Wall clock time and date at job start Wed Apr 1 2020 04:39:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86807 * 119.99678 * 2 1 4 4 H 1.48500 * 109.46764 * 179.97438 * 3 2 1 5 5 H 1.48496 * 109.46773 * 299.99312 * 3 2 1 6 6 H 1.48491 * 109.47465 * 59.99833 * 3 2 1 7 7 C 1.37877 * 120.00620 * 179.97438 * 2 1 3 8 8 H 1.07995 * 120.00322 * 180.02562 * 7 2 1 9 9 C 1.50701 * 119.99414 * 0.02562 * 7 2 1 10 10 N 1.46507 * 109.46742 * 179.97438 * 9 7 2 11 11 C 1.34777 * 119.99523 * 179.97438 * 10 9 7 12 12 O 1.21283 * 120.00436 * 0.02562 * 11 10 9 13 13 C 1.50704 * 119.99591 * 179.97438 * 11 10 9 14 14 O 1.45208 * 109.46856 * 179.97438 * 13 11 10 15 15 C 1.34704 * 116.99602 * 179.97438 * 14 13 11 16 16 O 1.21472 * 120.00524 * 0.02562 * 15 14 13 17 17 C 1.47742 * 119.99889 * 180.02562 * 15 14 13 18 18 C 1.39580 * 120.12237 * 0.02562 * 17 15 14 19 19 C 1.38440 * 119.78902 * 180.02562 * 18 17 15 20 20 O 1.35909 * 119.98216 * 179.97438 * 19 18 17 21 21 C 1.38867 * 120.03435 * 0.02562 * 19 18 17 22 22 C 1.38251 * 120.24970 * 0.25262 * 21 19 18 23 23 C 1.37993 * 120.21259 * 359.44718 * 22 21 19 24 24 C 1.50702 * 120.02169 * 180.25426 * 23 22 21 25 25 F 1.39897 * 109.46879 * 0.31932 * 24 23 22 26 26 F 1.39901 * 109.46782 * 120.31687 * 24 23 22 27 27 F 1.39892 * 109.47120 * 240.31694 * 24 23 22 28 28 H 0.96989 * 120.00288 * 0.02562 * 1 2 3 29 29 H 1.09004 * 109.47603 * 60.00331 * 9 7 2 30 30 H 1.08997 * 109.47536 * 299.99347 * 9 7 2 31 31 H 0.96993 * 120.00501 * 359.97438 * 10 9 7 32 32 H 1.09001 * 109.46620 * 60.00777 * 13 11 10 33 33 H 1.08999 * 109.47662 * 300.00225 * 13 11 10 34 34 H 1.07994 * 120.10235 * 0.04385 * 18 17 15 35 35 H 0.96703 * 113.99791 * 270.02277 * 20 19 18 36 36 H 1.08002 * 119.87093 * 179.97438 * 21 19 18 37 37 H 1.07996 * 119.89089 * 179.70144 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.7091 1.3465 0.0006 5 1 1.8904 2.3964 -1.2126 6 1 1.8903 2.3966 1.2124 7 6 2.0046 -1.1940 0.0005 8 1 3.0846 -1.1939 0.0010 9 6 1.2511 -2.4991 0.0005 10 7 2.2033 -3.6126 0.0005 11 6 1.7540 -4.8833 0.0011 12 8 0.5616 -5.1050 0.0011 13 6 2.7334 -6.0287 0.0005 14 8 2.0074 -7.2862 0.0018 15 6 2.7411 -8.4159 0.0010 16 8 3.9542 -8.3523 -0.0004 17 6 2.0705 -9.7323 0.0017 18 6 0.6767 -9.8085 0.0027 19 6 0.0555 -11.0456 0.0039 20 8 -1.3013 -11.1243 0.0054 21 6 0.8180 -12.2063 0.0046 22 6 2.1985 -12.1326 0.0094 23 6 2.8284 -10.9049 0.0020 24 6 4.3336 -10.8297 0.0015 25 9 4.8651 -12.1238 0.0019 26 9 4.7660 -10.1483 -1.1413 27 9 4.7668 -10.1472 1.1432 28 1 -0.4850 0.8399 -0.0004 29 1 0.6248 -2.5571 -0.8897 30 1 0.6242 -2.5568 0.8903 31 1 3.1569 -3.4354 0.0002 32 1 3.3606 -5.9708 0.8901 33 1 3.3594 -5.9711 -0.8899 34 1 0.0850 -8.9051 0.0022 35 1 -1.6930 -11.1464 0.8892 36 1 0.3306 -13.1700 0.0059 37 1 2.7858 -13.0389 0.0148 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000803528711.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:39:39 Heat of formation + Delta-G solvation = -304.836848 kcal Electronic energy + Delta-G solvation = -29862.778406 eV Core-core repulsion = 24769.064133 eV Total energy + Delta-G solvation = -5093.714273 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 347.086 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -51.11930 -48.66989 -48.52646 -42.07162 -40.87743 -40.26168 -38.13813 -37.50893 -36.20410 -34.43453 -33.00166 -32.14820 -30.80199 -28.63151 -26.99833 -25.53765 -24.59438 -23.43609 -22.37889 -21.68648 -20.11428 -19.44272 -19.41661 -19.39114 -19.07120 -18.78174 -17.97579 -17.81054 -17.14878 -17.00831 -16.65899 -16.37675 -16.20013 -16.01384 -15.65187 -15.45960 -15.35312 -15.03514 -14.81518 -14.72699 -14.64284 -14.53583 -14.40859 -14.12846 -13.86762 -13.79580 -13.49082 -13.43006 -12.92603 -12.82718 -12.76638 -12.24783 -12.23616 -12.01135 -11.62043 -11.47961 -10.95394 -10.84091 -10.45193 -10.19552 -9.95095 -8.30753 -6.47036 -0.87145 -0.22948 0.99781 1.15889 1.44113 1.44257 1.51737 1.57870 1.59256 2.17671 2.29554 2.47565 2.63884 2.94805 2.99808 3.04752 3.38716 3.41150 3.58277 3.67071 3.91782 3.98203 4.00465 4.04114 4.17696 4.61332 4.62773 4.82718 4.94887 5.06488 5.08823 5.20976 5.33907 5.40100 5.61130 5.81107 6.29846 6.61812 6.71035 6.74803 7.18699 7.33105 8.81586 Molecular weight = 347.09amu Principal moments of inertia in cm(-1) A = 0.017363 B = 0.002254 C = 0.002022 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1612.248384 B =12417.659255 C =13842.267638 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.930 5.930 2 C 0.005 3.995 3 Si 0.984 3.016 4 H -0.254 1.254 5 H -0.279 1.279 6 H -0.279 1.279 7 C -0.556 4.556 8 H 0.085 0.915 9 C 0.267 3.733 10 N -0.698 5.698 11 C 0.501 3.499 12 O -0.581 6.581 13 C 0.061 3.939 14 O -0.335 6.335 15 C 0.498 3.502 16 O -0.502 6.502 17 C -0.077 4.077 18 C -0.097 4.097 19 C 0.138 3.862 20 O -0.499 6.499 21 C -0.094 4.094 22 C -0.055 4.055 23 C -0.150 4.150 24 C 0.512 3.488 25 F -0.172 7.172 26 F -0.178 7.178 27 F -0.177 7.177 28 H 0.269 0.731 29 H -0.007 1.007 30 H -0.006 1.006 31 H 0.413 0.587 32 H 0.127 0.873 33 H 0.126 0.874 34 H 0.147 0.853 35 H 0.423 0.577 36 H 0.187 0.813 37 H 0.182 0.818 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.720 -29.629 1.842 30.233 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.568 5.568 2 C -0.195 4.195 3 Si 0.807 3.193 4 H -0.177 1.177 5 H -0.205 1.205 6 H -0.205 1.205 7 C -0.594 4.594 8 H 0.103 0.897 9 C 0.144 3.856 10 N -0.349 5.349 11 C 0.287 3.713 12 O -0.461 6.461 13 C -0.016 4.016 14 O -0.250 6.250 15 C 0.343 3.657 16 O -0.391 6.391 17 C -0.079 4.079 18 C -0.116 4.116 19 C 0.093 3.907 20 O -0.314 6.314 21 C -0.112 4.112 22 C -0.072 4.072 23 C -0.152 4.152 24 C 0.458 3.542 25 F -0.154 7.154 26 F -0.160 7.160 27 F -0.159 7.159 28 H 0.078 0.922 29 H 0.011 0.989 30 H 0.012 0.988 31 H 0.249 0.751 32 H 0.145 0.855 33 H 0.144 0.856 34 H 0.165 0.835 35 H 0.285 0.715 36 H 0.205 0.795 37 H 0.199 0.801 Dipole moment (debyes) X Y Z Total from point charges 5.178 -29.582 1.257 30.058 hybrid contribution 0.645 1.562 0.447 1.748 sum 5.823 -28.021 1.703 28.670 Atomic orbital electron populations 1.70126 1.08203 1.28578 1.49921 1.26034 0.95773 1.03821 0.93863 0.85118 0.79085 0.77403 0.77662 1.17713 1.20504 1.20472 1.21634 0.94412 0.90400 1.52911 0.89655 1.18645 0.88537 0.83704 0.94686 1.46038 1.11782 1.04675 1.72426 1.20581 0.89214 0.84634 0.76882 1.90684 1.18735 1.85265 1.51461 1.22827 0.92691 0.78594 1.07453 1.86557 1.40458 1.14281 1.83711 1.21427 0.85669 0.85414 0.73202 1.90930 1.14776 1.87920 1.45517 1.18561 0.94107 0.88359 1.06830 1.21903 0.92306 1.00398 0.96957 1.18551 0.84490 0.91254 0.96412 1.84805 1.14476 1.95820 1.36282 1.22075 0.92637 1.00190 0.96275 1.21238 0.95313 0.96031 0.94655 1.20128 0.90876 0.95338 1.08842 1.18081 0.88480 0.73407 0.74243 1.93163 1.88256 1.37673 1.96275 1.93212 1.91306 1.80333 1.51123 1.93210 1.91297 1.80263 1.51106 0.92183 0.98885 0.98802 0.75105 0.85502 0.85633 0.83489 0.71532 0.79540 0.80124 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -55.28 13.29 21.45 0.28 -55.00 16 2 C 0.00 0.27 5.46 84.65 0.46 0.73 16 3 Si 0.98 41.84 29.54 68.60 2.03 43.87 16 4 H -0.25 -9.98 7.11 99.48 0.71 -9.28 16 5 H -0.28 -11.71 7.11 99.48 0.71 -11.01 16 6 H -0.28 -11.68 7.11 99.48 0.71 -10.97 16 7 C -0.56 -29.61 9.28 25.60 0.24 -29.37 16 8 H 0.09 4.10 7.60 -2.91 -0.02 4.08 16 9 C 0.27 14.28 5.43 85.63 0.46 14.75 16 10 N -0.70 -28.61 5.55 -466.76 -2.59 -31.20 16 11 C 0.50 19.89 7.91 87.66 0.69 20.59 16 12 O -0.58 -28.67 16.50 15.76 0.26 -28.41 16 13 C 0.06 1.77 5.95 71.24 0.42 2.19 16 14 O -0.33 -10.36 9.01 -49.76 -0.45 -10.80 16 15 C 0.50 13.92 7.71 70.33 0.54 14.46 16 16 O -0.50 -15.20 11.08 19.93 0.22 -14.98 16 17 C -0.08 -1.72 5.84 -20.11 -0.12 -1.84 16 18 C -0.10 -1.85 9.56 22.64 0.22 -1.63 16 19 C 0.14 1.77 6.70 22.47 0.15 1.92 16 20 O -0.50 -5.32 13.50 -92.52 -1.25 -6.57 16 21 C -0.09 -0.73 9.98 22.42 0.22 -0.51 16 22 C -0.05 -0.57 9.41 22.21 0.21 -0.36 16 23 C -0.15 -2.79 5.40 -19.59 -0.11 -2.90 16 24 C 0.51 11.36 2.78 71.24 0.20 11.56 16 25 F -0.17 -3.10 15.97 44.97 0.72 -2.38 16 26 F -0.18 -4.74 15.01 44.97 0.67 -4.07 16 27 F -0.18 -4.62 15.01 44.97 0.68 -3.95 16 28 H 0.27 14.91 8.31 -92.72 -0.77 14.14 16 29 H -0.01 -0.41 8.14 -2.39 -0.02 -0.43 16 30 H -0.01 -0.36 8.14 -2.39 -0.02 -0.38 16 31 H 0.41 13.66 8.32 -92.71 -0.77 12.89 16 32 H 0.13 3.06 8.14 -2.39 -0.02 3.04 16 33 H 0.13 3.07 8.14 -2.39 -0.02 3.05 16 34 H 0.15 3.22 7.61 -2.91 -0.02 3.20 16 35 H 0.42 0.34 9.06 -74.06 -0.67 -0.33 16 36 H 0.19 0.10 8.06 -2.91 -0.02 0.08 16 37 H 0.18 0.86 7.15 -2.91 -0.02 0.84 16 Total: -1.00 -78.88 345.83 3.91 -74.97 By element: Atomic # 1 Polarization: 9.18 SS G_CDS: -0.26 Total: 8.92 kcal Atomic # 6 Polarization: 25.99 SS G_CDS: 3.60 Total: 29.59 kcal Atomic # 7 Polarization: -83.89 SS G_CDS: -2.30 Total: -86.19 kcal Atomic # 8 Polarization: -59.55 SS G_CDS: -1.22 Total: -60.77 kcal Atomic # 9 Polarization: -12.46 SS G_CDS: 2.07 Total: -10.39 kcal Atomic # 14 Polarization: 41.84 SS G_CDS: 2.03 Total: 43.87 kcal Total: -78.88 3.91 -74.97 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000803528711.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -229.867 kcal (2) G-P(sol) polarization free energy of solvation -78.883 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -308.749 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.913 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.970 kcal (6) G-S(sol) free energy of system = (1) + (5) -304.837 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds