Wall clock time and date at job start Wed Apr 1 2020 04:23:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86792 * 120.00114 * 2 1 4 4 H 1.48498 * 109.47114 * 269.99418 * 3 2 1 5 5 H 1.48502 * 109.47175 * 29.99654 * 3 2 1 6 6 H 1.48500 * 109.47124 * 149.99509 * 3 2 1 7 7 C 1.37881 * 119.99775 * 179.97438 * 2 1 3 8 8 H 1.07992 * 119.99857 * 180.02562 * 7 2 1 9 9 C 1.50701 * 120.00030 * 0.02562 * 7 2 1 10 10 N 1.46497 * 109.47262 * 179.97438 * 9 7 2 11 11 C 1.34770 * 120.00339 * 180.02562 * 10 9 7 12 12 O 1.21284 * 119.99873 * 0.02562 * 11 10 9 13 13 C 1.50699 * 120.00270 * 180.02562 * 11 10 9 14 14 O 1.45205 * 109.46992 * 179.97438 * 13 11 10 15 15 C 1.34759 * 116.99634 * 179.97438 * 14 13 11 16 16 O 1.21506 * 119.99794 * 0.02562 * 15 14 13 17 17 C 1.47400 * 119.99841 * 180.02562 * 15 14 13 18 18 C 1.39772 * 120.19569 * 359.72211 * 17 15 14 19 19 C 1.37761 * 119.90102 * 180.25291 * 18 17 15 20 20 C 1.38569 * 120.30670 * 0.02562 * 19 18 17 21 21 C 1.50700 * 119.79438 * 180.02562 * 20 19 18 22 22 F 1.39899 * 109.47162 * 269.97471 * 21 20 19 23 23 F 1.39899 * 109.47458 * 29.97806 * 21 20 19 24 24 F 1.39905 * 109.46974 * 149.97996 * 21 20 19 25 25 C 1.38050 * 120.40598 * 359.97438 * 20 19 18 26 26 C 1.38707 * 120.08743 * 359.97438 * 25 20 19 27 27 O 1.35642 * 120.15670 * 180.02562 * 26 25 20 28 28 H 0.97001 * 119.99610 * 0.02562 * 1 2 3 29 29 H 1.09003 * 109.46670 * 60.00169 * 9 7 2 30 30 H 1.08997 * 109.47289 * 300.00535 * 9 7 2 31 31 H 0.97005 * 119.99601 * 0.02562 * 10 9 7 32 32 H 1.09003 * 109.47277 * 60.00111 * 13 11 10 33 33 H 1.09002 * 109.46681 * 299.99859 * 13 11 10 34 34 H 1.08003 * 120.04955 * 0.25363 * 18 17 15 35 35 H 1.07995 * 119.84958 * 180.02562 * 19 18 17 36 36 H 1.08000 * 119.95737 * 180.02562 * 25 20 19 37 37 H 0.96693 * 114.00245 * 269.98432 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4968 2.0462 -1.4001 5 1 1.4466 2.6526 0.7000 6 1 3.5467 1.4401 0.7001 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0010 9 6 1.2510 -2.4992 0.0005 10 7 2.2029 -3.6128 0.0005 11 6 1.7537 -4.8834 0.0000 12 8 0.5612 -5.1050 -0.0009 13 6 2.7329 -6.0288 0.0006 14 8 2.0068 -7.2863 0.0005 15 6 2.7407 -8.4165 0.0004 16 8 3.9541 -8.3529 0.0009 17 6 2.0715 -9.7298 -0.0003 18 6 0.6760 -9.8077 0.0050 19 6 0.0568 -11.0383 0.0096 20 6 0.8113 -12.2007 0.0095 21 6 0.1220 -13.5408 0.0140 22 9 -0.0870 -13.9533 1.3344 23 9 -1.1092 -13.4342 -0.6417 24 9 0.9224 -14.4790 -0.6465 25 6 2.1904 -12.1385 0.0044 26 6 2.8310 -10.9082 -0.0014 27 8 4.1859 -10.8455 -0.0070 28 1 -0.4849 0.8401 -0.0004 29 1 0.6247 -2.5571 -0.8897 30 1 0.6239 -2.5567 0.8902 31 1 3.1566 -3.4355 0.0009 32 1 3.3589 -5.9713 0.8911 33 1 3.3602 -5.9710 -0.8890 34 1 0.0839 -8.9044 0.0054 35 1 -1.0215 -11.0975 0.0132 36 1 2.7712 -13.0490 0.0040 37 1 4.5824 -10.8248 0.8747 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000776399520.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:23:09 Heat of formation + Delta-G solvation = -285.070175 kcal Electronic energy + Delta-G solvation = -28837.688469 eV Core-core repulsion = 23744.831344 eV Total energy + Delta-G solvation = -5092.857125 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 347.086 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -50.64923 -48.15693 -48.10694 -41.16708 -39.85045 -38.68227 -37.46463 -36.34044 -34.31250 -32.90654 -32.45275 -30.67528 -29.38034 -27.42861 -26.50323 -23.68539 -23.46015 -22.59056 -21.35334 -20.02497 -19.56457 -18.97830 -18.91883 -18.39924 -17.73626 -17.54255 -16.76575 -16.74773 -16.11486 -15.67984 -15.51938 -15.20523 -14.98654 -14.92475 -14.71886 -14.61301 -14.55265 -14.42126 -14.24881 -14.16714 -14.00371 -13.28224 -13.11472 -12.88282 -12.69551 -12.59605 -12.34595 -12.04091 -11.83863 -11.43419 -11.05300 -10.96169 -10.81325 -10.69282 -10.38240 -9.94373 -9.48512 -9.45083 -9.26445 -8.82599 -8.05116 -6.23478 -4.31064 -0.23435 0.52438 1.97692 2.05704 2.17674 2.89908 3.09659 3.11687 3.20596 3.26985 3.29128 3.38803 3.67408 3.82237 3.88889 4.14955 4.27701 4.32510 4.45889 4.64453 4.80473 5.00123 5.12208 5.14772 5.20775 5.25773 5.33779 5.47956 5.51905 5.90296 6.11638 7.08547 7.16659 7.23467 7.40565 7.44808 7.57116 7.87554 8.43415 8.65602 8.89638 9.35444 10.86586 Molecular weight = 347.09amu Principal moments of inertia in cm(-1) A = 0.025454 B = 0.001766 C = 0.001670 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1099.757683 B =15853.768282 C =16765.901116 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.884 5.884 2 C 0.064 3.936 3 Si 0.906 3.094 4 H -0.278 1.278 5 H -0.284 1.284 6 H -0.272 1.272 7 C -0.546 4.546 8 H 0.064 0.936 9 C 0.251 3.749 10 N -0.705 5.705 11 C 0.500 3.500 12 O -0.535 6.535 13 C 0.050 3.950 14 O -0.324 6.324 15 C 0.504 3.496 16 O -0.485 6.485 17 C -0.121 4.121 18 C -0.041 4.041 19 C -0.094 4.094 20 C -0.136 4.136 21 C 0.509 3.491 22 F -0.173 7.173 23 F -0.172 7.172 24 F -0.174 7.174 25 C -0.113 4.113 26 C 0.175 3.825 27 O -0.472 6.472 28 H 0.267 0.733 29 H 0.030 0.970 30 H 0.030 0.970 31 H 0.393 0.607 32 H 0.099 0.901 33 H 0.100 0.900 34 H 0.163 0.837 35 H 0.150 0.850 36 H 0.152 0.848 37 H 0.402 0.598 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.362 -27.815 1.734 28.208 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.521 5.521 2 C -0.140 4.140 3 Si 0.733 3.267 4 H -0.204 1.204 5 H -0.210 1.210 6 H -0.197 1.197 7 C -0.584 4.584 8 H 0.083 0.917 9 C 0.131 3.869 10 N -0.355 5.355 11 C 0.283 3.717 12 O -0.412 6.412 13 C -0.027 4.027 14 O -0.239 6.239 15 C 0.348 3.652 16 O -0.374 6.374 17 C -0.123 4.123 18 C -0.059 4.059 19 C -0.112 4.112 20 C -0.138 4.138 21 C 0.455 3.545 22 F -0.154 7.154 23 F -0.153 7.153 24 F -0.155 7.155 25 C -0.131 4.131 26 C 0.129 3.871 27 O -0.283 6.283 28 H 0.077 0.923 29 H 0.048 0.952 30 H 0.048 0.952 31 H 0.226 0.774 32 H 0.117 0.883 33 H 0.118 0.882 34 H 0.181 0.819 35 H 0.168 0.832 36 H 0.170 0.830 37 H 0.261 0.739 Dipole moment (debyes) X Y Z Total from point charges 3.611 -27.795 1.142 28.052 hybrid contribution 1.016 0.864 0.444 1.406 sum 4.627 -26.931 1.586 27.371 Atomic orbital electron populations 1.69971 1.06118 1.27455 1.48593 1.24958 0.94950 0.99525 0.94578 0.86380 0.79592 0.82467 0.78272 1.20413 1.20965 1.19716 1.21202 0.93343 0.90280 1.53625 0.91744 1.19187 0.88142 0.81499 0.98059 1.46371 1.11589 1.05321 1.72264 1.19846 0.89074 0.83972 0.78836 1.90708 1.16273 1.84547 1.49680 1.22922 0.94442 0.80494 1.04830 1.86591 1.39915 1.13877 1.83541 1.20814 0.85690 0.84784 0.73948 1.90887 1.14244 1.87771 1.44454 1.19836 0.94417 0.90537 1.07477 1.21616 0.92719 0.99099 0.92507 1.21014 1.01342 0.90493 0.98341 1.20100 0.94637 0.92537 1.06538 1.18212 0.76973 0.85248 0.74093 1.93253 1.94975 1.91527 1.35627 1.93225 1.44669 1.96190 1.81208 1.93217 1.73408 1.67861 1.81047 1.21131 0.92933 0.98621 1.00462 1.18193 0.84075 0.89720 0.95138 1.84781 1.13837 1.95689 1.34022 0.92341 0.95222 0.95206 0.77369 0.88291 0.88249 0.81948 0.83213 0.83012 0.73886 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -25.42 13.29 55.43 0.74 -24.68 16 2 C 0.06 1.73 5.46 -17.82 -0.10 1.63 16 3 Si 0.91 20.37 29.54 -169.99 -5.02 15.34 16 4 H -0.28 -6.19 7.11 56.52 0.40 -5.79 16 5 H -0.28 -6.37 7.11 56.52 0.40 -5.97 16 6 H -0.27 -5.95 7.11 56.52 0.40 -5.55 16 7 C -0.55 -14.33 9.28 -34.44 -0.32 -14.65 16 8 H 0.06 1.57 7.60 -52.49 -0.40 1.17 16 9 C 0.25 6.39 5.43 -5.19 -0.03 6.36 16 10 N -0.71 -13.99 5.55 -61.47 -0.34 -14.33 16 11 C 0.50 9.48 7.91 -10.99 -0.09 9.39 16 12 O -0.53 -12.37 16.50 -14.11 -0.23 -12.61 16 13 C 0.05 0.71 5.95 36.00 0.21 0.93 16 14 O -0.32 -4.69 9.01 -47.33 -0.43 -5.11 16 15 C 0.50 6.46 7.89 34.46 0.27 6.73 16 16 O -0.49 -6.83 14.95 -26.59 -0.40 -7.23 16 17 C -0.12 -1.24 5.89 -104.86 -0.62 -1.86 16 18 C -0.04 -0.36 9.61 -39.18 -0.38 -0.74 16 19 C -0.09 -0.69 9.37 -39.63 -0.37 -1.06 16 20 C -0.14 -1.01 5.46 -104.57 -0.57 -1.58 16 21 C 0.51 3.78 3.36 36.01 0.12 3.90 16 22 F -0.17 -1.36 17.30 2.25 0.04 -1.32 16 23 F -0.17 -1.35 16.44 2.25 0.04 -1.32 16 24 F -0.17 -1.35 16.44 2.25 0.04 -1.31 16 25 C -0.11 -0.82 9.32 -39.48 -0.37 -1.19 16 26 C 0.18 1.55 6.72 -38.67 -0.26 1.29 16 27 O -0.47 -4.12 11.58 -40.51 -0.47 -4.59 16 28 H 0.27 7.19 8.31 -40.82 -0.34 6.86 16 29 H 0.03 0.84 8.14 -51.93 -0.42 0.41 16 30 H 0.03 0.84 8.14 -51.93 -0.42 0.41 16 31 H 0.39 6.51 8.32 -40.82 -0.34 6.17 16 32 H 0.10 1.18 8.14 -51.93 -0.42 0.76 16 33 H 0.10 1.22 8.14 -51.93 -0.42 0.80 16 34 H 0.16 1.44 7.61 -52.48 -0.40 1.05 16 35 H 0.15 0.82 7.59 -52.49 -0.40 0.42 16 36 H 0.15 0.83 7.58 -52.49 -0.40 0.44 16 37 H 0.40 1.82 9.06 45.56 0.41 2.24 16 LS Contribution 352.18 15.07 5.31 5.31 Total: -1.00 -33.69 352.18 -5.57 -39.26 By element: Atomic # 1 Polarization: 5.77 SS G_CDS: -2.35 Total: 3.43 kcal Atomic # 6 Polarization: 11.64 SS G_CDS: -2.49 Total: 9.15 kcal Atomic # 7 Polarization: -39.41 SS G_CDS: 0.40 Total: -39.01 kcal Atomic # 8 Polarization: -28.01 SS G_CDS: -1.53 Total: -29.54 kcal Atomic # 9 Polarization: -4.06 SS G_CDS: 0.11 Total: -3.95 kcal Atomic # 14 Polarization: 20.37 SS G_CDS: -5.02 Total: 15.34 kcal Total LS contribution 5.31 Total: 5.31 kcal Total: -33.69 -5.57 -39.26 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000776399520.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -245.810 kcal (2) G-P(sol) polarization free energy of solvation -33.695 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -279.505 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.565 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.260 kcal (6) G-S(sol) free energy of system = (1) + (5) -285.070 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds