Wall clock time and date at job start Wed Apr 1 2020 04:22:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31406 * 1 3 3 Si 1.86804 * 119.99984 * 2 1 4 4 H 1.48501 * 109.47317 * 180.02562 * 3 2 1 5 5 H 1.48499 * 109.47089 * 300.00375 * 3 2 1 6 6 H 1.48500 * 109.47027 * 60.00459 * 3 2 1 7 7 C 1.38955 * 120.00261 * 180.02562 * 2 1 3 8 8 H 1.07998 * 119.99772 * 179.97438 * 7 2 1 9 9 N 1.37093 * 119.99710 * 0.02562 * 7 2 1 10 10 C 1.34786 * 119.99836 * 179.97438 * 9 7 2 11 11 O 1.21289 * 119.99680 * 359.97438 * 10 9 7 12 12 C 1.50695 * 119.99870 * 179.97438 * 10 9 7 13 13 O 1.45196 * 109.46972 * 180.02562 * 12 10 9 14 14 C 1.34231 * 117.00030 * 180.02562 * 13 12 10 15 15 O 1.20831 * 119.99869 * 359.97438 * 14 13 12 16 16 C 1.50701 * 119.99976 * 179.97438 * 14 13 12 17 17 H 1.09000 * 109.47120 * 55.00186 * 16 14 13 18 18 O 1.42905 * 109.46937 * 175.00151 * 16 14 13 19 19 C 1.50699 * 109.47269 * 294.99943 * 16 14 13 20 20 C 1.38259 * 119.99948 * 280.00260 * 19 16 14 21 21 C 1.38217 * 119.99635 * 180.02562 * 20 19 16 22 22 C 1.38253 * 120.00116 * 359.94800 * 21 20 19 23 23 C 1.38209 * 120.00029 * 0.02562 * 22 21 20 24 24 C 1.50709 * 119.99934 * 180.02562 * 23 22 21 25 25 F 1.39905 * 109.46747 * 359.97438 * 24 23 22 26 26 F 1.39899 * 109.46995 * 119.99859 * 24 23 22 27 27 F 1.39899 * 109.47111 * 239.99823 * 24 23 22 28 28 C 1.38213 * 119.99813 * 99.72391 * 19 16 14 29 29 H 0.96995 * 120.00256 * 359.97438 * 1 2 3 30 30 H 0.97000 * 120.00388 * 359.97438 * 9 7 2 31 31 H 1.09003 * 109.47275 * 59.99740 * 12 10 9 32 32 H 1.09002 * 109.47313 * 300.00166 * 12 10 9 33 33 H 0.96691 * 114.00079 * 59.99815 * 18 16 14 34 34 H 1.07999 * 120.00076 * 359.97334 * 20 19 16 35 35 H 1.08001 * 119.99613 * 179.97438 * 21 20 19 36 36 H 1.08005 * 119.99747 * 180.02562 * 22 21 20 37 37 H 1.07996 * 120.00161 * 0.02562 * 28 19 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2481 1.6178 0.0000 4 1 3.7081 1.3465 -0.0006 5 1 1.8892 2.3965 -1.2124 6 1 1.8894 2.3964 1.2126 7 6 2.0089 -1.2034 -0.0005 8 1 3.0889 -1.2033 -0.0010 9 7 1.3234 -2.3906 -0.0016 10 6 1.9974 -3.5579 -0.0026 11 8 3.2103 -3.5578 -0.0031 12 6 1.2439 -4.8629 -0.0032 13 8 2.1875 -5.9665 -0.0037 14 6 1.6744 -7.2069 -0.0048 15 8 0.4765 -7.3652 -0.0049 16 6 2.5925 -8.4020 -0.0060 17 1 3.2813 -8.3318 0.8359 18 8 1.8183 -9.5975 0.1104 19 6 3.3746 -8.4335 -1.2937 20 6 2.7896 -8.9251 -2.4460 21 6 3.5072 -8.9544 -3.6269 22 6 4.8095 -8.4911 -3.6562 23 6 5.3940 -7.9992 -2.5045 24 6 6.8134 -7.4937 -2.5366 25 9 7.3258 -7.6245 -3.8318 26 9 6.8374 -6.1468 -2.1588 27 9 7.5948 -8.2410 -1.6487 28 6 4.6747 -7.9655 -1.3242 29 1 -0.4850 0.8400 0.0004 30 1 0.3534 -2.3907 -0.0016 31 1 0.6168 -4.9201 -0.8930 32 1 0.6175 -4.9213 0.8869 33 1 1.1823 -9.7255 -0.6066 34 1 1.7723 -9.2869 -2.4231 35 1 3.0503 -9.3388 -4.5269 36 1 5.3700 -8.5136 -4.5792 37 1 5.1303 -7.5777 -0.4251 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000803812285.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:22:56 Heat of formation + Delta-G solvation = -291.352166 kcal Electronic energy + Delta-G solvation = -30076.254377 eV Core-core repulsion = 24983.124844 eV Total energy + Delta-G solvation = -5093.129533 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 347.086 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -50.28759 -47.83636 -47.70171 -40.99858 -39.70490 -38.28204 -37.22243 -36.01702 -34.03972 -32.55729 -32.13991 -31.41391 -28.98544 -27.27306 -26.32329 -24.62939 -23.03701 -22.32848 -21.07734 -19.65261 -18.88077 -18.59706 -18.55845 -18.31856 -18.12103 -17.16265 -16.75001 -16.66027 -15.97617 -15.80729 -15.60437 -14.75332 -14.65924 -14.60623 -14.32703 -14.25830 -14.17994 -14.03159 -13.91437 -13.87471 -13.86396 -13.35989 -13.29377 -12.97855 -12.60494 -12.37183 -12.23116 -12.01589 -11.64892 -11.60970 -11.36014 -11.17500 -10.54882 -10.46041 -10.40810 -10.31643 -9.64450 -9.61198 -9.33011 -8.56471 -8.11386 -6.52852 -3.94844 0.50420 0.77572 2.00325 2.41253 2.49597 3.03868 3.09949 3.22601 3.30135 3.51063 3.69343 3.77000 3.87567 4.04840 4.09912 4.27514 4.38895 4.47465 4.54580 4.70937 4.79253 4.95796 5.02884 5.11544 5.23236 5.40452 5.43163 5.61232 5.74627 5.80820 5.87630 5.98917 6.27726 6.42803 6.94058 7.45637 7.61052 7.91302 8.44874 9.04391 9.35793 9.85333 10.64402 Molecular weight = 347.09amu Principal moments of inertia in cm(-1) A = 0.010164 B = 0.003112 C = 0.002544 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2754.061270 B = 8994.137448 C =11001.664123 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.897 5.897 2 C 0.025 3.975 3 Si 0.933 3.067 4 H -0.266 1.266 5 H -0.280 1.280 6 H -0.280 1.280 7 C -0.302 4.302 8 H 0.107 0.893 9 N -0.552 5.552 10 C 0.437 3.563 11 O -0.573 6.573 12 C 0.060 3.940 13 O -0.318 6.318 14 C 0.432 3.568 15 O -0.502 6.502 16 C 0.168 3.832 17 H 0.151 0.849 18 O -0.521 6.521 19 C -0.123 4.123 20 C -0.075 4.075 21 C -0.117 4.117 22 C -0.064 4.064 23 C -0.179 4.179 24 C 0.508 3.492 25 F -0.179 7.179 26 F -0.167 7.167 27 F -0.177 7.177 28 C -0.034 4.034 29 H 0.274 0.726 30 H 0.394 0.606 31 H 0.087 0.913 32 H 0.088 0.912 33 H 0.384 0.616 34 H 0.133 0.867 35 H 0.139 0.861 36 H 0.141 0.859 37 H 0.144 0.856 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.840 -20.085 -6.372 21.866 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.537 5.537 2 C -0.177 4.177 3 Si 0.759 3.241 4 H -0.190 1.190 5 H -0.206 1.206 6 H -0.206 1.206 7 C -0.431 4.431 8 H 0.125 0.875 9 N -0.189 5.189 10 C 0.222 3.778 11 O -0.457 6.457 12 C -0.018 4.018 13 O -0.231 6.231 14 C 0.274 3.726 15 O -0.391 6.391 16 C 0.107 3.893 17 H 0.168 0.832 18 O -0.327 6.327 19 C -0.124 4.124 20 C -0.093 4.093 21 C -0.135 4.135 22 C -0.082 4.082 23 C -0.181 4.181 24 C 0.454 3.546 25 F -0.160 7.160 26 F -0.148 7.148 27 F -0.158 7.158 28 C -0.052 4.052 29 H 0.083 0.917 30 H 0.228 0.772 31 H 0.105 0.895 32 H 0.106 0.894 33 H 0.235 0.765 34 H 0.150 0.850 35 H 0.157 0.843 36 H 0.159 0.841 37 H 0.162 0.838 Dipole moment (debyes) X Y Z Total from point charges 6.553 -19.982 -5.835 21.824 hybrid contribution -0.612 1.172 -0.519 1.420 sum 5.942 -18.810 -6.354 20.724 Atomic orbital electron populations 1.69615 1.06022 1.28424 1.49685 1.25312 0.95678 0.99881 0.96834 0.85747 0.79761 0.80722 0.77829 1.19043 1.20602 1.20585 1.19784 0.93527 0.81696 1.48096 0.87515 1.41708 1.09354 1.04091 1.63778 1.19274 0.88362 0.83999 0.86194 1.90576 1.13282 1.86700 1.55127 1.22818 0.90844 0.84571 1.03554 1.86553 1.40399 1.13941 1.82257 1.24483 0.89153 0.85855 0.73128 1.90686 1.16365 1.86656 1.45347 1.20215 0.90169 0.81376 0.97579 0.83155 1.86711 1.55135 1.37710 1.53121 1.19990 0.94875 1.02255 0.95265 1.21149 0.99953 0.96220 0.92010 1.21095 0.93839 1.00282 0.98318 1.21108 0.95458 0.94415 0.97200 1.19956 0.93366 1.07770 0.96976 1.18239 0.86738 0.76045 0.73567 1.93159 1.88736 1.95695 1.38431 1.93305 1.96860 1.33593 1.91023 1.93217 1.77205 1.76555 1.68861 1.20745 0.93047 0.93887 0.97552 0.91654 0.77192 0.89534 0.89375 0.76548 0.84969 0.84284 0.84085 0.83815 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -23.85 13.05 55.50 0.72 -23.13 16 2 C 0.03 0.67 5.50 -17.47 -0.10 0.57 16 3 Si 0.93 20.59 29.55 -169.99 -5.02 15.56 16 4 H -0.27 -5.89 7.11 56.52 0.40 -5.49 16 5 H -0.28 -6.08 7.11 56.52 0.40 -5.68 16 6 H -0.28 -6.08 7.11 56.52 0.40 -5.67 16 7 C -0.30 -8.26 9.68 -14.93 -0.14 -8.40 16 8 H 0.11 3.06 7.16 -52.49 -0.38 2.69 16 9 N -0.55 -13.77 5.29 -10.96 -0.06 -13.83 16 10 C 0.44 10.34 7.86 -10.98 -0.09 10.26 16 11 O -0.57 -15.65 16.08 -14.11 -0.23 -15.88 16 12 C 0.06 1.10 5.94 36.00 0.21 1.31 16 13 O -0.32 -5.57 9.74 -45.91 -0.45 -6.01 16 14 C 0.43 6.24 7.25 36.01 0.26 6.50 16 15 O -0.50 -8.01 16.07 -25.47 -0.41 -8.42 16 16 C 0.17 1.79 3.73 -29.03 -0.11 1.68 16 17 H 0.15 1.37 8.01 -51.93 -0.42 0.95 16 18 O -0.52 -5.12 12.84 -55.13 -0.71 -5.83 16 19 C -0.12 -1.26 4.95 -104.62 -0.52 -1.78 16 20 C -0.08 -0.64 9.32 -39.58 -0.37 -1.01 16 21 C -0.12 -0.91 10.05 -39.58 -0.40 -1.30 16 22 C -0.06 -0.57 9.43 -39.59 -0.37 -0.94 16 23 C -0.18 -1.94 5.37 -104.62 -0.56 -2.50 16 24 C 0.51 5.86 3.32 36.01 0.12 5.98 16 25 F -0.18 -1.95 15.97 2.25 0.04 -1.91 16 26 F -0.17 -2.34 17.23 2.25 0.04 -2.30 16 27 F -0.18 -2.01 17.24 2.25 0.04 -1.97 16 28 C -0.03 -0.38 9.22 -39.58 -0.37 -0.74 16 29 H 0.27 6.85 8.31 -40.82 -0.34 6.51 16 30 H 0.39 9.32 7.90 -40.82 -0.32 9.00 16 31 H 0.09 1.45 8.13 -51.93 -0.42 1.03 16 32 H 0.09 1.48 8.13 -51.93 -0.42 1.06 16 33 H 0.38 2.72 7.25 45.56 0.33 3.05 16 34 H 0.13 0.80 6.79 -52.49 -0.36 0.44 16 35 H 0.14 0.68 8.06 -52.49 -0.42 0.26 16 36 H 0.14 0.99 7.16 -52.48 -0.38 0.62 16 37 H 0.14 1.49 8.04 -52.49 -0.42 1.07 16 LS Contribution 350.94 15.07 5.29 5.29 Total: -1.00 -33.48 350.94 -5.51 -38.99 By element: Atomic # 1 Polarization: 12.16 SS G_CDS: -2.34 Total: 9.82 kcal Atomic # 6 Polarization: 12.05 SS G_CDS: -2.43 Total: 9.62 kcal Atomic # 7 Polarization: -37.62 SS G_CDS: 0.67 Total: -36.96 kcal Atomic # 8 Polarization: -34.35 SS G_CDS: -1.79 Total: -36.14 kcal Atomic # 9 Polarization: -6.30 SS G_CDS: 0.11 Total: -6.19 kcal Atomic # 14 Polarization: 20.59 SS G_CDS: -5.02 Total: 15.56 kcal Total LS contribution 5.29 Total: 5.29 kcal Total: -33.48 -5.51 -38.99 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000803812285.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -252.364 kcal (2) G-P(sol) polarization free energy of solvation -33.477 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -285.841 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.511 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.988 kcal (6) G-S(sol) free energy of system = (1) + (5) -291.352 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds