Wall clock time and date at job start Wed Apr 1 2020 04:22:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31413 * 1 3 3 Si 1.86802 * 119.99798 * 2 1 4 4 H 1.48499 * 109.46779 * 239.99472 * 3 2 1 5 5 H 1.48496 * 109.47370 * 359.97438 * 3 2 1 6 6 H 1.48498 * 109.47169 * 119.99962 * 3 2 1 7 7 C 1.38950 * 119.99939 * 179.97438 * 2 1 3 8 8 H 1.08007 * 119.99645 * 180.02562 * 7 2 1 9 9 N 1.37096 * 120.00274 * 0.02562 * 7 2 1 10 10 C 1.34781 * 120.00019 * 179.97438 * 9 7 2 11 11 O 1.21290 * 120.00130 * 359.97438 * 10 9 7 12 12 C 1.50699 * 119.99958 * 180.02562 * 10 9 7 13 13 O 1.45194 * 109.47064 * 180.02562 * 12 10 9 14 14 C 1.34233 * 116.99969 * 180.02562 * 13 12 10 15 15 O 1.20829 * 119.99885 * 359.97438 * 14 13 12 16 16 C 1.50699 * 120.00100 * 180.02562 * 14 13 12 17 17 H 1.09002 * 109.46959 * 304.99647 * 16 14 13 18 18 O 1.42898 * 109.46964 * 184.99677 * 16 14 13 19 19 C 1.50703 * 109.47227 * 64.99649 * 16 14 13 20 20 C 1.38258 * 119.99785 * 84.72730 * 19 16 14 21 21 C 1.38220 * 119.99829 * 179.76856 * 20 19 16 22 22 C 1.38256 * 119.99642 * 0.50685 * 21 20 19 23 23 C 1.38217 * 120.00330 * 359.74394 * 22 21 20 24 24 C 1.50697 * 119.99930 * 179.97438 * 23 22 21 25 25 F 1.39899 * 109.46763 * 270.02153 * 24 23 22 26 26 F 1.39898 * 109.47374 * 30.02398 * 24 23 22 27 27 F 1.39901 * 109.46997 * 150.02737 * 24 23 22 28 28 C 1.38206 * 119.99906 * 265.00235 * 19 16 14 29 29 H 0.97001 * 119.99941 * 0.02562 * 1 2 3 30 30 H 0.96994 * 120.00000 * 0.02562 * 9 7 2 31 31 H 1.09004 * 109.47371 * 59.99758 * 12 10 9 32 32 H 1.09001 * 109.46972 * 300.00200 * 12 10 9 33 33 H 0.96698 * 113.99898 * 299.99550 * 18 16 14 34 34 H 1.07996 * 120.00218 * 359.97438 * 20 19 16 35 35 H 1.07991 * 120.00147 * 180.23034 * 21 20 19 36 36 H 1.08005 * 119.99628 * 179.72894 * 22 21 20 37 37 H 1.07999 * 120.00496 * 359.97438 * 28 19 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2481 1.6178 0.0000 4 1 3.1019 1.6963 -1.2125 5 1 1.2831 2.7465 -0.0006 6 1 3.1018 1.6965 1.2125 7 6 2.0089 -1.2033 0.0005 8 1 3.0889 -1.2033 0.0010 9 7 1.3234 -2.3907 0.0005 10 6 1.9974 -3.5579 0.0005 11 8 3.2103 -3.5579 0.0001 12 6 1.2439 -4.8630 0.0000 13 8 2.1875 -5.9665 0.0007 14 6 1.6744 -7.2070 -0.0002 15 8 0.4766 -7.3653 -0.0012 16 6 2.5925 -8.4021 0.0010 17 1 3.2825 -8.3310 -0.8398 18 8 1.8184 -9.5974 -0.1177 19 6 3.3728 -8.4348 1.2899 20 6 2.8220 -9.0164 2.4168 21 6 3.5396 -9.0507 3.5976 22 6 4.8039 -8.4940 3.6546 23 6 5.3524 -7.9080 2.5294 24 6 6.7302 -7.3008 2.5917 25 9 6.6302 -5.9544 2.9584 26 9 7.4994 -7.9860 3.5382 27 9 7.3399 -7.3981 1.3363 28 6 4.6366 -7.8783 1.3468 29 1 -0.4850 0.8401 -0.0004 30 1 0.3535 -2.3907 -0.0002 31 1 0.6175 -4.9206 -0.8903 32 1 0.6169 -4.9209 0.8897 33 1 1.1814 -9.7261 0.5984 34 1 1.8325 -9.4469 2.3736 35 1 3.1110 -9.5082 4.4769 36 1 5.3628 -8.5169 4.5785 37 1 5.0652 -7.4204 0.4676 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000803812284.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:22:53 Heat of formation + Delta-G solvation = -313.026831 kcal Electronic energy + Delta-G solvation = -30128.329968 eV Core-core repulsion = 25034.260551 eV Total energy + Delta-G solvation = -5094.069417 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 347.086 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -51.22237 -48.73745 -48.69673 -42.08375 -40.65337 -40.00112 -38.28535 -37.19178 -36.04728 -33.45047 -33.29341 -32.84188 -30.39409 -28.39163 -27.14544 -26.50322 -23.80907 -23.22364 -22.10403 -21.46154 -20.09986 -19.70039 -19.55690 -19.50832 -19.39284 -18.34151 -17.89388 -17.63587 -17.38046 -16.87082 -16.70613 -16.43629 -15.86494 -15.72839 -15.59455 -15.51446 -15.16411 -15.06026 -14.91145 -14.84847 -14.80438 -14.72744 -14.22583 -13.95120 -13.83726 -13.69639 -13.56756 -13.28352 -12.94943 -12.91822 -12.50081 -12.40445 -12.21439 -12.13692 -11.93661 -11.58273 -11.43689 -10.53069 -10.31716 -10.12921 -10.05828 -8.53489 -6.04026 -0.21161 0.05236 0.88740 1.23333 1.36551 1.42951 1.53926 1.60122 1.85857 2.26349 2.33331 2.64672 2.90068 2.98650 3.11588 3.12233 3.28960 3.36342 3.55247 3.70791 3.92274 3.99186 4.02405 4.09000 4.12574 4.19705 4.35973 4.54703 4.75400 5.04080 5.14765 5.17074 5.19787 5.35800 5.63993 5.87278 6.25022 6.43838 6.52962 7.01842 7.38428 7.92127 8.63253 Molecular weight = 347.09amu Principal moments of inertia in cm(-1) A = 0.010104 B = 0.003176 C = 0.002576 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2770.439352 B = 8814.945871 C =10868.113801 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.915 5.915 2 C -0.006 4.006 3 Si 0.996 3.004 4 H -0.270 1.270 5 H -0.269 1.269 6 H -0.271 1.271 7 C -0.339 4.339 8 H 0.083 0.917 9 N -0.557 5.557 10 C 0.435 3.565 11 O -0.615 6.615 12 C 0.070 3.930 13 O -0.336 6.336 14 C 0.435 3.565 15 O -0.517 6.517 16 C 0.180 3.820 17 H 0.164 0.836 18 O -0.521 6.521 19 C -0.135 4.135 20 C -0.074 4.074 21 C -0.111 4.111 22 C -0.064 4.064 23 C -0.197 4.197 24 C 0.507 3.493 25 F -0.187 7.187 26 F -0.174 7.174 27 F -0.181 7.181 28 C -0.055 4.055 29 H 0.281 0.719 30 H 0.400 0.600 31 H 0.108 0.892 32 H 0.107 0.893 33 H 0.397 0.603 34 H 0.161 0.839 35 H 0.175 0.825 36 H 0.157 0.843 37 H 0.137 0.863 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.785 -21.190 7.276 22.909 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.555 5.555 2 C -0.207 4.207 3 Si 0.819 3.181 4 H -0.195 1.195 5 H -0.193 1.193 6 H -0.196 1.196 7 C -0.468 4.468 8 H 0.101 0.899 9 N -0.195 5.195 10 C 0.222 3.778 11 O -0.502 6.502 12 C -0.007 4.007 13 O -0.251 6.251 14 C 0.278 3.722 15 O -0.406 6.406 16 C 0.119 3.881 17 H 0.181 0.819 18 O -0.329 6.329 19 C -0.136 4.136 20 C -0.092 4.092 21 C -0.128 4.128 22 C -0.082 4.082 23 C -0.198 4.198 24 C 0.453 3.547 25 F -0.168 7.168 26 F -0.155 7.155 27 F -0.162 7.162 28 C -0.073 4.073 29 H 0.091 0.909 30 H 0.234 0.766 31 H 0.126 0.874 32 H 0.125 0.875 33 H 0.249 0.751 34 H 0.179 0.821 35 H 0.192 0.808 36 H 0.174 0.826 37 H 0.155 0.845 Dipole moment (debyes) X Y Z Total from point charges 5.448 -21.106 6.746 22.817 hybrid contribution -0.298 1.430 0.274 1.486 sum 5.149 -19.675 7.020 21.515 Atomic orbital electron populations 1.69660 1.06904 1.29796 1.49098 1.26086 0.96551 1.02477 0.95611 0.84950 0.77795 0.76278 0.79119 1.19529 1.19291 1.19572 1.19673 0.92917 0.83419 1.50781 0.89855 1.41725 1.09529 1.04170 1.64052 1.20105 0.88122 0.85384 0.84217 1.90541 1.15384 1.87658 1.56617 1.22552 0.90168 0.82545 1.05402 1.86562 1.40762 1.14881 1.82919 1.25273 0.89600 0.85394 0.71980 1.90672 1.17202 1.86613 1.46080 1.20211 0.89527 0.79800 0.98569 0.81939 1.86715 1.55405 1.36701 1.54060 1.20001 0.94966 1.02636 0.95962 1.21550 1.00879 0.95242 0.91479 1.21511 0.93176 0.99003 0.99132 1.21377 0.96336 0.93424 0.97081 1.20002 0.94023 1.07674 0.98118 1.18411 0.86740 0.75981 0.73531 1.93248 1.96415 1.35591 1.91570 1.93179 1.77805 1.79362 1.65139 1.93184 1.85216 1.95917 1.41918 1.20860 0.93810 0.95133 0.97525 0.90937 0.76575 0.87441 0.87534 0.75052 0.82103 0.80794 0.82573 0.84487 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -48.24 13.05 21.66 0.28 -47.96 16 2 C -0.01 -0.33 5.50 84.93 0.47 0.14 16 3 Si 1.00 41.98 29.55 68.60 2.03 44.00 16 4 H -0.27 -11.27 7.11 99.48 0.71 -10.56 16 5 H -0.27 -10.62 7.11 99.48 0.71 -9.91 16 6 H -0.27 -11.30 7.11 99.48 0.71 -10.59 16 7 C -0.34 -18.95 9.68 84.04 0.81 -18.14 16 8 H 0.08 4.95 7.16 -2.91 -0.02 4.93 16 9 N -0.56 -28.30 5.29 -306.98 -1.62 -29.92 16 10 C 0.44 20.94 7.86 87.66 0.69 21.63 16 11 O -0.62 -34.63 16.08 15.74 0.25 -34.37 16 12 C 0.07 2.56 5.94 71.24 0.42 2.98 16 13 O -0.34 -11.63 9.74 -45.09 -0.44 -12.07 16 14 C 0.43 11.97 7.26 71.24 0.52 12.48 16 15 O -0.52 -15.56 16.07 28.37 0.46 -15.11 16 16 C 0.18 3.57 3.73 29.10 0.11 3.68 16 17 H 0.16 2.80 8.05 -2.39 -0.02 2.78 16 18 O -0.52 -8.92 12.79 -129.95 -1.66 -10.58 16 19 C -0.14 -2.58 4.98 -19.87 -0.10 -2.67 16 20 C -0.07 -1.02 9.33 22.27 0.21 -0.81 16 21 C -0.11 -1.33 10.05 22.27 0.22 -1.11 16 22 C -0.06 -1.02 9.40 22.27 0.21 -0.81 16 23 C -0.20 -4.25 5.45 -19.86 -0.11 -4.36 16 24 C 0.51 12.21 3.36 71.23 0.24 12.45 16 25 F -0.19 -5.45 17.30 44.97 0.78 -4.67 16 26 F -0.17 -3.71 16.46 44.97 0.74 -2.97 16 27 F -0.18 -4.59 16.46 44.97 0.74 -3.85 16 28 C -0.06 -1.23 9.03 22.27 0.20 -1.03 16 29 H 0.28 13.86 8.31 -92.71 -0.77 13.09 16 30 H 0.40 19.08 7.90 -92.71 -0.73 18.34 16 31 H 0.11 3.49 8.13 -2.38 -0.02 3.47 16 32 H 0.11 3.44 8.13 -2.39 -0.02 3.42 16 33 H 0.40 4.36 7.14 -74.06 -0.53 3.83 16 34 H 0.16 1.22 6.62 -2.91 -0.02 1.20 16 35 H 0.17 0.86 8.06 -2.92 -0.02 0.83 16 36 H 0.16 1.83 7.60 -2.91 -0.02 1.81 16 37 H 0.14 3.17 7.60 -2.91 -0.02 3.15 16 Total: -1.00 -72.67 350.42 5.37 -67.30 By element: Atomic # 1 Polarization: 25.86 SS G_CDS: -0.08 Total: 25.79 kcal Atomic # 6 Polarization: 20.52 SS G_CDS: 3.89 Total: 24.42 kcal Atomic # 7 Polarization: -76.54 SS G_CDS: -1.34 Total: -77.88 kcal Atomic # 8 Polarization: -70.75 SS G_CDS: -1.39 Total: -72.14 kcal Atomic # 9 Polarization: -13.75 SS G_CDS: 2.26 Total: -11.49 kcal Atomic # 14 Polarization: 41.98 SS G_CDS: 2.03 Total: 44.00 kcal Total: -72.67 5.37 -67.30 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000803812284.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -245.726 kcal (2) G-P(sol) polarization free energy of solvation -72.671 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -318.397 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.370 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.301 kcal (6) G-S(sol) free energy of system = (1) + (5) -313.027 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds