Wall clock time and date at job start Wed Apr 1 2020 04:22:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31413 * 1 3 3 Si 1.86802 * 119.99798 * 2 1 4 4 H 1.48499 * 109.46779 * 239.99472 * 3 2 1 5 5 H 1.48496 * 109.47370 * 359.97438 * 3 2 1 6 6 H 1.48498 * 109.47169 * 119.99962 * 3 2 1 7 7 C 1.38950 * 119.99939 * 179.97438 * 2 1 3 8 8 H 1.08007 * 119.99645 * 180.02562 * 7 2 1 9 9 N 1.37096 * 120.00274 * 0.02562 * 7 2 1 10 10 C 1.34781 * 120.00019 * 179.97438 * 9 7 2 11 11 O 1.21290 * 120.00130 * 359.97438 * 10 9 7 12 12 C 1.50699 * 119.99958 * 180.02562 * 10 9 7 13 13 O 1.45194 * 109.47064 * 180.02562 * 12 10 9 14 14 C 1.34233 * 116.99969 * 180.02562 * 13 12 10 15 15 O 1.20829 * 119.99885 * 359.97438 * 14 13 12 16 16 C 1.50699 * 120.00100 * 180.02562 * 14 13 12 17 17 H 1.09002 * 109.46959 * 304.99647 * 16 14 13 18 18 O 1.42898 * 109.46964 * 184.99677 * 16 14 13 19 19 C 1.50703 * 109.47227 * 64.99649 * 16 14 13 20 20 C 1.38258 * 119.99785 * 84.72730 * 19 16 14 21 21 C 1.38220 * 119.99829 * 179.76856 * 20 19 16 22 22 C 1.38256 * 119.99642 * 0.50685 * 21 20 19 23 23 C 1.38217 * 120.00330 * 359.74394 * 22 21 20 24 24 C 1.50697 * 119.99930 * 179.97438 * 23 22 21 25 25 F 1.39899 * 109.46763 * 270.02153 * 24 23 22 26 26 F 1.39898 * 109.47374 * 30.02398 * 24 23 22 27 27 F 1.39901 * 109.46997 * 150.02737 * 24 23 22 28 28 C 1.38206 * 119.99906 * 265.00235 * 19 16 14 29 29 H 0.97001 * 119.99941 * 0.02562 * 1 2 3 30 30 H 0.96994 * 120.00000 * 0.02562 * 9 7 2 31 31 H 1.09004 * 109.47371 * 59.99758 * 12 10 9 32 32 H 1.09001 * 109.46972 * 300.00200 * 12 10 9 33 33 H 0.96698 * 113.99898 * 299.99550 * 18 16 14 34 34 H 1.07996 * 120.00218 * 359.97438 * 20 19 16 35 35 H 1.07991 * 120.00147 * 180.23034 * 21 20 19 36 36 H 1.08005 * 119.99628 * 179.72894 * 22 21 20 37 37 H 1.07999 * 120.00496 * 359.97438 * 28 19 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2481 1.6178 0.0000 4 1 3.1019 1.6963 -1.2125 5 1 1.2831 2.7465 -0.0006 6 1 3.1018 1.6965 1.2125 7 6 2.0089 -1.2033 0.0005 8 1 3.0889 -1.2033 0.0010 9 7 1.3234 -2.3907 0.0005 10 6 1.9974 -3.5579 0.0005 11 8 3.2103 -3.5579 0.0001 12 6 1.2439 -4.8630 0.0000 13 8 2.1875 -5.9665 0.0007 14 6 1.6744 -7.2070 -0.0002 15 8 0.4766 -7.3653 -0.0012 16 6 2.5925 -8.4021 0.0010 17 1 3.2825 -8.3310 -0.8398 18 8 1.8184 -9.5974 -0.1177 19 6 3.3728 -8.4348 1.2899 20 6 2.8220 -9.0164 2.4168 21 6 3.5396 -9.0507 3.5976 22 6 4.8039 -8.4940 3.6546 23 6 5.3524 -7.9080 2.5294 24 6 6.7302 -7.3008 2.5917 25 9 6.6302 -5.9544 2.9584 26 9 7.4994 -7.9860 3.5382 27 9 7.3399 -7.3981 1.3363 28 6 4.6366 -7.8783 1.3468 29 1 -0.4850 0.8401 -0.0004 30 1 0.3535 -2.3907 -0.0002 31 1 0.6175 -4.9206 -0.8903 32 1 0.6169 -4.9209 0.8897 33 1 1.1814 -9.7261 0.5984 34 1 1.8325 -9.4469 2.3736 35 1 3.1110 -9.5082 4.4769 36 1 5.3628 -8.5169 4.5785 37 1 5.0652 -7.4204 0.4676 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000803812284.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:22:54 Heat of formation + Delta-G solvation = -291.396000 kcal Electronic energy + Delta-G solvation = -30127.391985 eV Core-core repulsion = 25034.260551 eV Total energy + Delta-G solvation = -5093.131434 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 347.086 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -50.26811 -47.81383 -47.68660 -40.99803 -39.70351 -38.28031 -37.22788 -36.01861 -34.03772 -32.54513 -32.13737 -31.41262 -28.98364 -27.27844 -26.30598 -24.62745 -23.02855 -22.30247 -21.09214 -19.65123 -18.87820 -18.57550 -18.54250 -18.32725 -18.11993 -17.16017 -16.74935 -16.63650 -15.95711 -15.81631 -15.59420 -14.78655 -14.61599 -14.61169 -14.33786 -14.29274 -14.11997 -14.03527 -13.88449 -13.86680 -13.85035 -13.36678 -13.28261 -12.94876 -12.61198 -12.37043 -12.21647 -12.00992 -11.64172 -11.61612 -11.35985 -11.13360 -10.54576 -10.50624 -10.46678 -10.30708 -9.62103 -9.60845 -9.31708 -8.56440 -8.11176 -6.52447 -3.94611 0.50808 0.78026 2.00637 2.42013 2.50561 3.04927 3.13971 3.21688 3.26371 3.52666 3.69678 3.77868 3.85887 4.05373 4.10588 4.29234 4.39700 4.47802 4.54853 4.71404 4.79543 4.96232 5.03527 5.11784 5.23176 5.41455 5.44041 5.61446 5.75425 5.80991 5.88141 5.99041 6.28180 6.42915 6.93732 7.45430 7.61082 7.91023 8.45067 9.04332 9.35836 9.85479 10.64626 Molecular weight = 347.09amu Principal moments of inertia in cm(-1) A = 0.010104 B = 0.003176 C = 0.002576 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2770.439352 B = 8814.945871 C =10868.113801 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.897 5.897 2 C 0.026 3.974 3 Si 0.934 3.066 4 H -0.272 1.272 5 H -0.283 1.283 6 H -0.272 1.272 7 C -0.303 4.303 8 H 0.106 0.894 9 N -0.551 5.551 10 C 0.437 3.563 11 O -0.574 6.574 12 C 0.060 3.940 13 O -0.318 6.318 14 C 0.433 3.567 15 O -0.502 6.502 16 C 0.168 3.832 17 H 0.152 0.848 18 O -0.521 6.521 19 C -0.125 4.125 20 C -0.075 4.075 21 C -0.118 4.118 22 C -0.062 4.062 23 C -0.179 4.179 24 C 0.509 3.491 25 F -0.169 7.169 26 F -0.180 7.180 27 F -0.175 7.175 28 C -0.035 4.035 29 H 0.275 0.725 30 H 0.395 0.605 31 H 0.088 0.912 32 H 0.086 0.914 33 H 0.384 0.616 34 H 0.133 0.867 35 H 0.139 0.861 36 H 0.139 0.861 37 H 0.147 0.853 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.784 -20.041 6.347 21.803 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.538 5.538 2 C -0.176 4.176 3 Si 0.761 3.239 4 H -0.197 1.197 5 H -0.208 1.208 6 H -0.197 1.197 7 C -0.432 4.432 8 H 0.124 0.876 9 N -0.188 5.188 10 C 0.221 3.779 11 O -0.458 6.458 12 C -0.018 4.018 13 O -0.232 6.232 14 C 0.274 3.726 15 O -0.390 6.390 16 C 0.107 3.893 17 H 0.169 0.831 18 O -0.327 6.327 19 C -0.125 4.125 20 C -0.093 4.093 21 C -0.136 4.136 22 C -0.080 4.080 23 C -0.180 4.180 24 C 0.455 3.545 25 F -0.150 7.150 26 F -0.161 7.161 27 F -0.156 7.156 28 C -0.054 4.054 29 H 0.085 0.915 30 H 0.228 0.772 31 H 0.106 0.894 32 H 0.105 0.895 33 H 0.235 0.765 34 H 0.151 0.849 35 H 0.157 0.843 36 H 0.157 0.843 37 H 0.165 0.835 Dipole moment (debyes) X Y Z Total from point charges 6.484 -19.930 5.813 21.749 hybrid contribution -0.594 1.179 0.528 1.422 sum 5.891 -18.751 6.341 20.652 Atomic orbital electron populations 1.69605 1.06015 1.28636 1.49508 1.25309 0.95678 0.99873 0.96785 0.85857 0.78768 0.80033 0.79250 1.19713 1.20845 1.19715 1.19684 0.93475 0.81725 1.48350 0.87624 1.41690 1.09348 1.04072 1.63727 1.19268 0.88358 0.83995 0.86236 1.90572 1.13292 1.86704 1.55207 1.22817 0.90841 0.84558 1.03554 1.86548 1.40422 1.13949 1.82278 1.24480 0.89157 0.85845 0.73125 1.90685 1.16369 1.86649 1.45333 1.20214 0.90164 0.81359 0.97596 0.83096 1.86711 1.55073 1.37743 1.53181 1.20006 0.95332 1.01719 0.95456 1.21134 0.99732 0.96342 0.92065 1.21081 0.94061 1.00228 0.98223 1.21041 0.95572 0.94197 0.97203 1.19961 0.94496 1.06388 0.97201 1.18222 0.85917 0.76636 0.73739 1.93289 1.96283 1.34032 1.91404 1.93178 1.77826 1.79677 1.65414 1.93204 1.84997 1.95953 1.41465 1.20816 0.92896 0.94180 0.97458 0.91546 0.77183 0.89367 0.89545 0.76542 0.84949 0.84294 0.84342 0.83544 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -23.87 13.05 55.50 0.72 -23.15 16 2 C 0.03 0.69 5.50 -17.47 -0.10 0.59 16 3 Si 0.93 20.62 29.55 -169.99 -5.02 15.59 16 4 H -0.27 -5.96 7.11 56.52 0.40 -5.56 16 5 H -0.28 -6.09 7.11 56.52 0.40 -5.69 16 6 H -0.27 -5.97 7.11 56.52 0.40 -5.57 16 7 C -0.30 -8.30 9.68 -14.93 -0.14 -8.45 16 8 H 0.11 3.02 7.16 -52.48 -0.38 2.64 16 9 N -0.55 -13.76 5.29 -10.96 -0.06 -13.82 16 10 C 0.44 10.34 7.86 -10.98 -0.09 10.25 16 11 O -0.57 -15.65 16.08 -14.11 -0.23 -15.88 16 12 C 0.06 1.10 5.94 36.01 0.21 1.32 16 13 O -0.32 -5.57 9.74 -45.91 -0.45 -6.02 16 14 C 0.43 6.25 7.26 36.01 0.26 6.51 16 15 O -0.50 -8.04 16.07 -25.47 -0.41 -8.44 16 16 C 0.17 1.79 3.73 -29.03 -0.11 1.68 16 17 H 0.15 1.37 8.05 -51.93 -0.42 0.95 16 18 O -0.52 -5.10 12.79 -55.14 -0.71 -5.81 16 19 C -0.12 -1.28 4.98 -104.62 -0.52 -1.80 16 20 C -0.07 -0.63 9.33 -39.58 -0.37 -0.99 16 21 C -0.12 -0.90 10.05 -39.58 -0.40 -1.30 16 22 C -0.06 -0.55 9.40 -39.58 -0.37 -0.92 16 23 C -0.18 -1.96 5.45 -104.62 -0.57 -2.53 16 24 C 0.51 6.00 3.36 36.00 0.12 6.12 16 25 F -0.17 -2.37 17.30 2.25 0.04 -2.34 16 26 F -0.18 -1.94 16.46 2.25 0.04 -1.90 16 27 F -0.17 -2.13 16.46 2.25 0.04 -2.09 16 28 C -0.04 -0.40 9.03 -39.58 -0.36 -0.75 16 29 H 0.27 6.92 8.31 -40.82 -0.34 6.58 16 30 H 0.39 9.33 7.90 -40.82 -0.32 9.01 16 31 H 0.09 1.48 8.13 -51.93 -0.42 1.06 16 32 H 0.09 1.45 8.13 -51.93 -0.42 1.03 16 33 H 0.38 2.70 7.14 45.56 0.33 3.03 16 34 H 0.13 0.77 6.62 -52.49 -0.35 0.42 16 35 H 0.14 0.67 8.06 -52.49 -0.42 0.25 16 36 H 0.14 0.97 7.60 -52.48 -0.40 0.57 16 37 H 0.15 1.60 7.60 -52.49 -0.40 1.20 16 LS Contribution 350.42 15.07 5.28 5.28 Total: -1.00 -33.41 350.42 -5.52 -38.93 By element: Atomic # 1 Polarization: 12.26 SS G_CDS: -2.34 Total: 9.92 kcal Atomic # 6 Polarization: 12.15 SS G_CDS: -2.43 Total: 9.73 kcal Atomic # 7 Polarization: -37.64 SS G_CDS: 0.67 Total: -36.97 kcal Atomic # 8 Polarization: -34.36 SS G_CDS: -1.79 Total: -36.15 kcal Atomic # 9 Polarization: -6.45 SS G_CDS: 0.11 Total: -6.33 kcal Atomic # 14 Polarization: 20.62 SS G_CDS: -5.02 Total: 15.59 kcal Total LS contribution 5.28 Total: 5.28 kcal Total: -33.41 -5.52 -38.93 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000803812284.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -252.469 kcal (2) G-P(sol) polarization free energy of solvation -33.409 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -285.879 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.517 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.927 kcal (6) G-S(sol) free energy of system = (1) + (5) -291.396 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds