Wall clock time and date at job start Wed Apr 1 2020 04:39:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86807 * 119.99678 * 2 1 4 4 H 1.48500 * 109.46764 * 179.97438 * 3 2 1 5 5 H 1.48496 * 109.46773 * 299.99312 * 3 2 1 6 6 H 1.48491 * 109.47465 * 59.99833 * 3 2 1 7 7 C 1.37877 * 120.00620 * 179.97438 * 2 1 3 8 8 H 1.07995 * 120.00322 * 180.02562 * 7 2 1 9 9 C 1.50701 * 119.99414 * 0.02562 * 7 2 1 10 10 N 1.46507 * 109.46742 * 179.97438 * 9 7 2 11 11 C 1.34777 * 119.99523 * 179.97438 * 10 9 7 12 12 O 1.21283 * 120.00436 * 0.02562 * 11 10 9 13 13 C 1.50704 * 119.99591 * 179.97438 * 11 10 9 14 14 O 1.45208 * 109.46856 * 179.97438 * 13 11 10 15 15 C 1.34704 * 116.99602 * 179.97438 * 14 13 11 16 16 O 1.21472 * 120.00524 * 0.02562 * 15 14 13 17 17 C 1.47742 * 119.99889 * 180.02562 * 15 14 13 18 18 C 1.39580 * 120.12237 * 0.02562 * 17 15 14 19 19 C 1.38440 * 119.78902 * 180.02562 * 18 17 15 20 20 O 1.35909 * 119.98216 * 179.97438 * 19 18 17 21 21 C 1.38867 * 120.03435 * 0.02562 * 19 18 17 22 22 C 1.38251 * 120.24970 * 0.25262 * 21 19 18 23 23 C 1.37993 * 120.21259 * 359.44718 * 22 21 19 24 24 C 1.50702 * 120.02169 * 180.25426 * 23 22 21 25 25 F 1.39897 * 109.46879 * 0.31932 * 24 23 22 26 26 F 1.39901 * 109.46782 * 120.31687 * 24 23 22 27 27 F 1.39892 * 109.47120 * 240.31694 * 24 23 22 28 28 H 0.96989 * 120.00288 * 0.02562 * 1 2 3 29 29 H 1.09004 * 109.47603 * 60.00331 * 9 7 2 30 30 H 1.08997 * 109.47536 * 299.99347 * 9 7 2 31 31 H 0.96993 * 120.00501 * 359.97438 * 10 9 7 32 32 H 1.09001 * 109.46620 * 60.00777 * 13 11 10 33 33 H 1.08999 * 109.47662 * 300.00225 * 13 11 10 34 34 H 1.07994 * 120.10235 * 0.04385 * 18 17 15 35 35 H 0.96703 * 113.99791 * 270.02277 * 20 19 18 36 36 H 1.08002 * 119.87093 * 179.97438 * 21 19 18 37 37 H 1.07996 * 119.89089 * 179.70144 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.7091 1.3465 0.0006 5 1 1.8904 2.3964 -1.2126 6 1 1.8903 2.3966 1.2124 7 6 2.0046 -1.1940 0.0005 8 1 3.0846 -1.1939 0.0010 9 6 1.2511 -2.4991 0.0005 10 7 2.2033 -3.6126 0.0005 11 6 1.7540 -4.8833 0.0011 12 8 0.5616 -5.1050 0.0011 13 6 2.7334 -6.0287 0.0005 14 8 2.0074 -7.2862 0.0018 15 6 2.7411 -8.4159 0.0010 16 8 3.9542 -8.3523 -0.0004 17 6 2.0705 -9.7323 0.0017 18 6 0.6767 -9.8085 0.0027 19 6 0.0555 -11.0456 0.0039 20 8 -1.3013 -11.1243 0.0054 21 6 0.8180 -12.2063 0.0046 22 6 2.1985 -12.1326 0.0094 23 6 2.8284 -10.9049 0.0020 24 6 4.3336 -10.8297 0.0015 25 9 4.8651 -12.1238 0.0019 26 9 4.7660 -10.1483 -1.1413 27 9 4.7668 -10.1472 1.1432 28 1 -0.4850 0.8399 -0.0004 29 1 0.6248 -2.5571 -0.8897 30 1 0.6242 -2.5568 0.8903 31 1 3.1569 -3.4354 0.0002 32 1 3.3606 -5.9708 0.8901 33 1 3.3594 -5.9711 -0.8899 34 1 0.0850 -8.9051 0.0022 35 1 -1.6930 -11.1464 0.8892 36 1 0.3306 -13.1700 0.0059 37 1 2.7858 -13.0389 0.0148 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000803528711.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:39:40 Heat of formation + Delta-G solvation = -279.594583 kcal Electronic energy + Delta-G solvation = -29861.683819 eV Core-core repulsion = 24769.064133 eV Total energy + Delta-G solvation = -5092.619686 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 347.086 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -50.23952 -47.81606 -47.58076 -41.10397 -39.99018 -38.77093 -37.42023 -36.45332 -34.29821 -32.47184 -32.27124 -31.48340 -29.28650 -26.93166 -26.10357 -24.69479 -22.93730 -22.44322 -21.49030 -20.01864 -19.26497 -18.71969 -18.52703 -18.48646 -17.80334 -17.49706 -16.81626 -16.48581 -16.03171 -15.74717 -15.49450 -15.16743 -14.96911 -14.88934 -14.52701 -14.46824 -14.25987 -14.05823 -13.93700 -13.77317 -13.73402 -13.26401 -13.12720 -12.88265 -12.75313 -12.63454 -12.05699 -12.01430 -11.82347 -11.47909 -11.01402 -10.97294 -10.81148 -10.78400 -10.37137 -9.81323 -9.57966 -9.45312 -9.25144 -8.81786 -8.03563 -6.22350 -4.29754 -0.14727 0.38891 2.01933 2.08469 2.40778 2.87193 3.11318 3.20924 3.28267 3.31197 3.38817 3.54458 3.71684 3.86605 4.22082 4.26461 4.27323 4.34377 4.54970 4.69389 4.77282 5.02826 5.13727 5.16888 5.19631 5.24096 5.27864 5.44530 5.61856 5.86839 6.07304 7.02107 7.17837 7.24427 7.37917 7.42006 7.58384 7.88758 8.45010 8.67162 8.91240 9.36837 10.87836 Molecular weight = 347.09amu Principal moments of inertia in cm(-1) A = 0.017363 B = 0.002254 C = 0.002022 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1612.248384 B =12417.659255 C =13842.267638 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.885 5.885 2 C 0.064 3.936 3 Si 0.905 3.095 4 H -0.271 1.271 5 H -0.282 1.282 6 H -0.282 1.282 7 C -0.545 4.545 8 H 0.065 0.935 9 C 0.251 3.749 10 N -0.705 5.705 11 C 0.500 3.500 12 O -0.535 6.535 13 C 0.050 3.950 14 O -0.318 6.318 15 C 0.498 3.502 16 O -0.484 6.484 17 C -0.056 4.056 18 C -0.086 4.086 19 C 0.131 3.869 20 O -0.490 6.490 21 C -0.116 4.116 22 C -0.067 4.067 23 C -0.139 4.139 24 C 0.516 3.484 25 F -0.183 7.183 26 F -0.163 7.163 27 F -0.164 7.164 28 H 0.266 0.734 29 H 0.030 0.970 30 H 0.030 0.970 31 H 0.394 0.606 32 H 0.101 0.899 33 H 0.101 0.899 34 H 0.164 0.836 35 H 0.401 0.599 36 H 0.149 0.851 37 H 0.153 0.847 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.463 -27.776 1.727 28.185 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.522 5.522 2 C -0.140 4.140 3 Si 0.732 3.268 4 H -0.196 1.196 5 H -0.207 1.207 6 H -0.208 1.208 7 C -0.583 4.583 8 H 0.083 0.917 9 C 0.131 3.869 10 N -0.355 5.355 11 C 0.283 3.717 12 O -0.412 6.412 13 C -0.028 4.028 14 O -0.233 6.233 15 C 0.341 3.659 16 O -0.372 6.372 17 C -0.057 4.057 18 C -0.105 4.105 19 C 0.086 3.914 20 O -0.301 6.301 21 C -0.134 4.134 22 C -0.085 4.085 23 C -0.141 4.141 24 C 0.461 3.539 25 F -0.164 7.164 26 F -0.144 7.144 27 F -0.145 7.145 28 H 0.076 0.924 29 H 0.048 0.952 30 H 0.048 0.952 31 H 0.227 0.773 32 H 0.119 0.881 33 H 0.119 0.881 34 H 0.181 0.819 35 H 0.259 0.741 36 H 0.166 0.834 37 H 0.171 0.829 Dipole moment (debyes) X Y Z Total from point charges 3.881 -27.697 1.125 27.990 hybrid contribution 1.137 1.137 0.473 1.676 sum 5.018 -26.560 1.598 27.077 Atomic orbital electron populations 1.69974 1.06126 1.27344 1.48754 1.24953 0.94933 0.99520 0.94583 0.86335 0.79836 0.82808 0.77793 1.19585 1.20747 1.20758 1.21240 0.93384 0.90258 1.53434 0.91686 1.19196 0.88143 0.81512 0.98060 1.46367 1.11608 1.05280 1.72249 1.19833 0.89046 0.83969 0.78836 1.90708 1.16264 1.84541 1.49703 1.22974 0.94473 0.80254 1.05052 1.86562 1.39653 1.13795 1.83274 1.20952 0.85742 0.85154 0.74020 1.90951 1.14155 1.87748 1.44394 1.18651 0.93509 0.89390 1.04154 1.21971 0.92912 0.99680 0.95905 1.18503 0.83916 0.91607 0.97377 1.84850 1.15067 1.95968 1.34246 1.21714 0.93278 0.99364 0.99063 1.20873 0.94651 0.96464 0.96533 1.20122 0.92055 0.94581 1.07362 1.17862 0.87478 0.73380 0.75138 1.93153 1.88237 1.38630 1.96375 1.93250 1.91001 1.79850 1.50343 1.93245 1.91009 1.79815 1.50431 0.92401 0.95209 0.95208 0.77338 0.88093 0.88076 0.81866 0.74058 0.83353 0.82916 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -25.61 13.29 55.43 0.74 -24.87 16 2 C 0.06 1.74 5.46 -17.82 -0.10 1.65 16 3 Si 0.91 20.54 29.54 -169.99 -5.02 15.52 16 4 H -0.27 -5.97 7.11 56.52 0.40 -5.57 16 5 H -0.28 -6.36 7.11 56.52 0.40 -5.96 16 6 H -0.28 -6.36 7.11 56.52 0.40 -5.96 16 7 C -0.54 -14.43 9.28 -34.44 -0.32 -14.75 16 8 H 0.07 1.61 7.60 -52.49 -0.40 1.21 16 9 C 0.25 6.45 5.43 -5.19 -0.03 6.42 16 10 N -0.70 -14.23 5.55 -61.46 -0.34 -14.57 16 11 C 0.50 9.71 7.91 -10.98 -0.09 9.62 16 12 O -0.53 -12.59 16.50 -14.10 -0.23 -12.82 16 13 C 0.05 0.73 5.95 36.01 0.21 0.95 16 14 O -0.32 -4.83 9.01 -47.18 -0.42 -5.26 16 15 C 0.50 6.89 7.71 34.61 0.27 7.16 16 16 O -0.48 -7.33 11.08 -19.24 -0.21 -7.54 16 17 C -0.06 -0.62 5.84 -105.00 -0.61 -1.24 16 18 C -0.09 -0.83 9.56 -39.01 -0.37 -1.21 16 19 C 0.13 0.98 6.70 -39.27 -0.26 0.72 16 20 O -0.49 -3.18 13.50 -19.45 -0.26 -3.45 16 21 C -0.12 -0.67 9.98 -39.34 -0.39 -1.07 16 22 C -0.07 -0.46 9.41 -39.67 -0.37 -0.83 16 23 C -0.14 -1.39 5.40 -104.19 -0.56 -1.95 16 24 C 0.52 5.93 2.78 36.01 0.10 6.03 16 25 F -0.18 -1.80 15.97 2.25 0.04 -1.76 16 26 F -0.16 -2.18 15.01 2.25 0.03 -2.15 16 27 F -0.16 -2.15 15.01 2.25 0.03 -2.12 16 28 H 0.27 7.21 8.31 -40.82 -0.34 6.87 16 29 H 0.03 0.85 8.14 -51.93 -0.42 0.42 16 30 H 0.03 0.84 8.14 -51.93 -0.42 0.42 16 31 H 0.39 6.68 8.32 -40.82 -0.34 6.34 16 32 H 0.10 1.28 8.14 -51.93 -0.42 0.86 16 33 H 0.10 1.30 8.14 -51.93 -0.42 0.88 16 34 H 0.16 1.69 7.61 -52.49 -0.40 1.29 16 35 H 0.40 0.65 9.06 45.56 0.41 1.06 16 36 H 0.15 0.46 8.06 -52.49 -0.42 0.04 16 37 H 0.15 0.69 7.15 -52.49 -0.38 0.32 16 LS Contribution 345.83 15.07 5.21 5.21 Total: -1.00 -34.77 345.83 -5.32 -40.09 By element: Atomic # 1 Polarization: 4.57 SS G_CDS: -2.35 Total: 2.22 kcal Atomic # 6 Polarization: 14.02 SS G_CDS: -2.53 Total: 11.49 kcal Atomic # 7 Polarization: -39.84 SS G_CDS: 0.40 Total: -39.44 kcal Atomic # 8 Polarization: -27.93 SS G_CDS: -1.13 Total: -29.07 kcal Atomic # 9 Polarization: -6.13 SS G_CDS: 0.10 Total: -6.02 kcal Atomic # 14 Polarization: 20.54 SS G_CDS: -5.02 Total: 15.52 kcal Total LS contribution 5.21 Total: 5.21 kcal Total: -34.77 -5.32 -40.09 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000803528711.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -239.501 kcal (2) G-P(sol) polarization free energy of solvation -34.773 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -274.274 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.321 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.094 kcal (6) G-S(sol) free energy of system = (1) + (5) -279.595 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds