Wall clock time and date at job start Wed Apr 1 2020 04:37:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31405 * 1 3 3 Si 1.86805 * 119.99875 * 2 1 4 4 H 1.48506 * 109.46818 * 240.00114 * 3 2 1 5 5 H 1.48493 * 109.47240 * 359.97438 * 3 2 1 6 6 H 1.48499 * 109.47098 * 120.00185 * 3 2 1 7 7 C 1.38952 * 120.00494 * 180.02562 * 2 1 3 8 8 H 1.07996 * 120.00554 * 180.02562 * 7 2 1 9 9 N 1.37096 * 119.99678 * 359.97438 * 7 2 1 10 10 C 1.34782 * 120.00128 * 180.02562 * 9 7 2 11 11 O 1.21287 * 119.99567 * 0.02562 * 10 9 7 12 12 C 1.50695 * 119.99828 * 180.02562 * 10 9 7 13 13 O 1.45201 * 109.46856 * 180.02562 * 12 10 9 14 14 C 1.34228 * 117.00111 * 180.02562 * 13 12 10 15 15 O 1.20826 * 119.99864 * 359.97438 * 14 13 12 16 16 C 1.50699 * 119.99979 * 179.97438 * 14 13 12 17 17 C 1.50703 * 109.47010 * 179.97438 * 16 14 13 18 18 C 1.38290 * 119.97179 * 269.97615 * 17 16 14 19 19 C 1.38246 * 120.11140 * 180.02562 * 18 17 16 20 20 C 1.38169 * 120.05594 * 359.67998 * 19 18 17 21 21 C 1.38709 * 119.93896 * 0.61802 * 20 19 18 22 22 O 1.35905 * 120.05570 * 179.67527 * 21 20 19 23 23 C 1.42901 * 116.99604 * 359.72908 * 22 21 20 24 24 F 1.39904 * 109.47113 * 60.00000 * 23 22 21 25 25 F 1.39901 * 109.46966 * 180.02562 * 23 22 21 26 26 F 1.39902 * 109.46987 * 299.99856 * 23 22 21 27 27 C 1.38119 * 119.97324 * 90.00140 * 17 16 14 28 28 H 0.96996 * 120.00236 * 0.02562 * 1 2 3 29 29 H 0.97001 * 120.00519 * 0.02562 * 9 7 2 30 30 H 1.08996 * 109.47810 * 60.00243 * 12 10 9 31 31 H 1.09005 * 109.47374 * 299.99531 * 12 10 9 32 32 H 1.09001 * 109.46971 * 60.00416 * 16 14 13 33 33 H 1.08994 * 109.47418 * 299.99674 * 16 14 13 34 34 H 1.08001 * 119.94690 * 0.02562 * 18 17 16 35 35 H 1.07997 * 119.97049 * 179.97438 * 19 18 17 36 36 H 1.07997 * 120.02760 * 180.29730 * 20 19 18 37 37 H 1.08006 * 120.02943 * 0.02562 * 27 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3140 0.0000 0.0000 3 14 2.2480 1.6178 0.0000 4 1 3.1018 1.6964 -1.2126 5 1 1.2831 2.7465 -0.0006 6 1 3.1018 1.6965 1.2125 7 6 2.0089 -1.2033 -0.0005 8 1 3.0889 -1.2033 -0.0001 9 7 1.3235 -2.3906 -0.0005 10 6 1.9974 -3.5578 -0.0005 11 8 3.2103 -3.5577 -0.0001 12 6 1.2439 -4.8629 -0.0011 13 8 2.1875 -5.9665 -0.0004 14 6 1.6745 -7.2069 -0.0013 15 8 0.4766 -7.3652 -0.0022 16 6 2.5925 -8.4020 -0.0012 17 6 1.7718 -9.6659 -0.0018 18 6 1.3955 -10.2458 1.1960 19 6 0.6431 -11.4055 1.1989 20 6 0.2594 -11.9845 0.0044 21 6 0.6408 -11.4082 -1.1982 22 8 0.2704 -11.9794 -2.3745 23 6 -0.5067 -13.1762 -2.2981 24 9 -1.6993 -12.9150 -1.6149 25 9 -0.7979 -13.6264 -3.5903 26 9 0.2168 -14.1591 -1.6143 27 6 1.3964 -10.2444 -1.1985 28 1 -0.4850 0.8400 -0.0004 29 1 0.3534 -2.3907 -0.0005 30 1 0.6176 -4.9205 -0.8913 31 1 0.6169 -4.9209 0.8887 32 1 3.2207 -8.3775 0.8893 33 1 3.2219 -8.3767 -0.8907 34 1 1.6900 -9.7920 2.1307 35 1 0.3508 -11.8567 2.1355 36 1 -0.3324 -12.8879 0.0072 37 1 1.6912 -9.7916 -2.1337 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000748347866.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:37:21 Heat of formation + Delta-G solvation = -308.803181 kcal Electronic energy + Delta-G solvation = -28867.248171 eV Core-core repulsion = 23773.361906 eV Total energy + Delta-G solvation = -5093.886266 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 347.086 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -51.52202 -49.23825 -49.11278 -41.82558 -41.20009 -40.05083 -38.93608 -37.43177 -36.02405 -33.98341 -33.40682 -31.65778 -30.40698 -28.77701 -27.07217 -26.50838 -23.93702 -23.61063 -22.08482 -21.41202 -20.36212 -20.24043 -20.07386 -19.99418 -18.85614 -18.03752 -17.86161 -17.60867 -17.25174 -17.11327 -16.42054 -16.39137 -16.27365 -15.89347 -15.75606 -15.69999 -15.57477 -15.51693 -15.35289 -15.21964 -15.07536 -14.62368 -14.42221 -14.18046 -14.01163 -13.58242 -13.54079 -13.05761 -13.01713 -12.91519 -12.65515 -12.48297 -12.15761 -12.12643 -11.83892 -11.66772 -11.56264 -10.50821 -10.11642 -10.04266 -9.63052 -8.51825 -6.02574 0.01277 0.21170 0.39457 1.14412 1.38370 1.40270 1.48137 1.57931 1.73702 1.87993 2.29847 2.54583 2.69110 2.91792 3.11385 3.13755 3.41555 3.60060 3.76013 3.89688 3.91986 4.13328 4.16957 4.19252 4.23262 4.25868 4.54941 4.58514 4.85575 4.97147 5.22154 5.28586 5.36297 5.39422 5.42367 5.86309 5.89471 6.46324 6.67432 7.03235 7.40496 7.93776 8.64876 Molecular weight = 347.09amu Principal moments of inertia in cm(-1) A = 0.026022 B = 0.001705 C = 0.001663 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1075.772548 B =16414.362356 C =16837.002209 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.916 5.916 2 C -0.010 4.010 3 Si 0.998 3.002 4 H -0.270 1.270 5 H -0.271 1.271 6 H -0.269 1.269 7 C -0.338 4.338 8 H 0.085 0.915 9 N -0.559 5.559 10 C 0.436 3.564 11 O -0.617 6.617 12 C 0.072 3.928 13 O -0.343 6.343 14 C 0.460 3.540 15 O -0.530 6.530 16 C -0.066 4.066 17 C -0.048 4.048 18 C -0.121 4.121 19 C -0.078 4.078 20 C -0.194 4.194 21 C 0.085 3.915 22 O -0.321 6.321 23 C 0.608 3.392 24 F -0.165 7.165 25 F -0.131 7.131 26 F -0.162 7.162 27 C -0.120 4.120 28 H 0.281 0.719 29 H 0.400 0.600 30 H 0.103 0.897 31 H 0.106 0.894 32 H 0.151 0.849 33 H 0.142 0.858 34 H 0.152 0.848 35 H 0.162 0.838 36 H 0.141 0.859 37 H 0.144 0.856 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.268 -28.115 -0.074 28.143 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.556 5.556 2 C -0.211 4.211 3 Si 0.821 3.179 4 H -0.195 1.195 5 H -0.195 1.195 6 H -0.194 1.194 7 C -0.467 4.467 8 H 0.103 0.897 9 N -0.196 5.196 10 C 0.223 3.777 11 O -0.504 6.504 12 C -0.005 4.005 13 O -0.258 6.258 14 C 0.304 3.696 15 O -0.419 6.419 16 C -0.103 4.103 17 C -0.048 4.048 18 C -0.139 4.139 19 C -0.096 4.096 20 C -0.212 4.212 21 C 0.043 3.957 22 O -0.241 6.241 23 C 0.518 3.482 24 F -0.148 7.148 25 F -0.112 7.112 26 F -0.144 7.144 27 C -0.138 4.138 28 H 0.090 0.910 29 H 0.234 0.766 30 H 0.121 0.879 31 H 0.124 0.876 32 H 0.168 0.832 33 H 0.160 0.840 34 H 0.170 0.830 35 H 0.180 0.820 36 H 0.159 0.841 37 H 0.162 0.838 Dipole moment (debyes) X Y Z Total from point charges -0.970 -27.946 -0.262 27.964 hybrid contribution -0.793 0.621 -0.233 1.034 sum -1.763 -27.326 -0.495 27.387 Atomic orbital electron populations 1.69663 1.06970 1.29783 1.49160 1.26141 0.96594 1.02650 0.95691 0.84908 0.77722 0.76076 0.79166 1.19484 1.19505 1.19408 1.19691 0.92973 0.83374 1.50686 0.89662 1.41759 1.09558 1.04258 1.64065 1.20139 0.88099 0.85414 0.84049 1.90522 1.15410 1.87715 1.56745 1.22473 0.90191 0.82621 1.05198 1.86551 1.40643 1.15039 1.83565 1.24362 0.89057 0.84495 0.71681 1.90683 1.18073 1.86776 1.46409 1.20452 0.95941 0.83848 1.10060 1.19207 0.97930 0.94878 0.92799 1.21456 0.98076 0.96011 0.98318 1.21272 0.95374 0.94739 0.98170 1.21744 1.04429 1.02828 0.92229 1.18773 0.99280 0.95035 0.82614 1.86393 1.67582 1.37699 1.32429 1.19247 0.76160 0.78148 0.74664 1.93308 1.47976 1.93582 1.79887 1.93314 1.92789 1.87871 1.37265 1.93305 1.77819 1.63445 1.79806 1.20431 0.99657 0.93866 0.99842 0.90984 0.76612 0.87875 0.87642 0.83154 0.83980 0.82988 0.82028 0.84116 0.83818 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -48.41 13.05 21.66 0.28 -48.12 16 2 C -0.01 -0.52 5.50 84.93 0.47 -0.06 16 3 Si 1.00 41.66 29.55 68.60 2.03 43.68 16 4 H -0.27 -11.10 7.11 99.48 0.71 -10.39 16 5 H -0.27 -10.65 7.11 99.48 0.71 -9.94 16 6 H -0.27 -11.04 7.11 99.48 0.71 -10.33 16 7 C -0.34 -18.80 9.68 84.04 0.81 -17.99 16 8 H 0.09 5.00 7.16 -2.91 -0.02 4.98 16 9 N -0.56 -28.37 5.29 -306.99 -1.62 -29.99 16 10 C 0.44 20.90 7.86 87.65 0.69 21.59 16 11 O -0.62 -34.38 16.08 15.74 0.25 -34.13 16 12 C 0.07 2.64 5.94 71.23 0.42 3.06 16 13 O -0.34 -11.67 9.75 -45.04 -0.44 -12.11 16 14 C 0.46 12.48 7.95 71.24 0.57 13.05 16 15 O -0.53 -16.94 15.78 21.96 0.35 -16.60 16 16 C -0.07 -1.11 5.94 29.10 0.17 -0.93 16 17 C -0.05 -0.85 4.37 -19.88 -0.09 -0.94 16 18 C -0.12 -1.85 9.70 22.28 0.22 -1.63 16 19 C -0.08 -1.10 10.04 22.26 0.22 -0.88 16 20 C -0.19 -3.27 8.26 22.37 0.18 -3.09 16 21 C 0.08 1.68 6.48 22.51 0.15 1.82 16 22 O -0.32 -6.35 10.37 -92.48 -0.96 -7.31 16 23 C 0.61 10.06 3.42 113.37 0.39 10.45 16 24 F -0.17 -2.80 15.55 44.97 0.70 -2.10 16 25 F -0.13 -2.12 17.53 44.97 0.79 -1.33 16 26 F -0.16 -2.45 15.58 44.97 0.70 -1.75 16 27 C -0.12 -2.32 9.64 22.37 0.22 -2.10 16 28 H 0.28 13.87 8.31 -92.71 -0.77 13.10 16 29 H 0.40 19.15 7.90 -92.71 -0.73 18.42 16 30 H 0.10 3.41 8.13 -2.39 -0.02 3.39 16 31 H 0.11 3.44 8.13 -2.38 -0.02 3.42 16 32 H 0.15 1.70 8.08 -2.39 -0.02 1.68 16 33 H 0.14 1.80 8.08 -2.39 -0.02 1.78 16 34 H 0.15 1.67 8.06 -2.91 -0.02 1.65 16 35 H 0.16 1.33 8.06 -2.91 -0.02 1.31 16 36 H 0.14 2.04 5.10 -2.91 -0.01 2.03 16 37 H 0.14 2.50 8.06 -2.91 -0.02 2.48 16 Total: -1.00 -70.75 349.72 6.93 -63.81 By element: Atomic # 1 Polarization: 23.14 SS G_CDS: 0.43 Total: 23.58 kcal Atomic # 6 Polarization: 17.95 SS G_CDS: 4.42 Total: 22.37 kcal Atomic # 7 Polarization: -76.78 SS G_CDS: -1.34 Total: -78.12 kcal Atomic # 8 Polarization: -69.35 SS G_CDS: -0.80 Total: -70.15 kcal Atomic # 9 Polarization: -7.36 SS G_CDS: 2.19 Total: -5.17 kcal Atomic # 14 Polarization: 41.66 SS G_CDS: 2.03 Total: 43.68 kcal Total: -70.75 6.93 -63.81 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000748347866.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -244.988 kcal (2) G-P(sol) polarization free energy of solvation -70.745 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -315.734 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.930 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.815 kcal (6) G-S(sol) free energy of system = (1) + (5) -308.803 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds