Wall clock time and date at job start Wed Apr 1 2020 04:16:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31291 * 1 3 3 Si 1.86804 * 119.99717 * 2 1 4 4 H 1.48499 * 109.46889 * 239.99469 * 3 2 1 5 5 H 1.48499 * 109.47416 * 0.02562 * 3 2 1 6 6 H 1.48508 * 109.47118 * 119.99729 * 3 2 1 7 7 C 1.38984 * 120.00266 * 179.97438 * 2 1 3 8 8 H 1.08003 * 120.00056 * 180.02562 * 7 2 1 9 9 N 1.37323 * 119.99725 * 0.02562 * 7 2 1 10 10 C 1.36495 * 126.06816 * 179.97438 * 9 7 2 11 11 C 1.35678 * 107.51092 * 180.02562 * 10 9 7 12 12 N 1.40588 * 126.08563 * 179.97438 * 11 10 9 13 13 C 1.34773 * 120.00370 * 180.02562 * 12 11 10 14 14 O 1.21306 * 120.00047 * 359.97438 * 13 12 11 15 15 C 1.50702 * 120.00322 * 180.02562 * 13 12 11 16 16 C 1.50701 * 109.47164 * 179.97438 * 15 13 12 17 17 C 1.37974 * 119.87222 * 264.99979 * 16 15 13 18 18 C 1.38343 * 120.33734 * 180.02562 * 17 16 15 19 19 Cl 1.73603 * 120.12935 * 180.22677 * 18 17 16 20 20 C 1.38490 * 119.73763 * 0.19829 * 18 17 16 21 21 C 1.37696 * 119.97225 * 359.93148 * 20 18 17 22 22 C 1.38926 * 120.79130 * 359.43978 * 21 20 18 23 23 O 1.36154 * 111.21638 * 180.88287 * 22 21 20 24 24 C 1.43777 * 109.29319 * 341.20689 * 23 22 21 25 25 C 1.51648 * 132.16657 * 179.46143 * 21 20 18 26 26 C 1.40653 * 107.83340 * 359.97438 * 11 10 9 27 27 N 1.30910 * 108.38789 * 0.02562 * 26 11 10 28 28 H 0.97003 * 119.99973 * 0.02562 * 1 2 3 29 29 H 1.07999 * 126.24260 * 359.75876 * 10 9 7 30 30 H 0.97001 * 119.99793 * 359.97438 * 12 11 10 31 31 H 1.09000 * 109.46804 * 299.99604 * 15 13 12 32 32 H 1.09003 * 109.47026 * 59.99515 * 15 13 12 33 33 H 1.08000 * 119.82850 * 359.97438 * 17 16 15 34 34 H 1.08004 * 120.01127 * 179.91565 * 20 18 17 35 35 H 1.09004 * 110.74719 * 269.27528 * 24 23 22 36 36 H 1.09006 * 110.90352 * 145.99962 * 24 23 22 37 37 H 1.09001 * 110.93426 * 313.62757 * 25 21 20 38 38 H 1.08994 * 110.93469 * 77.27192 * 25 21 20 39 39 H 1.07996 * 125.80538 * 180.02562 * 26 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3129 0.0000 0.0000 3 14 2.2469 1.6178 0.0000 4 1 3.1007 1.6964 -1.2124 5 1 1.2819 2.7465 0.0006 6 1 3.1006 1.6966 1.2126 7 6 2.0079 -1.2036 0.0005 8 1 3.0879 -1.2036 0.0010 9 7 1.3213 -2.3929 0.0005 10 6 1.8750 -3.6405 0.0005 11 6 0.8579 -4.5385 0.0000 12 7 0.9891 -5.9382 -0.0007 13 6 -0.1100 -6.7182 -0.0018 14 8 -1.2126 -6.2125 -0.0017 15 6 0.0308 -8.2186 -0.0020 16 6 -1.3370 -8.8514 -0.0026 17 6 -1.9173 -9.2348 1.1890 18 6 -3.1722 -9.8171 1.1996 19 17 -3.8998 -10.2921 2.7025 20 6 -3.8459 -10.0190 0.0066 21 6 -3.2665 -9.6392 -1.1834 22 6 -2.0124 -9.0418 -1.2051 23 8 -1.6371 -8.7300 -2.4762 24 6 -2.4260 -9.4928 -3.4051 25 6 -3.7376 -9.7359 -2.6216 26 6 -0.3512 -3.8199 0.0002 27 7 -0.0715 -2.5410 0.0003 28 1 -0.4850 0.8401 -0.0004 29 1 2.9301 -3.8707 -0.0031 30 1 1.8708 -6.3426 -0.0012 31 1 0.5769 -8.5321 -0.8916 32 1 0.5756 -8.5325 0.8884 33 1 -1.3888 -9.0803 2.1181 34 1 -4.8252 -10.4745 0.0096 35 1 -1.9370 -10.4377 -3.6421 36 1 -2.6187 -8.9210 -4.3129 37 1 -4.1401 -10.7264 -2.8338 38 1 -4.4733 -8.9629 -2.8432 39 1 -1.3418 -4.2500 0.0003 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000754380696.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:16:55 Heat of formation + Delta-G solvation = 14.759205 kcal Electronic energy + Delta-G solvation = -26750.601221 eV Core-core repulsion = 22685.604329 eV Total energy + Delta-G solvation = -4064.996892 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 347.082 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -42.24498 -41.62804 -40.18178 -38.76336 -37.19928 -35.89135 -34.93471 -34.57356 -32.33620 -31.98985 -30.28460 -29.91586 -28.38568 -26.62875 -24.41619 -23.32895 -22.98725 -22.60072 -21.39172 -21.10943 -19.31032 -18.46028 -17.96979 -17.82960 -17.38177 -17.21978 -16.97737 -16.67095 -16.19352 -15.74553 -15.26621 -14.97781 -14.89020 -14.82255 -14.63654 -14.23800 -14.02900 -13.82483 -13.47835 -13.44726 -13.27299 -12.93024 -12.85760 -12.81170 -12.68892 -12.59757 -12.25685 -12.13682 -11.78111 -11.74233 -11.42678 -10.97719 -10.82454 -10.67131 -10.08458 -9.86344 -9.04518 -8.49475 -8.45634 -6.22839 0.12086 0.12537 1.12012 1.25528 1.39787 1.56453 1.57810 1.89806 2.06914 2.24549 2.32940 2.55696 2.59114 2.98904 3.10264 3.38134 3.50223 3.76057 3.93926 4.08465 4.11218 4.17738 4.34932 4.36112 4.45605 4.53155 4.60999 4.64022 4.80334 4.85139 4.96265 5.01470 5.03660 5.12526 5.14585 5.26516 5.31333 5.43610 5.53014 5.97376 6.08308 6.34353 6.75577 6.82384 7.45676 7.51122 7.70898 8.53708 Molecular weight = 347.08amu Principal moments of inertia in cm(-1) A = 0.016608 B = 0.002321 C = 0.002199 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1685.556629 B =12061.149531 C =12730.032773 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.827 5.827 2 C -0.008 4.008 3 Si 1.020 2.980 4 H -0.253 1.253 5 H -0.279 1.279 6 H -0.253 1.253 7 C -0.355 4.355 8 H 0.141 0.859 9 N -0.169 5.169 10 C -0.082 4.082 11 C -0.041 4.041 12 N -0.618 5.618 13 C 0.499 3.501 14 O -0.574 6.574 15 C -0.080 4.080 16 C -0.088 4.088 17 C -0.070 4.070 18 C -0.073 4.073 19 Cl -0.064 7.064 20 C -0.064 4.064 21 C -0.175 4.175 22 C 0.111 3.889 23 O -0.322 6.322 24 C 0.042 3.958 25 C -0.103 4.103 26 C -0.063 4.063 27 N -0.311 5.311 28 H 0.276 0.724 29 H 0.189 0.811 30 H 0.421 0.579 31 H 0.125 0.875 32 H 0.141 0.859 33 H 0.152 0.848 34 H 0.155 0.845 35 H 0.101 0.899 36 H 0.121 0.879 37 H 0.123 0.877 38 H 0.093 0.907 39 H 0.162 0.838 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.940 -23.996 -2.882 24.187 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.455 5.455 2 C -0.219 4.219 3 Si 0.839 3.161 4 H -0.177 1.177 5 H -0.204 1.204 6 H -0.177 1.177 7 C -0.486 4.486 8 H 0.159 0.841 9 N 0.062 4.938 10 C -0.232 4.232 11 C -0.147 4.147 12 N -0.264 5.264 13 C 0.287 3.713 14 O -0.454 6.454 15 C -0.119 4.119 16 C -0.090 4.090 17 C -0.089 4.089 18 C -0.100 4.100 19 Cl -0.036 7.036 20 C -0.082 4.082 21 C -0.176 4.176 22 C 0.065 3.935 23 O -0.236 6.236 24 C -0.032 4.032 25 C -0.140 4.140 26 C -0.238 4.238 27 N -0.144 5.144 28 H 0.085 0.915 29 H 0.206 0.794 30 H 0.258 0.742 31 H 0.143 0.857 32 H 0.159 0.841 33 H 0.170 0.830 34 H 0.172 0.828 35 H 0.119 0.881 36 H 0.139 0.861 37 H 0.142 0.858 38 H 0.111 0.889 39 H 0.179 0.821 Dipole moment (debyes) X Y Z Total from point charges -2.279 -22.244 -2.850 22.542 hybrid contribution 0.406 -0.140 0.174 0.464 sum -1.873 -22.384 -2.676 22.621 Atomic orbital electron populations 1.70407 1.08479 1.29086 1.37497 1.26903 0.96466 1.04406 0.94158 0.84647 0.77522 0.73675 0.80304 1.17660 1.20383 1.17663 1.20585 0.92966 0.80914 1.54119 0.84120 1.44835 1.03573 1.04852 1.40584 1.22017 0.98840 0.84181 1.18198 1.17355 0.92608 0.84048 1.20674 1.42475 1.09932 1.02164 1.71811 1.21224 0.83572 0.90273 0.76249 1.90606 1.27764 1.76159 1.50821 1.20539 0.95398 0.87965 1.08036 1.18615 0.97040 1.03405 0.89919 1.20807 0.93906 0.96409 0.97772 1.20666 0.95617 1.06112 0.87621 1.98356 1.82836 1.90729 1.31641 1.20309 1.00418 0.98807 0.88702 1.20993 0.94971 1.04591 0.97019 1.19658 0.93173 0.94556 0.86117 1.86865 1.61505 1.62117 1.13139 1.24202 0.89277 0.97233 0.92447 1.21890 0.98504 1.05696 0.87875 1.24105 0.98995 0.91000 1.09663 1.78138 0.92122 1.16583 1.27526 0.91478 0.79386 0.74168 0.85708 0.84105 0.83029 0.82769 0.88116 0.86104 0.85842 0.88870 0.82065 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.83 -48.85 11.81 21.66 0.26 -48.59 16 2 C -0.01 -0.42 5.50 84.95 0.47 0.04 16 3 Si 1.02 39.19 29.55 68.60 2.03 41.21 16 4 H -0.25 -9.03 7.11 99.48 0.71 -8.33 16 5 H -0.28 -10.65 7.11 99.48 0.71 -9.94 16 6 H -0.25 -9.04 7.11 99.48 0.71 -8.33 16 7 C -0.35 -19.12 10.25 84.01 0.86 -18.26 16 8 H 0.14 6.52 7.83 -2.91 -0.02 6.50 16 9 N -0.17 -9.61 3.74 -190.01 -0.71 -10.32 16 10 C -0.08 -3.87 11.49 83.37 0.96 -2.91 16 11 C -0.04 -1.91 6.90 37.73 0.26 -1.65 16 12 N -0.62 -21.29 5.47 -303.93 -1.66 -22.96 16 13 C 0.50 17.32 7.79 87.66 0.68 18.00 16 14 O -0.57 -26.13 13.19 -3.11 -0.04 -26.17 16 15 C -0.08 -1.80 5.79 29.10 0.17 -1.63 16 16 C -0.09 -2.27 4.39 -19.69 -0.09 -2.36 16 17 C -0.07 -1.67 9.43 22.23 0.21 -1.46 16 18 C -0.07 -1.67 6.33 22.35 0.14 -1.53 16 19 Cl -0.06 -1.33 28.97 -2.72 -0.08 -1.41 16 20 C -0.06 -1.33 9.82 22.20 0.22 -1.11 16 21 C -0.17 -3.83 6.27 -19.52 -0.12 -3.96 16 22 C 0.11 2.92 6.75 22.67 0.15 3.08 16 23 O -0.32 -8.46 11.05 -95.30 -1.05 -9.51 16 24 C 0.04 0.66 8.01 72.56 0.58 1.24 16 25 C -0.10 -1.53 7.12 30.73 0.22 -1.31 16 26 C -0.06 -3.54 10.85 85.42 0.93 -2.62 16 27 N -0.31 -19.38 10.40 -56.46 -0.59 -19.97 16 28 H 0.28 15.01 8.31 -92.71 -0.77 14.24 16 29 H 0.19 6.90 8.06 -2.91 -0.02 6.88 16 30 H 0.42 10.13 8.83 -92.71 -0.82 9.31 16 31 H 0.12 2.29 8.12 -2.39 -0.02 2.27 16 32 H 0.14 2.06 8.05 -2.39 -0.02 2.05 16 33 H 0.15 3.08 8.06 -2.91 -0.02 3.06 16 34 H 0.15 2.41 8.06 -2.91 -0.02 2.39 16 35 H 0.10 1.06 8.14 -2.38 -0.02 1.04 16 36 H 0.12 1.49 8.14 -2.38 -0.02 1.47 16 37 H 0.12 1.04 8.14 -2.39 -0.02 1.02 16 38 H 0.09 1.40 8.14 -2.39 -0.02 1.38 16 39 H 0.16 9.39 5.92 -2.91 -0.02 9.37 16 Total: -1.00 -83.86 355.97 4.10 -79.76 By element: Atomic # 1 Polarization: 34.08 SS G_CDS: 0.31 Total: 34.38 kcal Atomic # 6 Polarization: -22.07 SS G_CDS: 5.64 Total: -16.43 kcal Atomic # 7 Polarization: -99.13 SS G_CDS: -2.70 Total: -101.83 kcal Atomic # 8 Polarization: -34.59 SS G_CDS: -1.09 Total: -35.69 kcal Atomic # 14 Polarization: 39.19 SS G_CDS: 2.03 Total: 41.21 kcal Atomic # 17 Polarization: -1.33 SS G_CDS: -0.08 Total: -1.41 kcal Total: -83.86 4.10 -79.76 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000754380696.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 94.521 kcal (2) G-P(sol) polarization free energy of solvation -83.858 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 10.663 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.096 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.762 kcal (6) G-S(sol) free energy of system = (1) + (5) 14.759 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds