Wall clock time and date at job start Wed Apr 1 2020 04:23:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86792 * 120.00114 * 2 1 4 4 H 1.48498 * 109.47114 * 269.99418 * 3 2 1 5 5 H 1.48502 * 109.47175 * 29.99654 * 3 2 1 6 6 H 1.48500 * 109.47124 * 149.99509 * 3 2 1 7 7 C 1.37881 * 119.99775 * 179.97438 * 2 1 3 8 8 H 1.07992 * 119.99857 * 180.02562 * 7 2 1 9 9 C 1.50701 * 120.00030 * 0.02562 * 7 2 1 10 10 N 1.46497 * 109.47262 * 179.97438 * 9 7 2 11 11 C 1.34770 * 120.00339 * 180.02562 * 10 9 7 12 12 O 1.21284 * 119.99873 * 0.02562 * 11 10 9 13 13 C 1.50699 * 120.00270 * 180.02562 * 11 10 9 14 14 O 1.45205 * 109.46992 * 179.97438 * 13 11 10 15 15 C 1.34759 * 116.99634 * 179.97438 * 14 13 11 16 16 O 1.21506 * 119.99794 * 0.02562 * 15 14 13 17 17 C 1.47400 * 119.99841 * 180.02562 * 15 14 13 18 18 C 1.39772 * 120.19569 * 359.72211 * 17 15 14 19 19 C 1.37761 * 119.90102 * 180.25291 * 18 17 15 20 20 C 1.38569 * 120.30670 * 0.02562 * 19 18 17 21 21 C 1.50700 * 119.79438 * 180.02562 * 20 19 18 22 22 F 1.39899 * 109.47162 * 269.97471 * 21 20 19 23 23 F 1.39899 * 109.47458 * 29.97806 * 21 20 19 24 24 F 1.39905 * 109.46974 * 149.97996 * 21 20 19 25 25 C 1.38050 * 120.40598 * 359.97438 * 20 19 18 26 26 C 1.38707 * 120.08743 * 359.97438 * 25 20 19 27 27 O 1.35642 * 120.15670 * 180.02562 * 26 25 20 28 28 H 0.97001 * 119.99610 * 0.02562 * 1 2 3 29 29 H 1.09003 * 109.46670 * 60.00169 * 9 7 2 30 30 H 1.08997 * 109.47289 * 300.00535 * 9 7 2 31 31 H 0.97005 * 119.99601 * 0.02562 * 10 9 7 32 32 H 1.09003 * 109.47277 * 60.00111 * 13 11 10 33 33 H 1.09002 * 109.46681 * 299.99859 * 13 11 10 34 34 H 1.08003 * 120.04955 * 0.25363 * 18 17 15 35 35 H 1.07995 * 119.84958 * 180.02562 * 19 18 17 36 36 H 1.08000 * 119.95737 * 180.02562 * 25 20 19 37 37 H 0.96693 * 114.00245 * 269.98432 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4968 2.0462 -1.4001 5 1 1.4466 2.6526 0.7000 6 1 3.5467 1.4401 0.7001 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0010 9 6 1.2510 -2.4992 0.0005 10 7 2.2029 -3.6128 0.0005 11 6 1.7537 -4.8834 0.0000 12 8 0.5612 -5.1050 -0.0009 13 6 2.7329 -6.0288 0.0006 14 8 2.0068 -7.2863 0.0005 15 6 2.7407 -8.4165 0.0004 16 8 3.9541 -8.3529 0.0009 17 6 2.0715 -9.7298 -0.0003 18 6 0.6760 -9.8077 0.0050 19 6 0.0568 -11.0383 0.0096 20 6 0.8113 -12.2007 0.0095 21 6 0.1220 -13.5408 0.0140 22 9 -0.0870 -13.9533 1.3344 23 9 -1.1092 -13.4342 -0.6417 24 9 0.9224 -14.4790 -0.6465 25 6 2.1904 -12.1385 0.0044 26 6 2.8310 -10.9082 -0.0014 27 8 4.1859 -10.8455 -0.0070 28 1 -0.4849 0.8401 -0.0004 29 1 0.6247 -2.5571 -0.8897 30 1 0.6239 -2.5567 0.8902 31 1 3.1566 -3.4355 0.0009 32 1 3.3589 -5.9713 0.8911 33 1 3.3602 -5.9710 -0.8890 34 1 0.0839 -8.9044 0.0054 35 1 -1.0215 -11.0975 0.0132 36 1 2.7712 -13.0490 0.0040 37 1 4.5824 -10.8248 0.8747 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000776399520.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:23:09 Heat of formation + Delta-G solvation = -307.722785 kcal Electronic energy + Delta-G solvation = -28838.670760 eV Core-core repulsion = 23744.831344 eV Total energy + Delta-G solvation = -5093.839416 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 347.086 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -51.25256 -48.76074 -48.71258 -42.05877 -40.85832 -40.10169 -38.14642 -37.39732 -36.17927 -34.41800 -33.60112 -31.30932 -30.82797 -28.76214 -27.67510 -24.86019 -24.19145 -24.01734 -22.23998 -21.64954 -20.20976 -19.58500 -19.55471 -19.46079 -18.97255 -18.31429 -18.11330 -17.82915 -17.31420 -17.04822 -16.67883 -16.35861 -16.14312 -15.99078 -15.59435 -15.52897 -15.25009 -15.13598 -14.99769 -14.85247 -14.76896 -14.56836 -14.53243 -14.07027 -13.80165 -13.77030 -13.54569 -13.21585 -13.04554 -12.93884 -12.72006 -12.23111 -12.19014 -11.94398 -11.57546 -11.49591 -10.91517 -10.81655 -10.63159 -10.06622 -9.92796 -8.29633 -6.45940 -0.94191 -0.08212 1.09613 1.13055 1.44887 1.46308 1.47118 1.55246 1.57722 2.18640 2.32256 2.48664 2.56058 2.78529 3.05759 3.06820 3.29345 3.42375 3.56878 3.70942 3.77804 3.96690 4.03325 4.05124 4.21199 4.62607 4.67329 4.83229 4.88245 5.06011 5.13429 5.22515 5.29239 5.41933 5.62809 5.82414 6.44287 6.61273 6.63190 6.77728 7.20525 7.35563 8.82316 Molecular weight = 347.09amu Principal moments of inertia in cm(-1) A = 0.025454 B = 0.001766 C = 0.001670 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1099.757683 B =15853.768282 C =16765.901116 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.929 5.929 2 C 0.004 3.996 3 Si 0.984 3.016 4 H -0.272 1.272 5 H -0.285 1.285 6 H -0.255 1.255 7 C -0.557 4.557 8 H 0.086 0.914 9 C 0.267 3.733 10 N -0.699 5.699 11 C 0.500 3.500 12 O -0.582 6.582 13 C 0.062 3.938 14 O -0.341 6.341 15 C 0.508 3.492 16 O -0.501 6.501 17 C -0.141 4.141 18 C -0.044 4.044 19 C -0.090 4.090 20 C -0.133 4.133 21 C 0.515 3.485 22 F -0.174 7.174 23 F -0.174 7.174 24 F -0.174 7.174 25 C -0.105 4.105 26 C 0.178 3.822 27 O -0.484 6.484 28 H 0.269 0.731 29 H -0.007 1.007 30 H -0.006 1.006 31 H 0.413 0.587 32 H 0.128 0.872 33 H 0.124 0.876 34 H 0.157 0.843 35 H 0.168 0.832 36 H 0.172 0.828 37 H 0.418 0.582 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.359 -28.717 1.835 29.469 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.568 5.568 2 C -0.196 4.196 3 Si 0.808 3.192 4 H -0.197 1.197 5 H -0.211 1.211 6 H -0.179 1.179 7 C -0.595 4.595 8 H 0.104 0.896 9 C 0.144 3.856 10 N -0.350 5.350 11 C 0.286 3.714 12 O -0.462 6.462 13 C -0.014 4.014 14 O -0.257 6.257 15 C 0.352 3.648 16 O -0.390 6.390 17 C -0.143 4.143 18 C -0.062 4.062 19 C -0.108 4.108 20 C -0.135 4.135 21 C 0.460 3.540 22 F -0.155 7.155 23 F -0.155 7.155 24 F -0.156 7.156 25 C -0.123 4.123 26 C 0.132 3.868 27 O -0.298 6.298 28 H 0.078 0.922 29 H 0.011 0.989 30 H 0.012 0.988 31 H 0.249 0.751 32 H 0.146 0.854 33 H 0.142 0.858 34 H 0.174 0.826 35 H 0.185 0.815 36 H 0.190 0.810 37 H 0.280 0.720 Dipole moment (debyes) X Y Z Total from point charges 5.666 -28.730 1.255 29.310 hybrid contribution 0.358 1.013 0.418 1.153 sum 6.025 -27.717 1.673 28.413 Atomic orbital electron populations 1.70129 1.08195 1.28599 1.49849 1.26044 0.95785 1.03845 0.93900 0.85160 0.78502 0.77046 0.78537 1.19715 1.21073 1.17921 1.21616 0.94439 0.90427 1.52984 0.89595 1.18624 0.88555 0.83741 0.94645 1.46040 1.11752 1.04739 1.72497 1.20644 0.89291 0.84657 0.76829 1.90685 1.18803 1.85279 1.51441 1.22778 0.92578 0.78715 1.07370 1.86585 1.40758 1.14360 1.83970 1.21171 0.85579 0.84848 0.73171 1.90869 1.14733 1.87877 1.45487 1.19854 0.95043 0.89692 1.09666 1.21573 0.92244 0.99558 0.92816 1.21171 1.02283 0.89832 0.97469 1.20172 0.94812 0.92533 1.05935 1.18122 0.76817 0.85085 0.73943 1.93254 1.94978 1.91538 1.35765 1.93224 1.44840 1.96190 1.81254 1.93220 1.73399 1.67885 1.81053 1.21283 0.92948 0.98724 0.99382 1.18222 0.84152 0.89638 0.94831 1.84735 1.13785 1.95664 1.35661 0.92222 0.98949 0.98841 0.75103 0.85422 0.85779 0.82556 0.81455 0.81034 0.71962 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -54.79 13.29 21.45 0.28 -54.50 16 2 C 0.00 0.22 5.46 84.66 0.46 0.68 16 3 Si 0.98 41.32 29.54 68.60 2.03 43.35 16 4 H -0.27 -11.07 7.11 99.48 0.71 -10.36 16 5 H -0.29 -11.93 7.11 99.48 0.71 -11.22 16 6 H -0.26 -9.96 7.11 99.48 0.71 -9.25 16 7 C -0.56 -29.25 9.28 25.60 0.24 -29.01 16 8 H 0.09 4.04 7.60 -2.91 -0.02 4.02 16 9 C 0.27 14.06 5.43 85.63 0.46 14.53 16 10 N -0.70 -27.79 5.55 -466.80 -2.59 -30.38 16 11 C 0.50 19.07 7.91 87.66 0.69 19.77 16 12 O -0.58 -27.90 16.50 15.76 0.26 -27.64 16 13 C 0.06 1.67 5.95 71.24 0.42 2.09 16 14 O -0.34 -9.68 9.01 -50.31 -0.45 -10.13 16 15 C 0.51 12.56 7.89 70.23 0.55 13.11 16 16 O -0.50 -13.37 14.95 26.82 0.40 -12.96 16 17 C -0.14 -2.77 5.89 -20.02 -0.12 -2.89 16 18 C -0.04 -0.75 9.61 22.53 0.22 -0.53 16 19 C -0.09 -1.19 9.37 22.24 0.21 -0.98 16 20 C -0.13 -1.72 5.46 -19.83 -0.11 -1.83 16 21 C 0.51 6.66 3.36 71.24 0.24 6.90 16 22 F -0.17 -2.42 17.30 44.97 0.78 -1.65 16 23 F -0.17 -2.45 16.44 44.97 0.74 -1.71 16 24 F -0.17 -2.35 16.44 44.97 0.74 -1.61 16 25 C -0.11 -1.31 9.32 22.34 0.21 -1.10 16 26 C 0.18 2.87 6.72 22.86 0.15 3.03 16 27 O -0.48 -7.65 11.58 -68.64 -0.79 -8.45 16 28 H 0.27 14.83 8.31 -92.71 -0.77 14.05 16 29 H -0.01 -0.44 8.14 -2.39 -0.02 -0.46 16 30 H -0.01 -0.38 8.14 -2.39 -0.02 -0.40 16 31 H 0.41 13.10 8.32 -92.70 -0.77 12.33 16 32 H 0.13 2.74 8.14 -2.39 -0.02 2.72 16 33 H 0.12 2.77 8.14 -2.39 -0.02 2.75 16 34 H 0.16 2.83 7.61 -2.91 -0.02 2.81 16 35 H 0.17 1.57 7.59 -2.91 -0.02 1.54 16 36 H 0.17 1.42 7.58 -2.91 -0.02 1.40 16 37 H 0.42 3.11 9.06 -74.06 -0.67 2.44 16 Total: -1.00 -74.31 352.18 4.77 -69.54 By element: Atomic # 1 Polarization: 12.63 SS G_CDS: -0.26 Total: 12.37 kcal Atomic # 6 Polarization: 20.13 SS G_CDS: 3.64 Total: 23.77 kcal Atomic # 7 Polarization: -82.58 SS G_CDS: -2.30 Total: -84.88 kcal Atomic # 8 Polarization: -58.59 SS G_CDS: -0.59 Total: -59.18 kcal Atomic # 9 Polarization: -7.22 SS G_CDS: 2.26 Total: -4.96 kcal Atomic # 14 Polarization: 41.32 SS G_CDS: 2.03 Total: 43.35 kcal Total: -74.31 4.77 -69.54 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000776399520.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -238.187 kcal (2) G-P(sol) polarization free energy of solvation -74.305 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -312.492 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.769 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.536 kcal (6) G-S(sol) free energy of system = (1) + (5) -307.723 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds