Wall clock time and date at job start Wed Apr 1 2020 04:16:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31291 * 1 3 3 Si 1.86804 * 119.99717 * 2 1 4 4 H 1.48499 * 109.46889 * 239.99469 * 3 2 1 5 5 H 1.48499 * 109.47416 * 0.02562 * 3 2 1 6 6 H 1.48508 * 109.47118 * 119.99729 * 3 2 1 7 7 C 1.38984 * 120.00266 * 179.97438 * 2 1 3 8 8 H 1.08003 * 120.00056 * 180.02562 * 7 2 1 9 9 N 1.37323 * 119.99725 * 0.02562 * 7 2 1 10 10 C 1.36495 * 126.06816 * 179.97438 * 9 7 2 11 11 C 1.35678 * 107.51092 * 180.02562 * 10 9 7 12 12 N 1.40588 * 126.08563 * 179.97438 * 11 10 9 13 13 C 1.34773 * 120.00370 * 180.02562 * 12 11 10 14 14 O 1.21306 * 120.00047 * 359.97438 * 13 12 11 15 15 C 1.50702 * 120.00322 * 180.02562 * 13 12 11 16 16 C 1.50701 * 109.47164 * 179.97438 * 15 13 12 17 17 C 1.37974 * 119.87222 * 264.99979 * 16 15 13 18 18 C 1.38343 * 120.33734 * 180.02562 * 17 16 15 19 19 Cl 1.73603 * 120.12935 * 180.22677 * 18 17 16 20 20 C 1.38490 * 119.73763 * 0.19829 * 18 17 16 21 21 C 1.37696 * 119.97225 * 359.93148 * 20 18 17 22 22 C 1.38926 * 120.79130 * 359.43978 * 21 20 18 23 23 O 1.36154 * 111.21638 * 180.88287 * 22 21 20 24 24 C 1.43777 * 109.29319 * 341.20689 * 23 22 21 25 25 C 1.51648 * 132.16657 * 179.46143 * 21 20 18 26 26 C 1.40653 * 107.83340 * 359.97438 * 11 10 9 27 27 N 1.30910 * 108.38789 * 0.02562 * 26 11 10 28 28 H 0.97003 * 119.99973 * 0.02562 * 1 2 3 29 29 H 1.07999 * 126.24260 * 359.75876 * 10 9 7 30 30 H 0.97001 * 119.99793 * 359.97438 * 12 11 10 31 31 H 1.09000 * 109.46804 * 299.99604 * 15 13 12 32 32 H 1.09003 * 109.47026 * 59.99515 * 15 13 12 33 33 H 1.08000 * 119.82850 * 359.97438 * 17 16 15 34 34 H 1.08004 * 120.01127 * 179.91565 * 20 18 17 35 35 H 1.09004 * 110.74719 * 269.27528 * 24 23 22 36 36 H 1.09006 * 110.90352 * 145.99962 * 24 23 22 37 37 H 1.09001 * 110.93426 * 313.62757 * 25 21 20 38 38 H 1.08994 * 110.93469 * 77.27192 * 25 21 20 39 39 H 1.07996 * 125.80538 * 180.02562 * 26 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3129 0.0000 0.0000 3 14 2.2469 1.6178 0.0000 4 1 3.1007 1.6964 -1.2124 5 1 1.2819 2.7465 0.0006 6 1 3.1006 1.6966 1.2126 7 6 2.0079 -1.2036 0.0005 8 1 3.0879 -1.2036 0.0010 9 7 1.3213 -2.3929 0.0005 10 6 1.8750 -3.6405 0.0005 11 6 0.8579 -4.5385 0.0000 12 7 0.9891 -5.9382 -0.0007 13 6 -0.1100 -6.7182 -0.0018 14 8 -1.2126 -6.2125 -0.0017 15 6 0.0308 -8.2186 -0.0020 16 6 -1.3370 -8.8514 -0.0026 17 6 -1.9173 -9.2348 1.1890 18 6 -3.1722 -9.8171 1.1996 19 17 -3.8998 -10.2921 2.7025 20 6 -3.8459 -10.0190 0.0066 21 6 -3.2665 -9.6392 -1.1834 22 6 -2.0124 -9.0418 -1.2051 23 8 -1.6371 -8.7300 -2.4762 24 6 -2.4260 -9.4928 -3.4051 25 6 -3.7376 -9.7359 -2.6216 26 6 -0.3512 -3.8199 0.0002 27 7 -0.0715 -2.5410 0.0003 28 1 -0.4850 0.8401 -0.0004 29 1 2.9301 -3.8707 -0.0031 30 1 1.8708 -6.3426 -0.0012 31 1 0.5769 -8.5321 -0.8916 32 1 0.5756 -8.5325 0.8884 33 1 -1.3888 -9.0803 2.1181 34 1 -4.8252 -10.4745 0.0096 35 1 -1.9370 -10.4377 -3.6421 36 1 -2.6187 -8.9210 -4.3129 37 1 -4.1401 -10.7264 -2.8338 38 1 -4.4733 -8.9629 -2.8432 39 1 -1.3418 -4.2500 0.0003 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000754380696.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:16:56 Heat of formation + Delta-G solvation = 38.739272 kcal Electronic energy + Delta-G solvation = -26749.561367 eV Core-core repulsion = 22685.604329 eV Total energy + Delta-G solvation = -4063.957038 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 347.082 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -41.37502 -39.82406 -38.63756 -37.81480 -36.31089 -34.17767 -33.64681 -33.08342 -31.23113 -30.17585 -29.48248 -28.37948 -26.99321 -24.73402 -23.63776 -22.37462 -21.76432 -20.86168 -19.99206 -19.33666 -17.61896 -17.46500 -17.05693 -16.62373 -16.14689 -16.05346 -15.40040 -15.18204 -14.89467 -14.18585 -14.06289 -13.81519 -13.55760 -13.39121 -13.18672 -13.11052 -12.99654 -12.81025 -12.51350 -12.04796 -11.92737 -11.80641 -11.64045 -11.40527 -11.35638 -11.20249 -10.92068 -10.89457 -10.62040 -10.53391 -10.07628 -9.24587 -9.11118 -8.90501 -8.74207 -8.15515 -8.00404 -6.63706 -6.51319 -4.18154 1.00903 1.03405 1.99760 2.90226 3.06510 3.07585 3.09908 3.11014 3.28491 3.73036 3.75811 3.96846 4.12882 4.31387 4.47934 4.51887 4.71392 4.79506 4.83465 4.93378 5.06210 5.13614 5.19070 5.24331 5.36835 5.38675 5.48464 5.50401 5.78280 5.89764 6.01119 6.12866 6.29175 6.30126 6.52067 6.92046 6.96390 7.02213 7.19378 7.30411 7.90634 8.25195 8.35103 8.69333 8.94527 9.43201 9.72760 10.44701 Molecular weight = 347.08amu Principal moments of inertia in cm(-1) A = 0.016608 B = 0.002321 C = 0.002199 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1685.556629 B =12061.149531 C =12730.032773 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.771 5.771 2 C 0.046 3.954 3 Si 0.934 3.066 4 H -0.267 1.267 5 H -0.277 1.277 6 H -0.267 1.267 7 C -0.324 4.324 8 H 0.115 0.885 9 N -0.144 5.144 10 C -0.085 4.085 11 C -0.057 4.057 12 N -0.627 5.627 13 C 0.501 3.499 14 O -0.527 6.527 15 C -0.095 4.095 16 C -0.066 4.066 17 C -0.061 4.061 18 C -0.063 4.063 19 Cl -0.070 7.070 20 C -0.062 4.062 21 C -0.167 4.167 22 C 0.133 3.867 23 O -0.293 6.293 24 C 0.050 3.950 25 C -0.107 4.107 26 C -0.034 4.034 27 N -0.261 5.261 28 H 0.275 0.725 29 H 0.145 0.855 30 H 0.396 0.604 31 H 0.103 0.897 32 H 0.102 0.898 33 H 0.141 0.859 34 H 0.133 0.867 35 H 0.078 0.922 36 H 0.108 0.892 37 H 0.092 0.908 38 H 0.094 0.906 39 H 0.175 0.825 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.813 -22.398 -2.545 22.716 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.398 5.398 2 C -0.171 4.171 3 Si 0.758 3.242 4 H -0.192 1.192 5 H -0.202 1.202 6 H -0.192 1.192 7 C -0.456 4.456 8 H 0.133 0.867 9 N 0.088 4.912 10 C -0.236 4.236 11 C -0.162 4.162 12 N -0.269 5.269 13 C 0.287 3.713 14 O -0.403 6.403 15 C -0.135 4.135 16 C -0.067 4.067 17 C -0.080 4.080 18 C -0.090 4.090 19 Cl -0.041 7.041 20 C -0.081 4.081 21 C -0.168 4.168 22 C 0.087 3.913 23 O -0.206 6.206 24 C -0.025 4.025 25 C -0.144 4.144 26 C -0.209 4.209 27 N -0.092 5.092 28 H 0.085 0.915 29 H 0.162 0.838 30 H 0.229 0.771 31 H 0.121 0.879 32 H 0.121 0.879 33 H 0.159 0.841 34 H 0.151 0.849 35 H 0.096 0.904 36 H 0.126 0.874 37 H 0.111 0.889 38 H 0.112 0.888 39 H 0.192 0.808 Dipole moment (debyes) X Y Z Total from point charges -4.191 -20.572 -2.510 21.144 hybrid contribution 1.057 -0.448 0.087 1.151 sum -3.135 -21.020 -2.422 21.390 Atomic orbital electron populations 1.70212 1.06108 1.27999 1.35434 1.25630 0.95691 1.00216 0.95556 0.85911 0.79138 0.79736 0.79428 1.19195 1.20166 1.19191 1.19802 0.91594 0.80603 1.53607 0.86735 1.44529 1.04038 1.03267 1.39341 1.21255 0.96801 0.85420 1.20124 1.17273 0.94229 0.81373 1.23364 1.42492 1.08133 1.04495 1.71806 1.20154 0.84654 0.88063 0.78479 1.90619 1.25772 1.74774 1.49161 1.20530 0.94855 0.92905 1.05191 1.18394 0.96277 1.02529 0.89507 1.20606 0.93484 0.96374 0.97515 1.20485 0.95469 1.05993 0.87005 1.98358 1.82986 1.90810 1.31984 1.20019 0.99672 0.99282 0.89080 1.20584 0.95390 1.05440 0.95414 1.19326 0.92129 0.93929 0.85877 1.86921 1.60244 1.60855 1.12564 1.23872 0.89407 0.96361 0.92868 1.21793 0.98626 1.03975 0.90013 1.24102 0.98062 0.90721 1.08024 1.78246 0.90116 1.15121 1.25698 0.91469 0.83765 0.77099 0.87887 0.87933 0.84118 0.84889 0.90414 0.87372 0.88921 0.88754 0.80823 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.77 -21.94 11.81 55.49 0.66 -21.29 16 2 C 0.05 1.21 5.50 -17.51 -0.10 1.11 16 3 Si 0.93 19.19 29.55 -169.99 -5.02 14.17 16 4 H -0.27 -5.32 7.11 56.52 0.40 -4.92 16 5 H -0.28 -5.63 7.11 56.52 0.40 -5.23 16 6 H -0.27 -5.32 7.11 56.52 0.40 -4.92 16 7 C -0.32 -8.71 10.25 -14.81 -0.15 -8.86 16 8 H 0.12 2.74 7.83 -52.48 -0.41 2.33 16 9 N -0.14 -4.03 3.74 -11.41 -0.04 -4.07 16 10 C -0.09 -2.04 11.49 -16.39 -0.19 -2.23 16 11 C -0.06 -1.34 6.90 -83.84 -0.58 -1.92 16 12 N -0.63 -11.25 5.47 -10.00 -0.05 -11.30 16 13 C 0.50 8.88 7.79 -10.99 -0.09 8.79 16 14 O -0.53 -11.69 13.19 5.54 0.07 -11.62 16 15 C -0.09 -1.16 5.79 -29.03 -0.17 -1.33 16 16 C -0.07 -0.87 4.39 -104.35 -0.46 -1.33 16 17 C -0.06 -0.75 9.43 -39.64 -0.37 -1.13 16 18 C -0.06 -0.74 6.33 -39.45 -0.25 -0.99 16 19 Cl -0.07 -0.76 28.97 -51.86 -1.50 -2.26 16 20 C -0.06 -0.68 9.82 -39.69 -0.39 -1.07 16 21 C -0.17 -1.93 6.27 -104.10 -0.65 -2.58 16 22 C 0.13 1.80 6.75 -38.96 -0.26 1.54 16 23 O -0.29 -3.93 11.05 -20.23 -0.22 -4.16 16 24 C 0.05 0.43 8.01 38.05 0.30 0.73 16 25 C -0.11 -0.89 7.12 -26.52 -0.19 -1.08 16 26 C -0.03 -0.91 10.85 -17.03 -0.18 -1.10 16 27 N -0.26 -7.77 10.40 30.80 0.32 -7.45 16 28 H 0.27 7.17 8.31 -40.82 -0.34 6.83 16 29 H 0.14 2.87 8.06 -52.49 -0.42 2.45 16 30 H 0.40 5.35 8.83 -40.82 -0.36 4.99 16 31 H 0.10 1.09 8.12 -51.93 -0.42 0.66 16 32 H 0.10 0.93 8.05 -51.93 -0.42 0.51 16 33 H 0.14 1.51 8.06 -52.49 -0.42 1.08 16 34 H 0.13 1.16 8.06 -52.48 -0.42 0.74 16 35 H 0.08 0.50 8.14 -51.93 -0.42 0.08 16 36 H 0.11 0.74 8.14 -51.93 -0.42 0.32 16 37 H 0.09 0.53 8.14 -51.93 -0.42 0.10 16 38 H 0.09 0.77 8.14 -51.93 -0.42 0.35 16 39 H 0.18 4.74 5.92 -52.49 -0.31 4.43 16 LS Contribution 355.97 15.07 5.36 5.36 Total: -1.00 -36.07 355.97 -8.17 -44.25 By element: Atomic # 1 Polarization: 13.82 SS G_CDS: -4.02 Total: 9.80 kcal Atomic # 6 Polarization: -7.71 SS G_CDS: -3.72 Total: -11.43 kcal Atomic # 7 Polarization: -44.99 SS G_CDS: 0.88 Total: -44.11 kcal Atomic # 8 Polarization: -15.63 SS G_CDS: -0.15 Total: -15.78 kcal Atomic # 14 Polarization: 19.19 SS G_CDS: -5.02 Total: 14.17 kcal Atomic # 17 Polarization: -0.76 SS G_CDS: -1.50 Total: -2.26 kcal Total LS contribution 5.36 Total: 5.36 kcal Total: -36.07 -8.17 -44.25 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000754380696.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 82.987 kcal (2) G-P(sol) polarization free energy of solvation -36.074 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 46.913 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.174 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.248 kcal (6) G-S(sol) free energy of system = (1) + (5) 38.739 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds