Wall clock time and date at job start Wed Apr 1 2020 04:35:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31411 * 1 3 3 Si 1.86809 * 119.99496 * 2 1 4 4 H 1.48503 * 109.47020 * 270.00034 * 3 2 1 5 5 H 1.48501 * 109.47125 * 30.00312 * 3 2 1 6 6 H 1.48500 * 109.46790 * 150.00138 * 3 2 1 7 7 C 1.38948 * 120.00629 * 180.02562 * 2 1 3 8 8 H 1.08003 * 119.99417 * 0.02562 * 7 2 1 9 9 N 1.37092 * 120.00320 * 179.97438 * 7 2 1 10 10 C 1.34776 * 119.99980 * 180.02562 * 9 7 2 11 11 O 1.21293 * 119.99947 * 0.02562 * 10 9 7 12 12 C 1.50702 * 119.99879 * 180.02562 * 10 9 7 13 13 O 1.45202 * 109.47171 * 179.97438 * 12 10 9 14 14 C 1.34706 * 116.99898 * 180.02562 * 13 12 10 15 15 O 1.21474 * 120.00025 * 359.97438 * 14 13 12 16 16 C 1.47743 * 119.99789 * 180.02562 * 14 13 12 17 17 C 1.39654 * 120.12456 * 359.97438 * 16 14 13 18 18 C 1.37943 * 119.96333 * 180.02562 * 17 16 14 19 19 C 1.38298 * 120.21135 * 359.72351 * 18 17 16 20 20 C 1.38825 * 120.24721 * 0.55361 * 19 18 17 21 21 O 1.35913 * 119.98208 * 179.71933 * 20 19 18 22 22 C 1.42903 * 116.99828 * 359.72917 * 21 20 19 23 23 C 1.53000 * 109.46726 * 180.02562 * 22 21 20 24 24 F 1.39895 * 109.47411 * 59.99737 * 23 22 21 25 25 F 1.39898 * 109.46890 * 180.02562 * 23 22 21 26 26 F 1.39904 * 109.47059 * 299.99479 * 23 22 21 27 27 C 1.38485 * 120.03400 * 359.44944 * 20 19 18 28 28 H 0.97005 * 120.00334 * 359.97438 * 1 2 3 29 29 H 0.97002 * 119.99751 * 0.02562 * 9 7 2 30 30 H 1.09004 * 109.47223 * 60.00016 * 12 10 9 31 31 H 1.09000 * 109.47269 * 300.00462 * 12 10 9 32 32 H 1.08006 * 120.01605 * 0.02562 * 17 16 14 33 33 H 1.08004 * 119.89872 * 180.02562 * 18 17 16 34 34 H 1.07998 * 119.88193 * 180.27182 * 19 18 17 35 35 H 1.09002 * 109.47382 * 59.99787 * 22 21 20 36 36 H 1.09001 * 109.46938 * 299.99773 * 22 21 20 37 37 H 1.07998 * 120.10164 * 180.25362 * 27 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2480 1.6179 0.0000 4 1 2.4955 2.0466 -1.4001 5 1 1.4454 2.6527 0.7001 6 1 3.5456 1.4403 0.7000 7 6 2.0090 -1.2032 -0.0005 8 1 1.4690 -2.1386 -0.0014 9 7 3.3799 -1.2032 -0.0011 10 6 4.0538 -2.3703 -0.0021 11 8 3.4474 -3.4208 -0.0031 12 6 5.5609 -2.3702 -0.0021 13 8 6.0450 -3.7392 -0.0027 14 6 7.3804 -3.9155 -0.0023 15 8 8.1203 -2.9521 -0.0019 16 6 7.9452 -5.2807 -0.0034 17 6 7.0970 -6.3902 -0.0044 18 6 7.6279 -7.6633 -0.0050 19 6 8.9988 -7.8457 -0.0103 20 6 9.8501 -6.7491 -0.0035 21 8 11.1965 -6.9346 -0.0030 22 6 11.6655 -8.2845 -0.0036 23 6 13.1954 -8.2928 -0.0023 24 9 13.6644 -7.6367 1.1409 25 9 13.6546 -9.6143 -0.0035 26 9 13.6664 -7.6350 -1.1437 27 6 9.3282 -5.4664 -0.0029 28 1 -0.4851 0.8401 0.0004 29 1 3.8648 -0.3631 -0.0007 30 1 5.9242 -1.8572 0.8884 31 1 5.9242 -1.8555 -0.8916 32 1 6.0259 -6.2513 -0.0048 33 1 6.9709 -8.5206 -0.0062 34 1 9.4087 -8.8448 -0.0151 35 1 11.2997 -8.7958 -0.8941 36 1 11.2989 -8.7968 0.8859 37 1 9.9895 -4.6125 -0.0018 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000770136164.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:35:50 Heat of formation + Delta-G solvation = -294.342835 kcal Electronic energy + Delta-G solvation = -28528.336236 eV Core-core repulsion = 23435.077018 eV Total energy + Delta-G solvation = -5093.259218 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 347.086 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -51.18692 -48.73151 -48.67691 -41.92791 -41.15122 -40.18298 -38.57006 -37.53689 -36.08772 -33.87068 -32.60474 -32.27667 -30.41606 -30.00008 -26.73621 -25.61028 -24.31610 -23.61595 -22.03349 -21.55240 -20.54058 -20.23690 -19.72136 -19.24618 -18.92088 -18.38955 -17.80770 -17.78886 -17.21797 -17.04597 -16.97219 -16.63912 -16.21805 -15.85530 -15.59171 -15.50246 -15.46600 -15.10609 -14.92525 -14.83803 -14.82161 -14.72119 -14.44648 -14.23149 -14.22425 -13.77839 -13.68544 -13.09881 -13.00938 -12.87125 -12.46191 -12.37152 -12.21999 -12.00835 -11.92413 -11.78048 -11.59223 -10.61928 -10.34420 -10.25044 -9.48698 -8.46199 -6.09252 -0.51187 0.25170 1.02003 1.29537 1.33085 1.34342 1.34988 1.44837 1.74874 1.99261 2.19950 2.62266 2.65285 2.77992 2.90628 3.08175 3.26738 3.50152 3.62697 3.84741 3.89335 3.95796 3.98818 4.08026 4.09303 4.11831 4.20598 4.35113 4.75899 4.99262 5.12202 5.21318 5.29844 5.42584 5.46961 5.84926 6.04217 6.42812 6.54291 6.76721 7.25120 7.76310 8.70159 Molecular weight = 347.09amu Principal moments of inertia in cm(-1) A = 0.033002 B = 0.001676 C = 0.001612 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 848.233475 B =16701.442253 C =17364.574581 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.924 5.924 2 C -0.007 4.007 3 Si 0.960 3.040 4 H -0.255 1.255 5 H -0.272 1.272 6 H -0.232 1.232 7 C -0.333 4.333 8 H 0.062 0.938 9 N -0.575 5.575 10 C 0.450 3.550 11 O -0.606 6.606 12 C 0.067 3.933 13 O -0.335 6.335 14 C 0.508 3.492 15 O -0.525 6.525 16 C -0.101 4.101 17 C -0.098 4.098 18 C -0.082 4.082 19 C -0.153 4.153 20 C 0.113 3.887 21 O -0.317 6.317 22 C 0.008 3.992 23 C 0.464 3.536 24 F -0.186 7.186 25 F -0.169 7.169 26 F -0.186 7.186 27 C -0.094 4.094 28 H 0.282 0.718 29 H 0.393 0.607 30 H 0.117 0.883 31 H 0.118 0.882 32 H 0.136 0.864 33 H 0.171 0.829 34 H 0.180 0.820 35 H 0.142 0.858 36 H 0.142 0.858 37 H 0.137 0.863 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 28.113 -18.078 0.002 33.424 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.564 5.564 2 C -0.207 4.207 3 Si 0.779 3.221 4 H -0.180 1.180 5 H -0.197 1.197 6 H -0.155 1.155 7 C -0.461 4.461 8 H 0.081 0.919 9 N -0.217 5.217 10 C 0.237 3.763 11 O -0.490 6.490 12 C -0.010 4.010 13 O -0.250 6.250 14 C 0.354 3.646 15 O -0.416 6.416 16 C -0.102 4.102 17 C -0.117 4.117 18 C -0.099 4.099 19 C -0.171 4.171 20 C 0.069 3.931 21 O -0.231 6.231 22 C -0.068 4.068 23 C 0.409 3.591 24 F -0.168 7.168 25 F -0.150 7.150 26 F -0.168 7.168 27 C -0.113 4.113 28 H 0.092 0.908 29 H 0.229 0.771 30 H 0.135 0.865 31 H 0.136 0.864 32 H 0.154 0.846 33 H 0.188 0.812 34 H 0.197 0.803 35 H 0.160 0.840 36 H 0.160 0.840 37 H 0.155 0.845 Dipole moment (debyes) X Y Z Total from point charges 27.884 -18.223 0.003 33.311 hybrid contribution 0.032 1.316 0.004 1.317 sum 27.916 -16.907 0.006 32.637 Atomic orbital electron populations 1.69777 1.08026 1.29545 1.49031 1.26068 0.96452 1.02577 0.95598 0.85438 0.79585 0.76885 0.80156 1.17954 1.19687 1.15541 1.19005 0.80675 0.95374 1.51092 0.91947 1.41805 1.06145 1.06987 1.66790 1.20093 0.89137 0.84090 0.83006 1.90575 1.70856 1.32500 1.55113 1.22661 0.90845 0.81055 1.06455 1.86583 1.23640 1.31235 1.83559 1.21569 0.80160 0.90667 0.72229 1.90811 1.60660 1.43072 1.47064 1.18706 0.93291 0.89514 1.08711 1.21676 1.00725 0.92276 0.96984 1.21349 0.95148 0.97072 0.96353 1.21943 0.93861 0.99232 1.02060 1.18510 0.81634 0.93613 0.99362 1.86009 1.19950 1.27431 1.89728 1.24180 0.87721 0.84714 1.10175 1.20258 0.91641 0.73639 0.73530 1.93224 1.90764 1.81471 1.51306 1.93242 1.90347 1.35178 1.96230 1.93226 1.90705 1.81410 1.51436 1.20325 0.92969 0.96677 1.01300 0.90818 0.77103 0.86499 0.86392 0.84619 0.81152 0.80295 0.84023 0.84039 0.84479 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -54.26 13.96 21.66 0.30 -53.95 16 2 C -0.01 -0.37 5.50 84.93 0.47 0.10 16 3 Si 0.96 37.78 27.74 68.60 1.90 39.68 16 4 H -0.26 -9.54 7.11 99.48 0.71 -8.83 16 5 H -0.27 -10.61 7.11 99.48 0.71 -9.90 16 6 H -0.23 -7.74 6.52 99.48 0.65 -7.09 16 7 C -0.33 -19.09 10.16 84.04 0.85 -18.23 16 8 H 0.06 4.24 7.39 -2.91 -0.02 4.22 16 9 N -0.58 -26.85 5.09 -306.99 -1.56 -28.41 16 10 C 0.45 20.59 7.86 87.66 0.69 21.28 16 11 O -0.61 -33.78 16.08 15.73 0.25 -33.53 16 12 C 0.07 2.26 5.95 71.24 0.42 2.69 16 13 O -0.34 -11.67 9.00 -49.77 -0.45 -12.12 16 14 C 0.51 15.56 7.90 70.34 0.56 16.12 16 15 O -0.53 -17.44 16.14 19.92 0.32 -17.12 16 16 C -0.10 -2.47 5.87 -20.11 -0.12 -2.58 16 17 C -0.10 -2.00 9.61 22.54 0.22 -1.79 16 18 C -0.08 -0.99 10.02 22.21 0.22 -0.77 16 19 C -0.15 -1.41 9.04 22.42 0.20 -1.20 16 20 C 0.11 1.70 6.68 22.47 0.15 1.85 16 21 O -0.32 -4.37 10.02 -92.57 -0.93 -5.30 16 22 C 0.01 0.04 4.70 71.98 0.34 0.38 16 23 C 0.46 4.77 3.32 71.98 0.24 5.00 16 24 F -0.19 -2.72 17.26 44.97 0.78 -1.94 16 25 F -0.17 -1.56 17.32 44.97 0.78 -0.79 16 26 F -0.19 -2.72 17.26 44.97 0.78 -1.95 16 27 C -0.09 -1.99 9.53 22.64 0.22 -1.78 16 28 H 0.28 15.08 8.31 -92.70 -0.77 14.31 16 29 H 0.39 15.08 5.76 -92.71 -0.53 14.54 16 30 H 0.12 3.36 8.14 -2.39 -0.02 3.34 16 31 H 0.12 3.37 8.14 -2.39 -0.02 3.35 16 32 H 0.14 3.16 7.61 -2.91 -0.02 3.13 16 33 H 0.17 1.02 8.06 -2.91 -0.02 1.00 16 34 H 0.18 0.02 6.28 -2.91 -0.02 0.00 16 35 H 0.14 -0.08 7.64 -2.39 -0.02 -0.10 16 36 H 0.14 -0.08 7.67 -2.39 -0.02 -0.10 16 37 H 0.14 3.13 7.65 -2.91 -0.02 3.11 16 Total: -1.00 -80.58 349.37 7.20 -73.38 By element: Atomic # 1 Polarization: 20.41 SS G_CDS: 0.57 Total: 20.98 kcal Atomic # 6 Polarization: 16.61 SS G_CDS: 4.46 Total: 21.07 kcal Atomic # 7 Polarization: -81.10 SS G_CDS: -1.26 Total: -82.36 kcal Atomic # 8 Polarization: -67.27 SS G_CDS: -0.80 Total: -68.07 kcal Atomic # 9 Polarization: -7.01 SS G_CDS: 2.33 Total: -4.68 kcal Atomic # 14 Polarization: 37.78 SS G_CDS: 1.90 Total: 39.68 kcal Total: -80.58 7.20 -73.38 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000770136164.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -220.967 kcal (2) G-P(sol) polarization free energy of solvation -80.579 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -301.546 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.203 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.375 kcal (6) G-S(sol) free energy of system = (1) + (5) -294.343 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds