Wall clock time and date at job start Wed Apr 1 2020 04:37:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86809 * 120.00075 * 2 1 4 4 H 1.48504 * 109.46582 * 239.99738 * 3 2 1 5 5 H 1.48493 * 109.46834 * 359.97438 * 3 2 1 6 6 H 1.48498 * 109.47075 * 119.99748 * 3 2 1 7 7 C 1.37878 * 120.00142 * 179.97438 * 2 1 3 8 8 H 1.07998 * 119.99955 * 179.97438 * 7 2 1 9 9 C 1.50701 * 119.99597 * 0.02562 * 7 2 1 10 10 N 1.46499 * 109.47083 * 179.97438 * 9 7 2 11 11 C 1.34775 * 120.00164 * 179.97438 * 10 9 7 12 12 O 1.21279 * 119.99988 * 0.02562 * 11 10 9 13 13 C 1.50706 * 120.00191 * 180.02562 * 11 10 9 14 14 O 1.45193 * 109.47265 * 180.02562 * 13 11 10 15 15 C 1.34707 * 117.00062 * 180.02562 * 14 13 11 16 16 O 1.21469 * 119.99998 * 359.97438 * 15 14 13 17 17 C 1.47745 * 120.00176 * 179.97438 * 15 14 13 18 18 C 1.39653 * 120.11948 * 359.97438 * 17 15 14 19 19 C 1.37952 * 119.95525 * 180.02562 * 18 17 15 20 20 C 1.38293 * 120.21705 * 359.73232 * 19 18 17 21 21 C 1.38817 * 120.24388 * 0.54154 * 20 19 18 22 22 O 1.35915 * 119.98331 * 179.72562 * 21 20 19 23 23 C 1.42901 * 116.99609 * 359.73002 * 22 21 20 24 24 F 1.39904 * 109.47113 * 60.00002 * 23 22 21 25 25 F 1.39901 * 109.46966 * 180.02562 * 23 22 21 26 26 F 1.39902 * 109.46987 * 299.99859 * 23 22 21 27 27 C 1.38486 * 120.03753 * 359.45732 * 21 20 19 28 28 H 0.97005 * 119.99686 * 0.02562 * 1 2 3 29 29 H 1.09005 * 109.46924 * 59.99935 * 9 7 2 30 30 H 1.08997 * 109.47290 * 299.99568 * 9 7 2 31 31 H 0.97007 * 119.99599 * 0.02562 * 10 9 7 32 32 H 1.08999 * 109.46546 * 59.99816 * 13 11 10 33 33 H 1.09002 * 109.47046 * 300.00897 * 13 11 10 34 34 H 1.07997 * 120.02164 * 359.97438 * 18 17 15 35 35 H 1.08001 * 119.88872 * 179.97438 * 19 18 17 36 36 H 1.07998 * 119.87899 * 180.26909 * 20 19 18 37 37 H 1.08001 * 120.10444 * 180.24884 * 27 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 3.1030 1.6963 -1.2125 5 1 1.2842 2.7464 -0.0006 6 1 3.1029 1.6965 1.2125 7 6 2.0046 -1.1940 0.0005 8 1 3.0845 -1.1940 0.0001 9 6 1.2510 -2.4991 0.0005 10 7 2.2029 -3.6127 0.0005 11 6 1.7537 -4.8833 0.0011 12 8 0.5613 -5.1049 0.0011 13 6 2.7330 -6.0288 0.0016 14 8 2.0070 -7.2862 0.0015 15 6 2.7406 -8.4160 0.0025 16 8 3.9536 -8.3525 0.0030 17 6 2.0699 -9.7324 0.0031 18 6 0.6754 -9.8084 0.0030 19 6 0.0526 -11.0394 0.0041 20 6 0.8048 -12.1999 -0.0005 21 6 2.1914 -12.1345 0.0052 22 8 2.9253 -13.2784 0.0064 23 6 2.2040 -14.5120 0.0075 24 9 1.3993 -14.5827 -1.1348 25 9 3.1072 -15.5803 0.0091 26 9 1.3992 -14.5805 1.1498 27 6 2.8273 -10.9043 0.0042 28 1 -0.4850 0.8401 -0.0004 29 1 0.6247 -2.5570 -0.8897 30 1 0.6241 -2.5567 0.8903 31 1 3.1567 -3.4354 0.0009 32 1 3.3595 -5.9706 0.8917 33 1 3.3598 -5.9714 -0.8883 34 1 0.0850 -8.9041 0.0031 35 1 -1.0258 -11.0969 0.0045 36 1 0.3115 -13.1607 -0.0041 37 1 3.9061 -10.8521 0.0046 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000764065700.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:37:27 Heat of formation + Delta-G solvation = -306.844557 kcal Electronic energy + Delta-G solvation = -28613.957914 eV Core-core repulsion = 23520.156581 eV Total energy + Delta-G solvation = -5093.801333 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 347.086 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -51.52240 -49.23287 -49.11222 -42.01812 -41.21991 -40.35432 -38.72827 -37.59461 -36.17216 -34.40786 -32.73660 -31.84603 -30.68994 -28.54773 -27.20638 -25.66467 -24.48339 -23.90636 -22.53075 -21.64553 -20.87613 -20.24088 -20.10502 -19.26316 -18.90671 -18.22666 -17.87442 -17.56544 -17.31296 -16.95377 -16.61470 -16.42056 -16.24483 -16.17603 -15.90248 -15.86508 -15.60134 -15.52208 -15.32353 -15.22208 -14.97048 -14.69005 -14.57309 -14.40273 -14.08386 -13.81533 -13.72071 -13.23440 -13.07225 -12.95242 -12.67853 -12.54595 -12.23572 -11.96045 -11.88185 -11.51472 -10.91256 -10.79724 -10.41294 -9.91791 -9.87053 -8.28641 -6.45085 -0.66280 0.01688 0.28903 1.12293 1.23198 1.45457 1.48490 1.56294 1.56848 1.72162 2.33549 2.42312 2.53960 2.66778 2.90305 3.06638 3.36264 3.42157 3.66703 3.72581 3.85779 3.93490 4.05149 4.05907 4.12649 4.58372 4.76784 4.96955 5.05278 5.07962 5.10304 5.16568 5.23546 5.42628 5.62089 5.63665 5.83169 6.42545 6.63731 6.78524 7.21350 7.36425 8.83032 Molecular weight = 347.09amu Principal moments of inertia in cm(-1) A = 0.041794 B = 0.001567 C = 0.001525 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 669.797484 B =17866.187749 C =18350.872670 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.929 5.929 2 C 0.006 3.994 3 Si 0.984 3.016 4 H -0.263 1.263 5 H -0.286 1.286 6 H -0.263 1.263 7 C -0.559 4.559 8 H 0.086 0.914 9 C 0.267 3.733 10 N -0.699 5.699 11 C 0.501 3.499 12 O -0.581 6.581 13 C 0.060 3.940 14 O -0.336 6.336 15 C 0.515 3.485 16 O -0.518 6.518 17 C -0.101 4.101 18 C -0.075 4.075 19 C -0.079 4.079 20 C -0.150 4.150 21 C 0.085 3.915 22 O -0.315 6.315 23 C 0.610 3.390 24 F -0.161 7.161 25 F -0.129 7.129 26 F -0.161 7.161 27 C -0.065 4.065 28 H 0.269 0.731 29 H -0.007 1.007 30 H -0.007 1.007 31 H 0.413 0.587 32 H 0.127 0.873 33 H 0.127 0.873 34 H 0.150 0.850 35 H 0.176 0.824 36 H 0.157 0.843 37 H 0.154 0.846 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.452 -30.619 0.012 31.101 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.567 5.567 2 C -0.194 4.194 3 Si 0.807 3.193 4 H -0.187 1.187 5 H -0.212 1.212 6 H -0.187 1.187 7 C -0.596 4.596 8 H 0.104 0.896 9 C 0.144 3.856 10 N -0.350 5.350 11 C 0.286 3.714 12 O -0.462 6.462 13 C -0.016 4.016 14 O -0.252 6.252 15 C 0.360 3.640 16 O -0.408 6.408 17 C -0.102 4.102 18 C -0.093 4.093 19 C -0.097 4.097 20 C -0.169 4.169 21 C 0.043 3.957 22 O -0.236 6.236 23 C 0.519 3.481 24 F -0.143 7.143 25 F -0.110 7.110 26 F -0.143 7.143 27 C -0.083 4.083 28 H 0.078 0.922 29 H 0.011 0.989 30 H 0.011 0.989 31 H 0.249 0.751 32 H 0.145 0.855 33 H 0.145 0.855 34 H 0.168 0.832 35 H 0.193 0.807 36 H 0.174 0.826 37 H 0.171 0.829 Dipole moment (debyes) X Y Z Total from point charges 4.986 -30.647 0.011 31.050 hybrid contribution 0.428 0.844 -0.001 0.946 sum 5.414 -29.803 0.010 30.291 Atomic orbital electron populations 1.70122 1.08187 1.28653 1.49775 1.26029 0.95764 1.03792 0.93858 0.85220 0.77903 0.76725 0.79448 1.18742 1.21206 1.18731 1.21592 0.94441 0.90463 1.53137 0.89615 1.18626 0.88557 0.83713 0.94673 1.46039 1.11754 1.04724 1.72501 1.20623 0.89268 0.84638 0.76833 1.90684 1.18788 1.85269 1.51435 1.22816 0.92638 0.78667 1.07504 1.86567 1.40580 1.14295 1.83728 1.21260 0.85324 0.85034 0.72362 1.90841 1.15254 1.88100 1.46624 1.18707 0.94360 0.88588 1.08572 1.21816 0.92623 1.00391 0.94507 1.21334 1.02415 0.89610 0.96333 1.22088 0.91333 1.02260 1.01174 1.18377 0.90506 0.83604 1.03189 1.86412 1.35688 1.12105 1.89362 1.19224 0.74776 0.79245 0.74842 1.93321 1.73632 1.96037 1.51331 1.93329 1.68229 1.53182 1.96294 1.93322 1.73642 1.96046 1.51324 1.20319 1.01669 0.87396 0.98962 0.92222 0.98868 0.98856 0.75103 0.85491 0.85498 0.83224 0.80695 0.82566 0.82879 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -54.75 13.29 21.45 0.28 -54.47 16 2 C 0.01 0.30 5.46 84.65 0.46 0.76 16 3 Si 0.98 41.32 29.54 68.60 2.03 43.35 16 4 H -0.26 -10.47 7.11 99.48 0.71 -9.77 16 5 H -0.29 -12.01 7.11 99.48 0.71 -11.30 16 6 H -0.26 -10.47 7.11 99.48 0.71 -9.76 16 7 C -0.56 -29.38 9.28 25.60 0.24 -29.14 16 8 H 0.09 4.03 7.60 -2.91 -0.02 4.01 16 9 C 0.27 14.07 5.43 85.63 0.46 14.54 16 10 N -0.70 -27.85 5.55 -466.78 -2.59 -30.44 16 11 C 0.50 19.16 7.91 87.66 0.69 19.85 16 12 O -0.58 -27.93 16.50 15.77 0.26 -27.67 16 13 C 0.06 1.63 5.95 71.24 0.42 2.06 16 14 O -0.34 -9.67 9.00 -49.78 -0.45 -10.11 16 15 C 0.51 13.12 7.90 70.34 0.56 13.68 16 16 O -0.52 -14.52 16.13 19.94 0.32 -14.20 16 17 C -0.10 -2.09 5.87 -20.11 -0.12 -2.21 16 18 C -0.08 -1.31 9.61 22.54 0.22 -1.09 16 19 C -0.08 -0.98 10.02 22.21 0.22 -0.75 16 20 C -0.15 -1.93 8.25 22.42 0.19 -1.75 16 21 C 0.09 1.38 6.48 22.47 0.15 1.52 16 22 O -0.32 -4.91 10.37 -92.59 -0.96 -5.87 16 23 C 0.61 7.56 3.42 113.37 0.39 7.95 16 24 F -0.16 -1.90 15.54 44.97 0.70 -1.20 16 25 F -0.13 -1.62 17.53 44.97 0.79 -0.83 16 26 F -0.16 -1.90 15.57 44.97 0.70 -1.20 16 27 C -0.06 -1.20 9.53 22.64 0.22 -0.99 16 28 H 0.27 14.86 8.31 -92.70 -0.77 14.09 16 29 H -0.01 -0.39 8.14 -2.38 -0.02 -0.41 16 30 H -0.01 -0.39 8.14 -2.39 -0.02 -0.41 16 31 H 0.41 13.15 8.32 -92.70 -0.77 12.38 16 32 H 0.13 2.80 8.14 -2.39 -0.02 2.79 16 33 H 0.13 2.80 8.14 -2.39 -0.02 2.78 16 34 H 0.15 2.78 7.61 -2.91 -0.02 2.75 16 35 H 0.18 1.09 8.06 -2.91 -0.02 1.07 16 36 H 0.16 1.46 5.07 -2.91 -0.01 1.44 16 37 H 0.15 2.80 7.65 -2.91 -0.02 2.77 16 Total: -1.00 -71.35 350.64 5.57 -65.77 By element: Atomic # 1 Polarization: 12.05 SS G_CDS: 0.40 Total: 12.44 kcal Atomic # 6 Polarization: 20.33 SS G_CDS: 4.09 Total: 24.43 kcal Atomic # 7 Polarization: -82.60 SS G_CDS: -2.30 Total: -84.90 kcal Atomic # 8 Polarization: -57.03 SS G_CDS: -0.83 Total: -57.86 kcal Atomic # 9 Polarization: -5.42 SS G_CDS: 2.19 Total: -3.23 kcal Atomic # 14 Polarization: 41.32 SS G_CDS: 2.03 Total: 43.35 kcal Total: -71.35 5.57 -65.77 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000764065700.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -241.070 kcal (2) G-P(sol) polarization free energy of solvation -71.346 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -312.417 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.572 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.774 kcal (6) G-S(sol) free energy of system = (1) + (5) -306.845 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds