Wall clock time and date at job start Wed Apr 1 2020 04:40:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86798 * 119.99607 * 2 1 4 4 H 1.48496 * 109.47009 * 239.99830 * 3 2 1 5 5 H 1.48498 * 109.47590 * 0.02562 * 3 2 1 6 6 H 1.48501 * 109.46858 * 120.00271 * 3 2 1 7 7 C 1.37871 * 119.99998 * 180.02562 * 2 1 3 8 8 H 1.08001 * 120.00092 * 180.02562 * 7 2 1 9 9 C 1.50703 * 120.00445 * 359.97438 * 7 2 1 10 10 C 1.52997 * 109.47646 * 180.02562 * 9 7 2 11 11 C 1.52995 * 109.47600 * 180.02562 * 10 9 7 12 12 C 1.52990 * 109.47353 * 180.02562 * 11 10 9 13 13 C 1.50703 * 109.47398 * 179.97438 * 12 11 10 14 14 O 1.21283 * 119.99488 * 359.97438 * 13 12 11 15 15 N 1.34777 * 120.00290 * 180.02562 * 13 12 11 16 16 S 1.65597 * 119.99988 * 180.27691 * 15 13 12 17 17 O 1.42096 * 106.40195 * 178.26242 * 16 15 13 18 18 O 1.42108 * 106.40105 * 311.18298 * 16 15 13 19 19 C 1.76199 * 107.22117 * 64.71999 * 16 15 13 20 20 C 1.38259 * 119.96450 * 269.72723 * 19 16 15 21 21 C 1.38219 * 120.06914 * 179.76709 * 20 19 16 22 22 C 1.38410 * 119.99806 * 0.50169 * 21 20 19 23 23 F 1.35099 * 120.03378 * 179.72357 * 22 21 20 24 24 C 1.38651 * 119.93097 * 359.75137 * 22 21 20 25 25 F 1.35101 * 120.03508 * 180.02562 * 24 22 21 26 26 C 1.38212 * 119.96494 * 89.99991 * 19 16 15 27 27 H 0.96996 * 120.00393 * 359.97438 * 1 2 3 28 28 H 1.08998 * 109.46954 * 59.99756 * 9 7 2 29 29 H 1.09005 * 109.46634 * 299.99918 * 9 7 2 30 30 H 1.08999 * 109.46950 * 59.99410 * 10 9 7 31 31 H 1.09003 * 109.46788 * 300.00484 * 10 9 7 32 32 H 1.08998 * 109.47142 * 59.99377 * 11 10 9 33 33 H 1.09011 * 109.46657 * 299.99934 * 11 10 9 34 34 H 1.08998 * 109.47508 * 59.99597 * 12 11 10 35 35 H 1.09002 * 109.47337 * 299.99883 * 12 11 10 36 36 H 0.97001 * 119.99727 * 359.97438 * 15 13 12 37 37 H 1.08000 * 119.96702 * 0.02562 * 20 19 16 38 38 H 1.08001 * 119.99959 * 180.25637 * 21 20 19 39 39 H 1.08006 * 120.00192 * 359.95668 * 26 19 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 3.1028 1.6965 -1.2125 5 1 1.2841 2.7465 0.0006 6 1 3.1028 1.6964 1.2125 7 6 2.0045 -1.1940 -0.0005 8 1 3.0845 -1.1940 -0.0001 9 6 1.2511 -2.4992 -0.0005 10 6 2.2453 -3.6621 -0.0005 11 6 1.4804 -4.9871 -0.0012 12 6 2.4746 -6.1499 -0.0005 13 6 1.7212 -7.4551 -0.0005 14 8 0.5084 -7.4551 -0.0005 15 7 2.3951 -8.6223 0.0005 16 16 1.5672 -10.0564 -0.0064 17 8 2.5468 -11.0851 -0.0449 18 8 0.5841 -9.9571 1.0149 19 6 0.6915 -10.1459 -1.5328 20 6 -0.5943 -9.6455 -1.6216 21 6 -1.2814 -9.7102 -2.8191 22 6 -0.6862 -10.2857 -3.9283 23 9 -1.3593 -10.3543 -5.0977 24 6 0.6013 -10.7922 -3.8378 25 9 1.1845 -11.3539 -4.9193 26 6 1.2886 -10.7212 -2.6385 27 1 -0.4850 0.8400 0.0004 28 1 0.6241 -2.5567 -0.8903 29 1 0.6248 -2.5571 0.8898 30 1 2.8720 -3.6043 0.8894 31 1 2.8720 -3.6043 -0.8905 32 1 0.8540 -5.0446 -0.8913 33 1 0.8534 -5.0451 0.8887 34 1 3.1007 -6.0923 0.8898 35 1 3.1019 -6.0922 -0.8901 36 1 3.3651 -8.6222 0.0009 37 1 -1.0608 -9.1998 -0.7554 38 1 -2.2843 -9.3152 -2.8883 39 1 2.2917 -11.1151 -2.5669 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000805844861.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:40:35 Heat of formation + Delta-G solvation = -191.769259 kcal Electronic energy + Delta-G solvation = -27340.054884 eV Core-core repulsion = 22817.456765 eV Total energy + Delta-G solvation = -4522.598118 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 347.084 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -50.07778 -49.13517 -40.39855 -39.45609 -37.75566 -36.42634 -35.13425 -34.83994 -32.71078 -31.81089 -31.17699 -29.92031 -26.00237 -24.26365 -23.78554 -23.16676 -21.20814 -20.38671 -20.09637 -19.20270 -18.42731 -17.93447 -17.88986 -17.44422 -16.90101 -16.68542 -16.22008 -16.02757 -15.52526 -15.50988 -15.09121 -14.79329 -14.69738 -14.39945 -14.32527 -14.02693 -13.48307 -13.28918 -13.02384 -12.67689 -12.64423 -12.53866 -12.49370 -12.17406 -11.85576 -11.72495 -11.63322 -11.17472 -11.04963 -10.68003 -10.65059 -10.52589 -10.43578 -9.95023 -9.70630 -9.54280 -9.32490 -9.07029 -8.35260 -6.00191 -4.03078 -0.44294 -0.08141 0.33681 1.81814 2.16397 2.55723 3.04895 3.14643 3.31966 3.36914 3.38653 3.53176 3.78792 3.95545 4.16239 4.31853 4.41337 4.45106 4.58506 4.74048 5.00887 5.04298 5.11540 5.18803 5.30315 5.35378 5.38651 5.59975 5.97073 6.02211 6.09925 6.22541 6.38965 6.69947 6.87792 7.10614 7.22580 7.67369 7.82163 8.00160 8.41692 9.04332 9.61024 11.11043 Molecular weight = 347.08amu Principal moments of inertia in cm(-1) A = 0.013296 B = 0.002279 C = 0.002077 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2105.452689 B =12285.429504 C =13480.034764 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.895 5.895 2 C 0.056 3.944 3 Si 0.892 3.108 4 H -0.277 1.277 5 H -0.287 1.287 6 H -0.277 1.277 7 C -0.523 4.523 8 H 0.054 0.946 9 C 0.020 3.980 10 C -0.111 4.111 11 C -0.109 4.109 12 C -0.140 4.140 13 C 0.534 3.466 14 O -0.485 6.485 15 N -1.055 6.055 16 S 2.685 3.315 17 O -0.942 6.942 18 O -0.920 6.920 19 C -0.668 4.668 20 C 0.024 3.976 21 C -0.147 4.147 22 C 0.130 3.870 23 F -0.117 7.117 24 C 0.043 3.957 25 F -0.122 7.122 26 C -0.025 4.025 27 H 0.261 0.739 28 H 0.016 0.984 29 H 0.016 0.984 30 H 0.049 0.951 31 H 0.048 0.952 32 H 0.066 0.934 33 H 0.069 0.931 34 H 0.104 0.896 35 H 0.103 0.897 36 H 0.437 0.563 37 H 0.169 0.831 38 H 0.161 0.839 39 H 0.164 0.836 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.591 -25.210 -4.891 25.930 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.534 5.534 2 C -0.145 4.145 3 Si 0.720 3.280 4 H -0.203 1.203 5 H -0.213 1.213 6 H -0.203 1.203 7 C -0.561 4.561 8 H 0.072 0.928 9 C -0.017 4.017 10 C -0.149 4.149 11 C -0.147 4.147 12 C -0.182 4.182 13 C 0.323 3.677 14 O -0.356 6.356 15 N -0.822 5.822 16 S 2.775 3.225 17 O -0.932 6.932 18 O -0.910 6.910 19 C -0.755 4.755 20 C 0.004 3.996 21 C -0.167 4.167 22 C 0.110 3.890 23 F -0.095 7.095 24 C 0.022 3.978 25 F -0.101 7.101 26 C -0.045 4.045 27 H 0.071 0.929 28 H 0.034 0.966 29 H 0.035 0.965 30 H 0.068 0.932 31 H 0.067 0.933 32 H 0.085 0.915 33 H 0.087 0.913 34 H 0.123 0.877 35 H 0.121 0.879 36 H 0.274 0.726 37 H 0.187 0.813 38 H 0.178 0.822 39 H 0.182 0.818 Dipole moment (debyes) X Y Z Total from point charges 2.505 -25.709 -4.330 26.191 hybrid contribution 0.749 1.008 -1.272 1.788 sum 3.254 -24.701 -5.603 25.537 Atomic orbital electron populations 1.69953 1.06058 1.26715 1.50703 1.25031 0.94840 0.99247 0.95371 0.86670 0.79585 0.83228 0.78566 1.20284 1.21309 1.20262 1.21230 0.92951 0.91186 1.50743 0.92789 1.19088 0.94021 0.91226 0.97349 1.21654 0.99153 0.93743 1.00301 1.21561 0.97060 0.92718 1.03399 1.21985 1.00431 0.90495 1.05256 1.21278 0.88382 0.85911 0.72166 1.90841 1.13336 1.86917 1.44495 1.55152 1.22015 1.23531 1.81534 1.02550 0.73717 0.72397 0.73867 1.93651 1.59838 1.52865 1.86847 1.93675 1.59972 1.84890 1.52452 1.30740 1.09036 1.14735 1.20975 1.21126 0.90873 0.89246 0.98311 1.21349 1.02677 1.01508 0.91121 1.18048 0.89496 0.98413 0.83083 1.91594 1.79227 1.93674 1.45012 1.17592 0.91755 1.02918 0.85537 1.91575 1.83622 1.82668 1.52225 1.20812 1.00521 0.93997 0.89182 0.92933 0.96594 0.96525 0.93235 0.93333 0.91479 0.91257 0.87745 0.87863 0.72622 0.81348 0.82166 0.81812 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.77 13.29 55.43 0.74 -26.04 16 2 C 0.06 1.60 5.46 -17.82 -0.10 1.50 16 3 Si 0.89 21.34 29.54 -169.99 -5.02 16.32 16 4 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 5 H -0.29 -6.84 7.11 56.52 0.40 -6.43 16 6 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 7 C -0.52 -14.50 9.11 -34.44 -0.31 -14.81 16 8 H 0.05 1.44 7.74 -52.49 -0.41 1.03 16 9 C 0.02 0.51 4.97 -27.88 -0.14 0.37 16 10 C -0.11 -2.05 5.15 -26.73 -0.14 -2.19 16 11 C -0.11 -1.64 4.50 -26.74 -0.12 -1.76 16 12 C -0.14 -1.38 5.70 -27.89 -0.16 -1.54 16 13 C 0.53 5.43 7.66 -10.98 -0.08 5.34 16 14 O -0.49 -6.45 13.20 -11.44 -0.15 -6.60 16 15 N -1.06 -7.42 5.70 31.22 0.18 -7.25 16 16 S 2.68 24.30 5.40 -107.50 -0.58 23.72 16 17 O -0.94 -9.33 17.28 -57.17 -0.99 -10.32 16 18 O -0.92 -11.55 16.23 -64.58 -1.05 -12.60 16 19 C -0.67 -5.88 5.74 -39.58 -0.23 -6.11 16 20 C 0.02 0.22 8.52 -39.58 -0.34 -0.12 16 21 C -0.15 -1.21 10.02 -39.52 -0.40 -1.61 16 22 C 0.13 1.21 7.31 -39.37 -0.29 0.92 16 23 F -0.12 -1.16 17.18 2.25 0.04 -1.12 16 24 C 0.04 0.40 7.31 -39.37 -0.29 0.11 16 25 F -0.12 -1.21 17.18 2.25 0.04 -1.17 16 26 C -0.03 -0.20 9.50 -39.53 -0.38 -0.58 16 27 H 0.26 7.38 8.31 -40.82 -0.34 7.04 16 28 H 0.02 0.42 8.14 -51.93 -0.42 0.00 16 29 H 0.02 0.44 8.14 -51.93 -0.42 0.02 16 30 H 0.05 0.88 8.14 -51.93 -0.42 0.46 16 31 H 0.05 0.86 8.14 -51.93 -0.42 0.43 16 32 H 0.07 1.05 8.10 -51.93 -0.42 0.63 16 33 H 0.07 1.12 8.10 -51.92 -0.42 0.69 16 34 H 0.10 0.82 8.14 -51.93 -0.42 0.40 16 35 H 0.10 0.78 8.14 -51.93 -0.42 0.35 16 36 H 0.44 1.35 8.83 -34.47 -0.30 1.04 16 37 H 0.17 1.55 6.86 -52.49 -0.36 1.19 16 38 H 0.16 0.97 8.06 -52.49 -0.42 0.55 16 39 H 0.16 0.95 7.62 -52.48 -0.40 0.55 16 LS Contribution 359.73 15.07 5.42 5.42 Total: -1.00 -35.59 359.73 -8.74 -44.33 By element: Atomic # 1 Polarization: 0.18 SS G_CDS: -4.41 Total: -4.23 kcal Atomic # 6 Polarization: -17.51 SS G_CDS: -2.96 Total: -20.47 kcal Atomic # 7 Polarization: -34.20 SS G_CDS: 0.91 Total: -33.28 kcal Atomic # 8 Polarization: -27.34 SS G_CDS: -2.19 Total: -29.53 kcal Atomic # 9 Polarization: -2.37 SS G_CDS: 0.08 Total: -2.29 kcal Atomic # 14 Polarization: 21.34 SS G_CDS: -5.02 Total: 16.32 kcal Atomic # 16 Polarization: 24.30 SS G_CDS: -0.58 Total: 23.72 kcal Total LS contribution 5.42 Total: 5.42 kcal Total: -35.59 -8.74 -44.33 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000805844861.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -147.439 kcal (2) G-P(sol) polarization free energy of solvation -35.587 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -183.026 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.743 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.330 kcal (6) G-S(sol) free energy of system = (1) + (5) -191.769 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds