Wall clock time and date at job start Wed Apr 1 2020 04:07:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 S 1.81397 * 109.47607 * 2 1 4 4 O 1.42101 * 108.57700 * 65.50792 * 3 2 1 5 5 O 1.42101 * 108.57470 * 294.48684 * 3 2 1 6 6 C 1.81390 * 101.92314 * 179.97438 * 3 2 1 7 7 C 1.53008 * 109.47294 * 179.97438 * 6 3 2 8 8 N 1.46500 * 109.47488 * 179.97438 * 7 6 3 9 9 S 1.65599 * 120.00214 * 164.99885 * 8 7 6 10 10 O 1.42099 * 106.39938 * 311.46446 * 9 8 7 11 11 O 1.42092 * 106.40136 * 178.53974 * 9 8 7 12 12 C 1.76199 * 107.21588 * 64.99779 * 9 8 7 13 13 C 1.38649 * 119.87924 * 270.25539 * 12 9 8 14 14 C 1.38617 * 120.50384 * 180.30415 * 13 12 9 15 15 C 1.37641 * 120.24556 * 359.44340 * 14 13 12 16 16 C 1.40700 * 119.74456 * 0.27362 * 15 14 13 17 17 C 1.41393 * 120.24808 * 179.97438 * 16 15 14 18 18 H 1.07994 * 120.00329 * 204.39358 * 17 16 15 19 19 C 1.39942 * 119.99793 * 24.38823 * 17 16 15 20 20 N 1.30830 * 119.99921 * 17.86190 * 19 17 16 21 21 Si 1.86807 * 120.00314 * 197.85679 * 19 17 16 22 22 H 1.48504 * 109.46564 * 60.00381 * 21 19 17 23 23 H 1.48498 * 109.47182 * 180.02562 * 21 19 17 24 24 H 1.48499 * 109.46916 * 300.00498 * 21 19 17 25 25 C 1.37604 * 119.87027 * 90.00133 * 12 9 8 26 26 H 1.09001 * 109.47355 * 180.02562 * 1 2 3 27 27 H 1.09004 * 109.46793 * 300.00660 * 1 2 3 28 28 H 1.09001 * 109.46731 * 60.00103 * 1 2 3 29 29 H 1.08995 * 109.47088 * 239.99363 * 2 1 3 30 30 H 1.09007 * 109.47074 * 120.00139 * 2 1 3 31 31 H 1.08999 * 109.47666 * 59.99759 * 6 3 2 32 32 H 1.09001 * 109.47529 * 299.99746 * 6 3 2 33 33 H 1.08994 * 109.46890 * 59.99882 * 7 6 3 34 34 H 1.09001 * 109.46706 * 300.00348 * 7 6 3 35 35 H 0.96998 * 119.99788 * 345.00004 * 8 7 6 36 36 H 1.08005 * 119.75337 * 0.03997 * 13 12 9 37 37 H 1.07992 * 119.88323 * 179.71839 * 14 13 12 38 38 H 1.07998 * 120.13267 * 180.25377 * 15 14 13 39 39 H 0.97008 * 119.99884 * 179.97438 * 20 19 17 40 40 H 1.07994 * 120.13007 * 0.02562 * 25 12 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 16 2.1348 1.7102 0.0000 4 8 1.7593 2.3232 1.2258 5 8 1.7594 2.3231 -1.2258 6 6 3.9330 1.4718 0.0008 7 6 4.6282 2.8347 0.0002 8 7 6.0805 2.6422 0.0015 9 16 7.0837 3.9063 -0.3699 10 8 6.5752 4.4845 -1.5643 11 8 8.4111 3.4142 -0.2486 12 6 6.8849 5.1185 0.8933 13 6 5.9204 6.1053 0.7581 14 6 5.7571 7.0689 1.7410 15 6 6.5452 7.0490 2.8693 16 6 7.5233 6.0488 3.0200 17 6 8.3391 6.0186 4.1744 18 1 9.3080 5.5429 4.1387 19 6 7.8911 6.6051 5.3633 20 7 6.6192 6.8653 5.5256 21 14 9.1089 7.0165 6.7188 22 1 10.1177 7.9766 6.2031 23 1 8.3869 7.6246 7.8652 24 1 9.7901 5.7750 7.1657 25 6 7.6841 5.0790 2.0128 26 1 -0.3634 -1.0277 0.0005 27 1 -0.3633 0.5140 0.8900 28 1 -0.3633 0.5138 -0.8900 29 1 1.8933 -0.5139 -0.8899 30 1 1.8934 -0.5139 0.8900 31 1 4.2261 0.9145 -0.8889 32 1 4.2253 0.9148 0.8910 33 1 4.3353 3.3924 0.8897 34 1 4.3358 3.3913 -0.8902 35 1 6.4545 1.7743 0.2199 36 1 5.2943 6.1258 -0.1218 37 1 5.0058 7.8357 1.6233 38 1 6.4137 7.7983 3.6358 39 1 6.3086 7.2716 6.3499 40 1 8.4322 4.3073 2.1179 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000795095398.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:07:55 Heat of formation + Delta-G solvation = -161.057699 kcal Electronic energy + Delta-G solvation = -25945.499113 eV Core-core repulsion = 21978.073135 eV Total energy + Delta-G solvation = -3967.425978 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 347.074 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -39.46465 -38.34890 -37.99448 -37.19987 -36.97601 -36.90731 -35.68138 -33.96186 -31.93215 -31.61576 -31.30911 -27.36275 -25.54715 -23.84586 -23.65683 -22.80899 -20.81257 -19.89033 -19.62647 -18.63274 -18.00985 -17.76102 -17.30058 -17.16070 -16.81410 -16.65513 -16.56056 -15.94567 -15.85640 -15.25367 -15.10132 -15.05518 -14.32097 -14.02230 -13.84917 -13.74445 -13.36132 -13.34231 -13.29414 -13.15846 -13.12202 -13.07104 -13.05180 -13.01434 -12.93634 -12.82030 -12.60675 -12.31426 -12.22476 -11.85800 -11.58424 -11.40246 -11.22687 -11.14585 -10.60505 -9.87779 -9.58388 -8.73876 -6.46358 -1.04376 -0.51484 0.37653 0.83035 1.37126 1.46464 1.50246 1.84125 2.05898 2.16918 2.52783 2.68246 2.73630 3.11156 3.36325 3.45916 3.53723 3.80642 3.82015 4.02090 4.26555 4.27818 4.36851 4.42075 4.46635 4.55305 4.79400 4.82576 4.87352 4.88882 4.91892 5.05054 5.17191 5.18948 5.39506 5.53759 5.87237 5.92294 6.06039 6.08831 6.50904 6.78481 6.82945 8.23760 Molecular weight = 347.07amu Principal moments of inertia in cm(-1) A = 0.012553 B = 0.003090 C = 0.002731 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2229.966940 B = 9058.490361 C =10249.889856 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C -0.583 4.583 3 S 2.407 3.593 4 O -0.982 6.982 5 O -0.978 6.978 6 C -0.616 4.616 7 C 0.108 3.892 8 N -1.096 6.096 9 S 2.719 3.281 10 O -0.984 6.984 11 O -0.987 6.987 12 C -0.642 4.642 13 C -0.155 4.155 14 C -0.123 4.123 15 C -0.143 4.143 16 C 0.062 3.938 17 C -0.497 4.497 18 H 0.081 0.919 19 C 0.037 3.963 20 N -0.821 5.821 21 Si 0.984 3.016 22 H -0.262 1.262 23 H -0.266 1.266 24 H -0.258 1.258 25 C -0.143 4.143 26 H 0.105 0.895 27 H 0.065 0.935 28 H 0.068 0.932 29 H 0.168 0.832 30 H 0.165 0.835 31 H 0.179 0.821 32 H 0.175 0.825 33 H 0.074 0.926 34 H 0.091 0.909 35 H 0.434 0.566 36 H 0.130 0.870 37 H 0.125 0.875 38 H 0.114 0.886 39 H 0.292 0.708 40 H 0.115 0.885 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.269 -16.142 -6.781 19.811 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.223 4.223 2 C -0.716 4.716 3 S 2.594 3.406 4 O -0.979 6.979 5 O -0.975 6.975 6 C -0.746 4.746 7 C -0.020 4.020 8 N -0.859 5.859 9 S 2.811 3.189 10 O -0.974 6.974 11 O -0.977 6.977 12 C -0.731 4.731 13 C -0.176 4.176 14 C -0.142 4.142 15 C -0.162 4.162 16 C 0.059 3.941 17 C -0.526 4.526 18 H 0.099 0.901 19 C -0.179 4.179 20 N -0.446 5.446 21 Si 0.805 3.195 22 H -0.186 1.186 23 H -0.190 1.190 24 H -0.182 1.182 25 C -0.164 4.164 26 H 0.124 0.876 27 H 0.084 0.916 28 H 0.087 0.913 29 H 0.186 0.814 30 H 0.183 0.817 31 H 0.197 0.803 32 H 0.193 0.807 33 H 0.092 0.908 34 H 0.109 0.891 35 H 0.272 0.728 36 H 0.148 0.852 37 H 0.143 0.857 38 H 0.132 0.868 39 H 0.103 0.897 40 H 0.133 0.867 Dipole moment (debyes) X Y Z Total from point charges -9.454 -15.012 -7.391 19.218 hybrid contribution 0.770 -0.103 1.544 1.729 sum -8.684 -15.115 -5.846 18.386 Atomic orbital electron populations 1.21715 0.91007 1.06195 1.03401 1.29985 1.06799 1.19824 1.14997 1.08168 0.78299 0.80412 0.73770 1.93574 1.81720 1.75724 1.46917 1.93555 1.81654 1.75641 1.46621 1.30567 1.23228 1.04720 1.16088 1.21124 0.79973 0.96968 1.03889 1.55094 1.15463 1.26822 1.88569 1.00823 0.72047 0.72802 0.73221 1.93509 1.80897 1.78446 1.44575 1.93514 1.36447 1.80300 1.87462 1.30274 1.08273 1.17978 1.16536 1.20491 0.99761 0.97334 1.00028 1.21152 0.99619 0.99170 0.94300 1.21662 0.98551 0.98795 0.97223 1.18061 0.92580 0.90544 0.92936 1.19848 1.03650 1.34127 0.94945 0.90063 1.26774 0.97144 0.92140 1.01819 1.69821 1.16109 1.30884 1.27775 0.85211 0.78368 0.79712 0.76234 1.18606 1.19004 1.18183 1.20884 1.00803 0.99815 0.94929 0.87589 0.91616 0.91275 0.81374 0.81737 0.80289 0.80712 0.90780 0.89063 0.72824 0.85185 0.85708 0.86848 0.89683 0.86676 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.46 9.92 71.98 0.71 -0.75 16 2 C -0.58 -3.28 6.52 71.98 0.47 -2.81 16 3 S 2.41 39.45 4.72 -56.49 -0.27 39.18 16 4 O -0.98 -25.98 18.10 -127.37 -2.30 -28.28 16 5 O -0.98 -23.97 18.10 -127.37 -2.31 -26.28 16 6 C -0.62 -7.38 5.95 71.98 0.43 -6.95 16 7 C 0.11 2.56 6.23 86.38 0.54 3.09 16 8 N -1.10 -27.60 6.00 -187.48 -1.12 -28.73 16 9 S 2.72 97.10 5.73 -56.49 -0.32 96.77 16 10 O -0.98 -38.32 16.74 -128.00 -2.14 -40.47 16 11 O -0.99 -39.21 17.26 -128.00 -2.21 -41.42 16 12 C -0.64 -28.05 5.94 22.22 0.13 -27.91 16 13 C -0.16 -6.79 9.53 22.46 0.21 -6.57 16 14 C -0.12 -5.67 10.02 22.22 0.22 -5.45 16 15 C -0.14 -7.38 8.70 22.73 0.20 -7.19 16 16 C 0.06 3.32 5.58 -21.29 -0.12 3.20 16 17 C -0.50 -26.27 9.05 23.46 0.21 -26.05 16 18 H 0.08 4.13 7.91 -2.91 -0.02 4.11 16 19 C 0.04 1.82 5.14 85.25 0.44 2.25 16 20 N -0.82 -41.48 10.95 21.83 0.24 -41.25 16 21 Si 0.98 37.08 29.60 68.60 2.03 39.11 16 22 H -0.26 -9.75 7.11 99.48 0.71 -9.05 16 23 H -0.27 -9.42 7.11 99.48 0.71 -8.71 16 24 H -0.26 -9.38 7.11 99.48 0.71 -8.67 16 25 C -0.14 -7.01 9.26 22.73 0.21 -6.80 16 26 H 0.11 0.46 8.14 -2.39 -0.02 0.44 16 27 H 0.06 0.71 8.14 -2.39 -0.02 0.69 16 28 H 0.07 0.69 8.14 -2.39 -0.02 0.67 16 29 H 0.17 -0.13 8.14 -2.39 -0.02 -0.15 16 30 H 0.16 0.03 8.14 -2.39 -0.02 0.01 16 31 H 0.18 0.76 8.14 -2.39 -0.02 0.75 16 32 H 0.18 0.94 8.14 -2.39 -0.02 0.92 16 33 H 0.07 1.96 8.14 -2.39 -0.02 1.94 16 34 H 0.09 2.23 7.75 -2.39 -0.02 2.21 16 35 H 0.43 7.73 8.65 -96.75 -0.84 6.89 16 36 H 0.13 5.00 7.61 -2.91 -0.02 4.98 16 37 H 0.12 4.94 8.06 -2.91 -0.02 4.92 16 38 H 0.11 6.02 6.15 -2.91 -0.02 6.00 16 39 H 0.29 13.32 8.30 -92.70 -0.77 12.56 16 40 H 0.12 5.37 7.60 -2.91 -0.02 5.35 16 Total: -1.00 -82.91 367.52 -4.52 -87.43 By element: Atomic # 1 Polarization: 25.62 SS G_CDS: 0.23 Total: 25.85 kcal Atomic # 6 Polarization: -85.59 SS G_CDS: 3.66 Total: -81.93 kcal Atomic # 7 Polarization: -69.09 SS G_CDS: -0.89 Total: -69.97 kcal Atomic # 8 Polarization: -127.49 SS G_CDS: -8.96 Total: -136.45 kcal Atomic # 14 Polarization: 37.08 SS G_CDS: 2.03 Total: 39.11 kcal Atomic # 16 Polarization: 136.55 SS G_CDS: -0.59 Total: 135.96 kcal Total: -82.91 -4.52 -87.43 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000795095398.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -73.629 kcal (2) G-P(sol) polarization free energy of solvation -82.911 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -156.540 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.518 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -87.428 kcal (6) G-S(sol) free energy of system = (1) + (5) -161.058 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds