Wall clock time and date at job start Wed Apr 1 2020 04:35:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31411 * 1 3 3 Si 1.86809 * 119.99496 * 2 1 4 4 H 1.48503 * 109.47020 * 270.00034 * 3 2 1 5 5 H 1.48501 * 109.47125 * 30.00312 * 3 2 1 6 6 H 1.48500 * 109.46790 * 150.00138 * 3 2 1 7 7 C 1.38948 * 120.00629 * 180.02562 * 2 1 3 8 8 H 1.08003 * 119.99417 * 0.02562 * 7 2 1 9 9 N 1.37092 * 120.00320 * 179.97438 * 7 2 1 10 10 C 1.34776 * 119.99980 * 180.02562 * 9 7 2 11 11 O 1.21293 * 119.99947 * 0.02562 * 10 9 7 12 12 C 1.50702 * 119.99879 * 180.02562 * 10 9 7 13 13 O 1.45202 * 109.47171 * 179.97438 * 12 10 9 14 14 C 1.34706 * 116.99898 * 180.02562 * 13 12 10 15 15 O 1.21474 * 120.00025 * 359.97438 * 14 13 12 16 16 C 1.47743 * 119.99789 * 180.02562 * 14 13 12 17 17 C 1.39654 * 120.12456 * 359.97438 * 16 14 13 18 18 C 1.37943 * 119.96333 * 180.02562 * 17 16 14 19 19 C 1.38298 * 120.21135 * 359.72351 * 18 17 16 20 20 C 1.38825 * 120.24721 * 0.55361 * 19 18 17 21 21 O 1.35913 * 119.98208 * 179.71933 * 20 19 18 22 22 C 1.42903 * 116.99828 * 359.72917 * 21 20 19 23 23 C 1.53000 * 109.46726 * 180.02562 * 22 21 20 24 24 F 1.39895 * 109.47411 * 59.99737 * 23 22 21 25 25 F 1.39898 * 109.46890 * 180.02562 * 23 22 21 26 26 F 1.39904 * 109.47059 * 299.99479 * 23 22 21 27 27 C 1.38485 * 120.03400 * 359.44944 * 20 19 18 28 28 H 0.97005 * 120.00334 * 359.97438 * 1 2 3 29 29 H 0.97002 * 119.99751 * 0.02562 * 9 7 2 30 30 H 1.09004 * 109.47223 * 60.00016 * 12 10 9 31 31 H 1.09000 * 109.47269 * 300.00462 * 12 10 9 32 32 H 1.08006 * 120.01605 * 0.02562 * 17 16 14 33 33 H 1.08004 * 119.89872 * 180.02562 * 18 17 16 34 34 H 1.07998 * 119.88193 * 180.27182 * 19 18 17 35 35 H 1.09002 * 109.47382 * 59.99787 * 22 21 20 36 36 H 1.09001 * 109.46938 * 299.99773 * 22 21 20 37 37 H 1.07998 * 120.10164 * 180.25362 * 27 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2480 1.6179 0.0000 4 1 2.4955 2.0466 -1.4001 5 1 1.4454 2.6527 0.7001 6 1 3.5456 1.4403 0.7000 7 6 2.0090 -1.2032 -0.0005 8 1 1.4690 -2.1386 -0.0014 9 7 3.3799 -1.2032 -0.0011 10 6 4.0538 -2.3703 -0.0021 11 8 3.4474 -3.4208 -0.0031 12 6 5.5609 -2.3702 -0.0021 13 8 6.0450 -3.7392 -0.0027 14 6 7.3804 -3.9155 -0.0023 15 8 8.1203 -2.9521 -0.0019 16 6 7.9452 -5.2807 -0.0034 17 6 7.0970 -6.3902 -0.0044 18 6 7.6279 -7.6633 -0.0050 19 6 8.9988 -7.8457 -0.0103 20 6 9.8501 -6.7491 -0.0035 21 8 11.1965 -6.9346 -0.0030 22 6 11.6655 -8.2845 -0.0036 23 6 13.1954 -8.2928 -0.0023 24 9 13.6644 -7.6367 1.1409 25 9 13.6546 -9.6143 -0.0035 26 9 13.6664 -7.6350 -1.1437 27 6 9.3282 -5.4664 -0.0029 28 1 -0.4851 0.8401 0.0004 29 1 3.8648 -0.3631 -0.0007 30 1 5.9242 -1.8572 0.8884 31 1 5.9242 -1.8555 -0.8916 32 1 6.0259 -6.2513 -0.0048 33 1 6.9709 -8.5206 -0.0062 34 1 9.4087 -8.8448 -0.0151 35 1 11.2997 -8.7958 -0.8941 36 1 11.2989 -8.7968 0.8859 37 1 9.9895 -4.6125 -0.0018 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000770136164.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:35:51 Heat of formation + Delta-G solvation = -271.918909 kcal Electronic energy + Delta-G solvation = -28527.363861 eV Core-core repulsion = 23435.077018 eV Total energy + Delta-G solvation = -5092.286844 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 347.086 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -50.69336 -48.25385 -48.13401 -40.99467 -40.20985 -38.45880 -37.77529 -36.23442 -34.08664 -31.94236 -31.83704 -31.59251 -29.72040 -28.61525 -25.33062 -24.44621 -23.53367 -22.93695 -21.11783 -19.68856 -19.52508 -19.23220 -18.66514 -18.54934 -18.35749 -17.33011 -16.58061 -16.52008 -16.39907 -16.24512 -15.85406 -15.32834 -15.07626 -14.97615 -14.92196 -14.59429 -14.32163 -14.31056 -14.30115 -14.27971 -13.89040 -13.64512 -13.28816 -12.99571 -12.57266 -12.51768 -12.30578 -12.25849 -12.21191 -11.82237 -11.51795 -11.27992 -10.67017 -10.65343 -10.58486 -10.06847 -9.69656 -9.53973 -8.81600 -8.70011 -8.31360 -6.41035 -3.94089 0.30001 0.94459 1.57927 2.30773 2.34014 2.63657 2.97768 3.02498 3.07834 3.11393 3.29236 3.40742 3.53234 3.72329 4.02267 4.08976 4.21204 4.23963 4.33139 4.45573 4.69743 4.86990 4.88569 5.05605 5.09299 5.32604 5.44417 5.51579 5.63992 5.66090 5.93901 5.97298 6.06860 6.38694 6.63291 7.42272 7.68658 7.98541 8.45471 8.81585 9.27802 9.62872 10.71083 Molecular weight = 347.09amu Principal moments of inertia in cm(-1) A = 0.033002 B = 0.001676 C = 0.001612 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 848.233475 B =16701.442253 C =17364.574581 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.874 5.874 2 C 0.045 3.955 3 Si 0.879 3.121 4 H -0.269 1.269 5 H -0.274 1.274 6 H -0.268 1.268 7 C -0.309 4.309 8 H 0.123 0.877 9 N -0.578 5.578 10 C 0.448 3.552 11 O -0.558 6.558 12 C 0.059 3.941 13 O -0.317 6.317 14 C 0.506 3.494 15 O -0.505 6.505 16 C -0.079 4.079 17 C -0.085 4.085 18 C -0.090 4.090 19 C -0.174 4.174 20 C 0.109 3.891 21 O -0.298 6.298 22 C 0.013 3.987 23 C 0.466 3.534 24 F -0.172 7.172 25 F -0.172 7.172 26 F -0.172 7.172 27 C -0.079 4.079 28 H 0.276 0.724 29 H 0.373 0.627 30 H 0.090 0.910 31 H 0.090 0.910 32 H 0.152 0.848 33 H 0.140 0.860 34 H 0.134 0.866 35 H 0.111 0.889 36 H 0.111 0.889 37 H 0.149 0.851 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 25.403 -17.404 -0.028 30.793 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.513 5.513 2 C -0.159 4.159 3 Si 0.705 3.295 4 H -0.194 1.194 5 H -0.199 1.199 6 H -0.193 1.193 7 C -0.437 4.437 8 H 0.140 0.860 9 N -0.218 5.218 10 C 0.233 3.767 11 O -0.439 6.439 12 C -0.019 4.019 13 O -0.231 6.231 14 C 0.350 3.650 15 O -0.395 6.395 16 C -0.080 4.080 17 C -0.104 4.104 18 C -0.108 4.108 19 C -0.193 4.193 20 C 0.065 3.935 21 O -0.212 6.212 22 C -0.064 4.064 23 C 0.411 3.589 24 F -0.153 7.153 25 F -0.153 7.153 26 F -0.154 7.154 27 C -0.098 4.098 28 H 0.086 0.914 29 H 0.206 0.794 30 H 0.108 0.892 31 H 0.108 0.892 32 H 0.170 0.830 33 H 0.158 0.842 34 H 0.152 0.848 35 H 0.129 0.871 36 H 0.129 0.871 37 H 0.167 0.833 Dipole moment (debyes) X Y Z Total from point charges 25.141 -17.537 -0.029 30.653 hybrid contribution 0.824 1.337 0.017 1.571 sum 25.965 -16.201 -0.011 30.605 Atomic orbital electron populations 1.69612 1.05657 1.27791 1.48269 1.25039 0.95522 0.98079 0.97224 0.86683 0.79874 0.83854 0.79118 1.19385 1.19937 1.19329 1.19419 0.78644 0.96881 1.48732 0.85983 1.42028 1.07648 1.05708 1.66449 1.19152 0.86836 0.85166 0.85585 1.90599 1.69015 1.30694 1.53639 1.22806 0.95211 0.80054 1.03836 1.86583 1.22081 1.31471 1.83007 1.21045 0.81289 0.89450 0.73196 1.90838 1.60680 1.42185 1.45775 1.18823 0.92564 0.90819 1.05807 1.21679 1.01561 0.91184 0.95940 1.21004 0.94117 0.97616 0.98099 1.21491 0.94692 0.97882 1.05190 1.18528 0.80977 0.93939 1.00041 1.86046 1.20408 1.24941 1.89837 1.23821 0.89365 0.86055 1.07158 1.19958 0.90579 0.73885 0.74448 1.93250 1.90417 1.81105 1.50576 1.93236 1.90222 1.35556 1.96302 1.93252 1.90357 1.81042 1.50710 1.20384 0.93713 0.95593 1.00109 0.91365 0.79354 0.89193 0.89176 0.83050 0.84244 0.84811 0.87088 0.87096 0.83288 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -24.84 13.96 55.50 0.77 -24.07 16 2 C 0.05 1.21 5.50 -17.47 -0.10 1.12 16 3 Si 0.88 18.83 27.74 -169.99 -4.71 14.11 16 4 H -0.27 -5.64 7.11 56.52 0.40 -5.24 16 5 H -0.27 -5.89 7.11 56.52 0.40 -5.49 16 6 H -0.27 -5.23 6.52 56.52 0.37 -4.86 16 7 C -0.31 -8.50 10.16 -14.94 -0.15 -8.65 16 8 H 0.12 3.83 7.39 -52.48 -0.39 3.44 16 9 N -0.58 -13.47 5.09 -10.96 -0.06 -13.52 16 10 C 0.45 10.10 7.86 -10.98 -0.09 10.01 16 11 O -0.56 -14.85 16.08 -14.11 -0.23 -15.08 16 12 C 0.06 1.02 5.95 36.01 0.21 1.23 16 13 O -0.32 -5.48 9.00 -47.19 -0.42 -5.90 16 14 C 0.51 7.71 7.90 34.62 0.27 7.98 16 15 O -0.51 -8.43 16.14 -19.25 -0.31 -8.74 16 16 C -0.08 -0.97 5.87 -105.00 -0.62 -1.58 16 17 C -0.09 -0.90 9.61 -39.16 -0.38 -1.28 16 18 C -0.09 -0.69 10.02 -39.67 -0.40 -1.09 16 19 C -0.17 -1.18 9.04 -39.34 -0.36 -1.53 16 20 C 0.11 0.96 6.68 -39.27 -0.26 0.70 16 21 O -0.30 -2.44 10.02 -19.47 -0.20 -2.64 16 22 C 0.01 0.06 4.70 37.16 0.17 0.24 16 23 C 0.47 2.90 3.32 37.16 0.12 3.02 16 24 F -0.17 -1.37 17.26 2.25 0.04 -1.33 16 25 F -0.17 -1.00 17.32 2.25 0.04 -0.96 16 26 F -0.17 -1.37 17.26 2.25 0.04 -1.33 16 27 C -0.08 -0.86 9.53 -39.01 -0.37 -1.24 16 28 H 0.28 7.21 8.31 -40.82 -0.34 6.88 16 29 H 0.37 7.56 5.76 -40.82 -0.24 7.32 16 30 H 0.09 1.39 8.14 -51.93 -0.42 0.96 16 31 H 0.09 1.38 8.14 -51.93 -0.42 0.95 16 32 H 0.15 1.71 7.61 -52.48 -0.40 1.31 16 33 H 0.14 0.72 8.06 -52.48 -0.42 0.30 16 34 H 0.13 0.45 6.28 -52.49 -0.33 0.12 16 35 H 0.11 0.25 7.64 -51.93 -0.40 -0.14 16 36 H 0.11 0.25 7.67 -51.93 -0.40 -0.15 16 37 H 0.15 1.66 7.65 -52.49 -0.40 1.25 16 LS Contribution 349.37 15.07 5.26 5.26 Total: -1.00 -33.93 349.37 -4.68 -38.62 By element: Atomic # 1 Polarization: 9.64 SS G_CDS: -2.98 Total: 6.66 kcal Atomic # 6 Polarization: 10.86 SS G_CDS: -1.93 Total: 8.93 kcal Atomic # 7 Polarization: -38.31 SS G_CDS: 0.72 Total: -37.59 kcal Atomic # 8 Polarization: -31.20 SS G_CDS: -1.16 Total: -32.36 kcal Atomic # 9 Polarization: -3.74 SS G_CDS: 0.12 Total: -3.63 kcal Atomic # 14 Polarization: 18.83 SS G_CDS: -4.71 Total: 14.11 kcal Total LS contribution 5.26 Total: 5.26 kcal Total: -33.93 -4.68 -38.62 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000770136164.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -233.302 kcal (2) G-P(sol) polarization free energy of solvation -33.933 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -267.235 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.684 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.617 kcal (6) G-S(sol) free energy of system = (1) + (5) -271.919 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds