O -0.331 6.331 14 C 0.245 3.755 15 O -0.500 6.500 16 C -0.128 4.128 17 C -0.080 4.080 18 C -0.090 4.090 19 C -0.209 4.209 20 C 0.043 3.957 21 O -0.236 6.236 22 C 0.517 3.483 23 F -0.150 7.150 24 F -0.110 7.110 25 F -0.144 7.144 26 C -0.141 4.141 27 C -0.100 4.100 28 H 0.084 0.916 29 H 0.136 0.864 30 H 0.145 0.855 31 H 0.273 0.727 32 H 0.114 0.886 33 H 0.146 0.854 34 H 0.166 0.834 35 H 0.162 0.838 36 H 0.173 0.827 37 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges 1.075 -15.741 -5.687 16.772 hybrid contribution 0.046 0.998 0.784 1.270 sum 1.121 -14.743 -4.903 15.577 Atomic orbital electron populations 1.69869 1.06660 1.28683 1.47854 1.25869 0.96083 1.02113 0.95895 0.85089 0.77955 0.76953 0.78870 1.18671 1.19900 1.21056 1.19554 0.97397 0.85432 1.44460 0.90503 1.43597 1.21362 1.05064 1.46477 1.20896 0.80049 1.06189 0.91459 1.23857 0.84422 0.69637 0.88248 1.90609 1.86664 1.47222 1.19338 1.84452 1.16760 1.85411 1.46454 1.20834 0.86813 0.85116 0.82760 1.90521 1.28406 1.87198 1.43907 1.20632 0.99068 0.89071 1.04006 1.19563 0.97497 0.95499 0.95423 1.21010 0.93197 0.94232 1.00546 1.21568 1.03423 0.99863 0.96055 1.18762 0.94269 0.87326 0.95354 1.86363 1.45952 1.46100 1.45180 1.19266 0.77640 0.75923 0.75484 1.93312 1.66165 1.60947 1.94540 1.93309 1.81292 1.51641 1.84781 1.93301 1.85079 1.91613 1.44408 1.20519 0.95077 0.97581 1.00932 1.21042 0.99497 0.94199 0.95214 0.91614 0.86364 0.85486 0.72703 0.88568 0.85417 0.83419 0.83809 0.82664 0.84652 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -45.02 9.28 21.66 0.20 -44.82 16 2 C 0.00 0.10 4.87 84.93 0.41 0.52 16 3 Si 0.99 41.25 29.60 68.60 2.03 43.28 16 4 H -0.26 -10.44 7.11 99.48 0.71 -9.73 16 5 H -0.27 -10.90 7.11 99.48 0.71 -10.20 16 6 H -0.28 -12.37 7.11 99.48 0.71 -11.66 16 7 C -0.34 -18.63 9.34 84.04 0.79 -17.85 16 8 H 0.08 4.56 7.37 -2.91 -0.02 4.54 16 9 N -0.45 -21.47 2.18 -639.59 -1.39 -22.86 16 10 C 0.14 5.48 4.97 85.63 0.43 5.90 16 11 C 0.50 19.96 5.86 71.24 0.42 20.38 16 12 O -0.55 -27.01 16.79 21.99 0.37 -26.64 16 13 O -0.52 -16.02 13.42 -51.39 -0.69 -16.71 16 14 C 0.45 21.03 7.41 87.66 0.65 21.68 16 15 O -0.61 -33.79 15.67 -3.07 -0.05 -33.84 16 16 C -0.09 -2.89 4.44 29.10 0.13 -2.76 16 17 C -0.08 -2.51 4.37 -19.85 -0.09 -2.60 16 18 C -0.07 -2.04 9.69 22.25 0.22 -1.82 16 19 C -0.19 -5.10 8.26 22.36 0.18 -4.91 16 20 C 0.08 2.31 6.48 22.50 0.15 2.45 16 21 O -0.32 -7.78 10.37 -92.40 -0.96 -8.74 16 22 C 0.61 12.89 3.42 113.37 0.39 13.28 16 23 F -0.17 -3.80 15.56 44.97 0.70 -3.10 16 24 F -0.13 -2.49 17.53 44.97 0.79 -1.70 16 25 F -0.16 -3.24 15.56 44.97 0.70 -2.54 16 26 C -0.12 -3.34 9.99 22.36 0.22 -3.11 16 27 C -0.08 -2.48 9.69 22.25 0.22 -2.26 16 28 H 0.27 13.18 8.31 -92.70 -0.77 12.41 16 29 H 0.12 4.91 6.37 -2.39 -0.02 4.90 16 30 H 0.13 3.62 6.69 -2.39 -0.02 3.60 16 31 H 0.41 9.38 9.10 -74.06 -0.67 8.71 16 32 H 0.10 3.03 7.46 -2.38 -0.02 3.02 16 33 H 0.13 3.15 7.36 -2.39 -0.02 3.13 16 34 H 0.15 3.54 8.06 -2.91 -0.02 3.52 16 35 H 0.14 3.32 5.10 -2.91 -0.01 3.31 16 36 H 0.16 3.44 8.06 -2.91 -0.02 3.41 16 37 H 0.14 4.00 8.06 -2.91 -0.02 3.97 16 Total: -1.00 -72.16 338.03 6.31 -65.85 By element: Atomic # 1 Polarization: 22.42 SS G_CDS: 0.50 Total: 22.93 kcal Atomic # 6 Polarization: 24.78 SS G_CDS: 4.11 Total: 28.89 kcal Atomic # 7 Polarization: -66.48 SS G_CDS: -1.19 Total: -67.68 kcal Atomic # 8 Polarization: -84.60 SS G_CDS: -1.33 Total: -85.93 kcal Atomic # 9 Polarization: -9.53 SS G_CDS: 2.19 Total: -7.35 kcal Atomic # 14 Polarization: 41.25 SS G_CDS: 2.03 Total: 43.28 kcal Total: -72.16 6.31 -65.85 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000739079561.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -233.193 kcal (2) G-P(sol) polarization free energy of solvation -72.162 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -305.356 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.310 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.852 kcal (6) G-S(sol) free energy of system = (1) + (5) -299.045 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds