Wall clock time and date at job start Wed Apr 1 2020 04:37:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86809 * 120.00075 * 2 1 4 4 H 1.48504 * 109.46582 * 239.99738 * 3 2 1 5 5 H 1.48493 * 109.46834 * 359.97438 * 3 2 1 6 6 H 1.48498 * 109.47075 * 119.99748 * 3 2 1 7 7 C 1.37878 * 120.00142 * 179.97438 * 2 1 3 8 8 H 1.07998 * 119.99955 * 179.97438 * 7 2 1 9 9 C 1.50701 * 119.99597 * 0.02562 * 7 2 1 10 10 N 1.46499 * 109.47083 * 179.97438 * 9 7 2 11 11 C 1.34775 * 120.00164 * 179.97438 * 10 9 7 12 12 O 1.21279 * 119.99988 * 0.02562 * 11 10 9 13 13 C 1.50706 * 120.00191 * 180.02562 * 11 10 9 14 14 O 1.45193 * 109.47265 * 180.02562 * 13 11 10 15 15 C 1.34707 * 117.00062 * 180.02562 * 14 13 11 16 16 O 1.21469 * 119.99998 * 359.97438 * 15 14 13 17 17 C 1.47745 * 120.00176 * 179.97438 * 15 14 13 18 18 C 1.39653 * 120.11948 * 359.97438 * 17 15 14 19 19 C 1.37952 * 119.95525 * 180.02562 * 18 17 15 20 20 C 1.38293 * 120.21705 * 359.73232 * 19 18 17 21 21 C 1.38817 * 120.24388 * 0.54154 * 20 19 18 22 22 O 1.35915 * 119.98331 * 179.72562 * 21 20 19 23 23 C 1.42901 * 116.99609 * 359.73002 * 22 21 20 24 24 F 1.39904 * 109.47113 * 60.00002 * 23 22 21 25 25 F 1.39901 * 109.46966 * 180.02562 * 23 22 21 26 26 F 1.39902 * 109.46987 * 299.99859 * 23 22 21 27 27 C 1.38486 * 120.03753 * 359.45732 * 21 20 19 28 28 H 0.97005 * 119.99686 * 0.02562 * 1 2 3 29 29 H 1.09005 * 109.46924 * 59.99935 * 9 7 2 30 30 H 1.08997 * 109.47290 * 299.99568 * 9 7 2 31 31 H 0.97007 * 119.99599 * 0.02562 * 10 9 7 32 32 H 1.08999 * 109.46546 * 59.99816 * 13 11 10 33 33 H 1.09002 * 109.47046 * 300.00897 * 13 11 10 34 34 H 1.07997 * 120.02164 * 359.97438 * 18 17 15 35 35 H 1.08001 * 119.88872 * 179.97438 * 19 18 17 36 36 H 1.07998 * 119.87899 * 180.26909 * 20 19 18 37 37 H 1.08001 * 120.10444 * 180.24884 * 27 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 3.1030 1.6963 -1.2125 5 1 1.2842 2.7464 -0.0006 6 1 3.1029 1.6965 1.2125 7 6 2.0046 -1.1940 0.0005 8 1 3.0845 -1.1940 0.0001 9 6 1.2510 -2.4991 0.0005 10 7 2.2029 -3.6127 0.0005 11 6 1.7537 -4.8833 0.0011 12 8 0.5613 -5.1049 0.0011 13 6 2.7330 -6.0288 0.0016 14 8 2.0070 -7.2862 0.0015 15 6 2.7406 -8.4160 0.0025 16 8 3.9536 -8.3525 0.0030 17 6 2.0699 -9.7324 0.0031 18 6 0.6754 -9.8084 0.0030 19 6 0.0526 -11.0394 0.0041 20 6 0.8048 -12.1999 -0.0005 21 6 2.1914 -12.1345 0.0052 22 8 2.9253 -13.2784 0.0064 23 6 2.2040 -14.5120 0.0075 24 9 1.3993 -14.5827 -1.1348 25 9 3.1072 -15.5803 0.0091 26 9 1.3992 -14.5805 1.1498 27 6 2.8273 -10.9043 0.0042 28 1 -0.4850 0.8401 -0.0004 29 1 0.6247 -2.5570 -0.8897 30 1 0.6241 -2.5567 0.8903 31 1 3.1567 -3.4354 0.0009 32 1 3.3595 -5.9706 0.8917 33 1 3.3598 -5.9714 -0.8883 34 1 0.0850 -8.9041 0.0031 35 1 -1.0258 -11.0969 0.0045 36 1 0.3115 -13.1607 -0.0041 37 1 3.9061 -10.8521 0.0046 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000764065700.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:37:28 Heat of formation + Delta-G solvation = -286.351134 kcal Electronic energy + Delta-G solvation = -28613.069253 eV Core-core repulsion = 23520.156581 eV Total energy + Delta-G solvation = -5092.912672 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 347.086 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -50.96842 -48.68033 -48.56358 -41.12234 -40.34143 -38.83779 -37.96973 -36.46963 -34.29875 -32.45548 -31.99111 -31.12799 -29.22103 -26.83840 -26.58605 -24.70837 -23.25631 -22.64172 -21.67842 -20.12122 -19.98733 -19.68309 -19.49380 -18.14179 -17.64686 -17.12006 -16.74794 -16.58050 -16.04950 -15.77996 -15.61993 -15.39948 -15.30679 -15.10754 -15.05366 -14.97194 -14.74734 -14.73004 -14.61924 -14.44312 -14.19873 -13.76488 -13.20412 -13.15757 -12.63547 -12.52431 -12.40356 -12.02675 -11.83175 -11.82416 -11.06352 -10.94040 -10.87193 -10.80371 -10.37390 -9.72200 -9.48918 -9.24954 -9.19006 -8.81098 -8.03696 -6.22289 -4.29990 0.09694 0.68716 0.89876 2.11772 2.12332 2.39096 3.10207 3.15796 3.22504 3.23018 3.27602 3.28870 3.46833 3.82549 4.03063 4.18877 4.30682 4.41914 4.58809 4.64768 4.79993 5.04538 5.13472 5.16488 5.24364 5.27555 5.40883 5.67156 5.74978 5.77734 6.13496 6.27243 7.17861 7.24843 7.41836 7.45583 7.58075 7.88727 8.44799 8.66721 8.90967 9.36487 10.87699 Molecular weight = 347.09amu Principal moments of inertia in cm(-1) A = 0.041794 B = 0.001567 C = 0.001525 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 669.797484 B =17866.187749 C =18350.872670 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.885 5.885 2 C 0.065 3.935 3 Si 0.906 3.094 4 H -0.275 1.275 5 H -0.285 1.285 6 H -0.275 1.275 7 C -0.547 4.547 8 H 0.064 0.936 9 C 0.251 3.749 10 N -0.705 5.705 11 C 0.500 3.500 12 O -0.534 6.534 13 C 0.049 3.951 14 O -0.321 6.321 15 C 0.510 3.490 16 O -0.501 6.501 17 C -0.085 4.085 18 C -0.071 4.071 19 C -0.089 4.089 20 C -0.157 4.157 21 C 0.090 3.910 22 O -0.307 6.307 23 C 0.605 3.395 24 F -0.164 7.164 25 F -0.130 7.130 26 F -0.164 7.164 27 C -0.061 4.061 28 H 0.267 0.733 29 H 0.030 0.970 30 H 0.030 0.970 31 H 0.393 0.607 32 H 0.100 0.900 33 H 0.100 0.900 34 H 0.155 0.845 35 H 0.146 0.854 36 H 0.139 0.861 37 H 0.155 0.845 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.106 -29.746 0.012 30.028 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.522 5.522 2 C -0.139 4.139 3 Si 0.733 3.267 4 H -0.200 1.200 5 H -0.210 1.210 6 H -0.200 1.200 7 C -0.585 4.585 8 H 0.082 0.918 9 C 0.131 3.869 10 N -0.356 5.356 11 C 0.283 3.717 12 O -0.412 6.412 13 C -0.028 4.028 14 O -0.236 6.236 15 C 0.354 3.646 16 O -0.390 6.390 17 C -0.086 4.086 18 C -0.089 4.089 19 C -0.107 4.107 20 C -0.176 4.176 21 C 0.048 3.952 22 O -0.228 6.228 23 C 0.514 3.486 24 F -0.146 7.146 25 F -0.111 7.111 26 F -0.146 7.146 27 C -0.079 4.079 28 H 0.077 0.923 29 H 0.048 0.952 30 H 0.048 0.952 31 H 0.226 0.774 32 H 0.118 0.882 33 H 0.118 0.882 34 H 0.173 0.827 35 H 0.164 0.836 36 H 0.157 0.843 37 H 0.172 0.828 Dipole moment (debyes) X Y Z Total from point charges 3.587 -29.739 0.011 29.955 hybrid contribution 0.905 0.713 -0.001 1.152 sum 4.491 -29.026 0.010 29.372 Atomic orbital electron populations 1.69961 1.06117 1.27553 1.48524 1.24949 0.94940 0.99489 0.94561 0.86443 0.79396 0.82159 0.78733 1.20032 1.21035 1.20026 1.21170 0.93315 0.90304 1.53739 0.91790 1.19183 0.88142 0.81483 0.98059 1.46370 1.11584 1.05314 1.72288 1.19843 0.89069 0.83965 0.78827 1.90707 1.16279 1.84540 1.49666 1.22942 0.94463 0.80480 1.04908 1.86577 1.39805 1.13837 1.83335 1.20929 0.85501 0.84947 0.73196 1.90858 1.14628 1.87965 1.45519 1.18782 0.93731 0.89584 1.06553 1.21770 0.93215 0.99607 0.94330 1.21036 1.00977 0.90714 0.97970 1.21832 0.91833 1.01345 1.02558 1.18323 0.89959 0.83758 1.03183 1.86430 1.35188 1.11794 1.89346 1.19329 0.74822 0.79678 0.74763 1.93314 1.73769 1.96084 1.51447 1.93323 1.68183 1.53324 1.96291 1.93315 1.73776 1.96093 1.51435 1.20351 1.01676 0.87233 0.98665 0.92294 0.95216 0.95206 0.77369 0.88201 0.88206 0.82685 0.83638 0.84297 0.82754 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -25.44 13.29 55.43 0.74 -24.71 16 2 C 0.06 1.75 5.46 -17.82 -0.10 1.65 16 3 Si 0.91 20.39 29.54 -169.99 -5.02 15.36 16 4 H -0.27 -6.07 7.11 56.52 0.40 -5.66 16 5 H -0.28 -6.40 7.11 56.52 0.40 -5.99 16 6 H -0.27 -6.06 7.11 56.52 0.40 -5.66 16 7 C -0.55 -14.38 9.28 -34.44 -0.32 -14.70 16 8 H 0.06 1.56 7.60 -52.49 -0.40 1.16 16 9 C 0.25 6.41 5.43 -5.19 -0.03 6.38 16 10 N -0.71 -14.03 5.55 -61.47 -0.34 -14.38 16 11 C 0.50 9.53 7.91 -10.98 -0.09 9.44 16 12 O -0.53 -12.43 16.50 -14.10 -0.23 -12.66 16 13 C 0.05 0.70 5.95 36.01 0.21 0.92 16 14 O -0.32 -4.69 9.00 -47.19 -0.42 -5.12 16 15 C 0.51 6.66 7.90 34.62 0.27 6.94 16 16 O -0.50 -7.25 16.13 -19.24 -0.31 -7.56 16 17 C -0.09 -0.91 5.87 -105.00 -0.62 -1.52 16 18 C -0.07 -0.65 9.61 -39.16 -0.38 -1.03 16 19 C -0.09 -0.64 10.02 -39.67 -0.40 -1.04 16 20 C -0.16 -1.19 8.25 -39.35 -0.32 -1.51 16 21 C 0.09 0.79 6.48 -39.28 -0.25 0.53 16 22 O -0.31 -2.60 10.37 -19.47 -0.20 -2.80 16 23 C 0.60 4.26 3.42 101.05 0.35 4.60 16 24 F -0.16 -1.13 15.54 2.25 0.03 -1.09 16 25 F -0.13 -0.90 17.53 2.25 0.04 -0.86 16 26 F -0.16 -1.13 15.57 2.25 0.04 -1.09 16 27 C -0.06 -0.58 9.53 -39.01 -0.37 -0.96 16 28 H 0.27 7.23 8.31 -40.82 -0.34 6.89 16 29 H 0.03 0.84 8.14 -51.93 -0.42 0.41 16 30 H 0.03 0.84 8.14 -51.93 -0.42 0.42 16 31 H 0.39 6.53 8.32 -40.82 -0.34 6.19 16 32 H 0.10 1.22 8.14 -51.93 -0.42 0.80 16 33 H 0.10 1.22 8.14 -51.93 -0.42 0.80 16 34 H 0.16 1.46 7.61 -52.49 -0.40 1.06 16 35 H 0.15 0.68 8.06 -52.49 -0.42 0.26 16 36 H 0.14 0.85 5.07 -52.49 -0.27 0.58 16 37 H 0.15 1.43 7.65 -52.49 -0.40 1.03 16 LS Contribution 350.64 15.07 5.28 5.28 Total: -1.00 -32.15 350.64 -5.50 -37.65 By element: Atomic # 1 Polarization: 5.33 SS G_CDS: -3.05 Total: 2.27 kcal Atomic # 6 Polarization: 11.74 SS G_CDS: -2.04 Total: 9.70 kcal Atomic # 7 Polarization: -39.48 SS G_CDS: 0.40 Total: -39.08 kcal Atomic # 8 Polarization: -26.97 SS G_CDS: -1.17 Total: -28.14 kcal Atomic # 9 Polarization: -3.16 SS G_CDS: 0.11 Total: -3.05 kcal Atomic # 14 Polarization: 20.39 SS G_CDS: -5.02 Total: 15.36 kcal Total LS contribution 5.28 Total: 5.28 kcal Total: -32.15 -5.50 -37.65 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000764065700.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -248.705 kcal (2) G-P(sol) polarization free energy of solvation -32.152 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -280.856 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.495 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.647 kcal (6) G-S(sol) free energy of system = (1) + (5) -286.351 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds