Wall clock time and date at job start Wed Apr 1 2020 04:22:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31555 * 1 3 3 Si 1.86803 * 120.00191 * 2 1 4 4 H 1.48504 * 109.46736 * 240.00123 * 3 2 1 5 5 H 1.48499 * 109.46902 * 359.97438 * 3 2 1 6 6 H 1.48492 * 109.47104 * 119.99806 * 3 2 1 7 7 C 1.38654 * 119.99807 * 179.97438 * 2 1 3 8 8 H 1.07998 * 119.99910 * 180.02562 * 7 2 1 9 9 O 1.34829 * 120.00063 * 359.97438 * 7 2 1 10 10 C 1.35755 * 116.99952 * 185.05705 * 9 7 2 11 11 C 1.38875 * 120.07001 * 354.46995 * 10 9 7 12 12 C 1.38099 * 119.93031 * 180.02562 * 11 10 9 13 13 C 1.38301 * 120.06889 * 0.02562 * 12 11 10 14 14 C 1.50700 * 119.92643 * 179.97438 * 13 12 11 15 15 C 1.50701 * 109.47274 * 90.00206 * 14 13 12 16 16 O 1.21284 * 119.99657 * 359.97438 * 15 14 13 17 17 N 1.34771 * 120.00142 * 179.97438 * 15 14 13 18 18 C 1.46507 * 120.00248 * 179.97438 * 17 15 14 19 19 C 1.50696 * 109.46997 * 180.02562 * 18 17 15 20 20 N 1.32119 * 120.00947 * 90.00553 * 19 18 17 21 21 C 1.32137 * 120.01761 * 179.97438 * 20 19 18 22 22 C 1.38345 * 120.03527 * 359.97438 * 21 20 19 23 23 N 1.32144 * 120.01637 * 0.02562 * 22 21 20 24 24 C 1.32249 * 119.98541 * 0.02562 * 23 22 21 25 25 Cl 1.73599 * 120.01602 * 179.97438 * 24 23 22 26 26 C 1.38299 * 120.13883 * 0.25095 * 13 12 11 27 27 C 1.38103 * 120.06571 * 359.45854 * 26 13 12 28 28 H 0.97003 * 119.99948 * 0.02562 * 1 2 3 29 29 H 1.08007 * 120.03329 * 359.97438 * 11 10 9 30 30 H 1.07996 * 119.96319 * 179.97438 * 12 11 10 31 31 H 1.08993 * 109.47408 * 329.99393 * 14 13 12 32 32 H 1.09003 * 109.46488 * 209.99382 * 14 13 12 33 33 H 0.96996 * 120.00091 * 0.02562 * 17 15 14 34 34 H 1.09000 * 109.46430 * 60.00536 * 18 17 15 35 35 H 1.09002 * 109.46837 * 300.00543 * 18 17 15 36 36 H 1.08009 * 119.98306 * 179.97438 * 21 20 19 37 37 H 1.08005 * 119.99175 * 179.74282 * 22 21 20 38 38 H 1.07995 * 119.96687 * 179.70537 * 26 13 12 39 39 H 1.08007 * 120.03170 * 180.27542 * 27 26 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3156 0.0000 0.0000 3 14 2.2496 1.6177 0.0000 4 1 3.1033 1.6963 -1.2126 5 1 1.2846 2.7464 -0.0006 6 1 3.1033 1.6964 1.2125 7 6 2.0088 -1.2008 0.0005 8 1 3.0888 -1.2008 0.0010 9 8 1.3346 -2.3684 0.0016 10 6 2.0699 -3.5046 0.1087 11 6 3.4571 -3.4395 0.0953 12 6 4.2023 -4.5971 0.2039 13 6 3.5685 -5.8203 0.3254 14 6 4.3849 -7.0816 0.4431 15 6 4.6642 -7.3654 1.8965 16 8 4.2424 -6.6168 2.7525 17 7 5.3828 -8.4509 2.2452 18 6 5.6549 -8.7265 3.6582 19 6 6.4711 -9.9878 3.7758 20 7 7.7907 -9.9246 3.7625 21 6 8.5065 -11.0304 3.8661 22 6 7.8750 -12.2552 3.9892 23 7 6.5552 -12.3200 4.0026 24 6 5.8380 -11.2138 3.8979 25 17 4.1041 -11.2981 3.9148 26 6 2.1873 -5.8890 0.3333 27 6 1.4365 -4.7344 0.2311 28 1 -0.4850 0.8401 -0.0004 29 1 3.9526 -2.4846 -0.0009 30 1 5.2810 -4.5472 0.1931 31 1 5.3270 -6.9557 -0.0902 32 1 3.8308 -7.9146 0.0103 33 1 5.7205 -9.0494 1.5606 34 1 4.7127 -8.8519 4.1917 35 1 6.2093 -7.8936 4.0905 36 1 9.5853 -10.9782 3.8548 37 1 8.4607 -13.1590 4.0697 38 1 1.6953 -6.8461 0.4236 39 1 0.3578 -4.7882 0.2418 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000808067123.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:22:09 Heat of formation + Delta-G solvation = 9.558518 kcal Electronic energy + Delta-G solvation = -25736.911838 eV Core-core repulsion = 21671.689428 eV Total energy + Delta-G solvation = -4065.222410 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 347.082 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -41.88064 -39.77259 -38.74610 -37.39990 -36.55315 -35.70325 -34.47835 -32.51170 -32.19065 -31.20767 -30.09213 -28.07151 -26.28253 -25.26985 -25.00781 -23.37227 -21.91501 -21.14409 -20.12527 -18.66578 -18.03018 -17.92268 -17.47728 -16.89576 -16.60242 -16.02352 -15.49282 -15.39698 -14.65141 -14.52882 -14.44725 -14.20268 -13.71349 -13.57485 -13.39628 -13.22189 -13.11827 -12.81738 -12.64225 -12.42197 -12.37597 -11.86143 -11.75922 -11.68093 -11.45239 -11.21150 -10.80381 -10.71038 -10.59093 -10.39374 -10.03962 -9.86582 -9.60421 -9.27692 -9.24761 -8.76687 -8.09025 -7.10861 -6.39476 -3.97984 -0.16224 0.27991 1.08020 2.29482 2.31474 2.72941 2.75627 3.14117 3.16819 3.19433 3.20958 3.41387 3.54204 3.56648 4.01658 4.27561 4.34149 4.49696 4.60034 4.97732 5.11915 5.13869 5.26141 5.31322 5.37791 5.42634 5.49689 5.69951 5.78644 5.90559 6.16376 6.27510 6.37422 6.47758 6.76097 6.90766 6.97284 7.10769 7.28956 7.36442 7.42752 7.50820 7.89867 8.05772 8.27353 9.06152 9.77020 10.78597 Molecular weight = 347.08amu Principal moments of inertia in cm(-1) A = 0.024605 B = 0.001838 C = 0.001773 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1137.711408 B =15227.994125 C =15785.793984 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.864 5.864 2 C 0.038 3.962 3 Si 0.941 3.059 4 H -0.270 1.270 5 H -0.278 1.278 6 H -0.270 1.270 7 C -0.391 4.391 8 H 0.091 0.909 9 O -0.178 6.178 10 C 0.157 3.843 11 C -0.232 4.232 12 C -0.056 4.056 13 C -0.171 4.171 14 C -0.078 4.078 15 C 0.513 3.487 16 O -0.514 6.514 17 N -0.733 5.733 18 C 0.170 3.830 19 C 0.084 3.916 20 N -0.406 5.406 21 C 0.054 3.946 22 C 0.075 3.925 23 N -0.432 5.432 24 C 0.135 3.865 25 Cl 0.003 6.997 26 C -0.059 4.059 27 C -0.192 4.192 28 H 0.270 0.730 29 H 0.126 0.874 30 H 0.104 0.896 31 H 0.093 0.907 32 H 0.093 0.907 33 H 0.398 0.602 34 H 0.094 0.906 35 H 0.094 0.906 36 H 0.183 0.817 37 H 0.183 0.817 38 H 0.108 0.892 39 H 0.116 0.884 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.220 -25.711 5.645 31.456 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.499 5.499 2 C -0.166 4.166 3 Si 0.765 3.235 4 H -0.195 1.195 5 H -0.203 1.203 6 H -0.195 1.195 7 C -0.467 4.467 8 H 0.109 0.891 9 O -0.082 6.082 10 C 0.103 3.897 11 C -0.252 4.252 12 C -0.074 4.074 13 C -0.172 4.172 14 C -0.117 4.117 15 C 0.300 3.700 16 O -0.387 6.387 17 N -0.389 5.389 18 C 0.045 3.955 19 C -0.058 4.058 20 N -0.121 5.121 21 C -0.106 4.106 22 C -0.086 4.086 23 N -0.148 5.148 24 C -0.032 4.032 25 Cl 0.032 6.968 26 C -0.077 4.077 27 C -0.211 4.211 28 H 0.080 0.920 29 H 0.144 0.856 30 H 0.122 0.878 31 H 0.111 0.889 32 H 0.111 0.889 33 H 0.231 0.769 34 H 0.112 0.888 35 H 0.112 0.888 36 H 0.200 0.800 37 H 0.200 0.800 38 H 0.126 0.874 39 H 0.134 0.866 Dipole moment (debyes) X Y Z Total from point charges 16.268 -24.895 6.269 30.393 hybrid contribution 0.735 0.247 -0.168 0.793 sum 17.003 -24.648 6.101 30.558 Atomic orbital electron populations 1.70033 1.05935 1.27688 1.46214 1.25283 0.95843 0.98803 0.96632 0.85788 0.78690 0.79827 0.79160 1.19542 1.20318 1.19504 1.21277 0.91768 0.80867 1.52790 0.89141 1.83977 1.34342 1.11452 1.78401 1.19384 0.90301 0.88030 0.91989 1.21102 0.93804 0.98763 1.11509 1.20509 0.98046 0.91766 0.97099 1.18613 0.93190 0.92711 1.12695 1.20395 1.01311 0.98198 0.91842 1.21093 0.77011 0.79511 0.92355 1.90768 1.49470 1.46481 1.51963 1.45958 1.57534 1.28677 1.06685 1.20072 0.98304 0.92068 0.85005 1.22061 0.91098 0.94731 0.97906 1.68482 1.05083 1.31213 1.07325 1.24023 1.02454 0.88555 0.95599 1.23922 0.89589 1.00066 0.95024 1.67918 1.07687 1.29891 1.09310 1.22795 0.89882 0.90839 0.99732 1.98470 1.04083 1.98320 1.95957 1.20399 0.92750 0.96711 0.97877 1.20154 0.99484 0.90290 1.11152 0.92034 0.85605 0.87808 0.88911 0.88866 0.76871 0.88827 0.88783 0.80023 0.80026 0.87368 0.86560 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.86 -25.82 13.67 55.48 0.76 -25.06 16 2 C 0.04 1.08 5.49 -17.52 -0.10 0.98 16 3 Si 0.94 20.98 29.55 -169.99 -5.02 15.96 16 4 H -0.27 -5.80 7.11 56.52 0.40 -5.40 16 5 H -0.28 -6.05 7.11 56.52 0.40 -5.65 16 6 H -0.27 -5.87 7.11 56.52 0.40 -5.46 16 7 C -0.39 -11.20 9.49 30.89 0.29 -10.91 16 8 H 0.09 2.40 5.20 -52.49 -0.27 2.13 16 9 O -0.18 -5.24 9.76 0.04 0.00 -5.24 16 10 C 0.16 3.94 6.65 -39.11 -0.26 3.68 16 11 C -0.23 -5.26 9.17 -39.40 -0.36 -5.63 16 12 C -0.06 -1.07 9.69 -39.61 -0.38 -1.45 16 13 C -0.17 -2.98 4.38 -104.58 -0.46 -3.43 16 14 C -0.08 -0.95 5.83 -29.03 -0.17 -1.12 16 15 C 0.51 6.91 7.82 -10.99 -0.09 6.82 16 16 O -0.51 -9.46 16.03 5.55 0.09 -9.37 16 17 N -0.73 -7.19 5.55 -61.47 -0.34 -7.53 16 18 C 0.17 1.66 5.58 -5.19 -0.03 1.63 16 19 C 0.08 0.71 6.16 -82.37 -0.51 0.20 16 20 N -0.41 -3.19 10.42 -9.26 -0.10 -3.28 16 21 C 0.05 0.25 11.22 -17.38 -0.20 0.06 16 22 C 0.07 0.34 11.22 -17.38 -0.20 0.15 16 23 N -0.43 -3.39 10.49 -10.17 -0.11 -3.50 16 24 C 0.13 1.15 7.28 -17.27 -0.13 1.02 16 25 Cl 0.00 0.03 27.48 -51.86 -1.42 -1.40 16 26 C -0.06 -1.10 9.69 -39.61 -0.38 -1.48 16 27 C -0.19 -4.23 9.99 -39.39 -0.39 -4.62 16 28 H 0.27 7.41 8.31 -40.82 -0.34 7.07 16 29 H 0.13 2.84 5.64 -52.48 -0.30 2.54 16 30 H 0.10 1.69 8.06 -52.49 -0.42 1.27 16 31 H 0.09 0.93 8.08 -51.93 -0.42 0.51 16 32 H 0.09 0.91 8.08 -51.93 -0.42 0.49 16 33 H 0.40 2.91 8.46 -40.82 -0.35 2.57 16 34 H 0.09 0.96 6.91 -51.93 -0.36 0.60 16 35 H 0.09 1.01 8.14 -51.93 -0.42 0.59 16 36 H 0.18 0.19 8.06 -52.48 -0.42 -0.24 16 37 H 0.18 0.14 8.06 -52.48 -0.42 -0.29 16 38 H 0.11 1.68 8.06 -52.49 -0.42 1.26 16 39 H 0.12 2.47 8.06 -52.48 -0.42 2.05 16 LS Contribution 363.06 15.07 5.47 5.47 Total: -1.00 -36.22 363.06 -7.81 -44.03 By element: Atomic # 1 Polarization: 7.81 SS G_CDS: -3.78 Total: 4.03 kcal Atomic # 6 Polarization: -10.76 SS G_CDS: -3.35 Total: -14.11 kcal Atomic # 7 Polarization: -39.59 SS G_CDS: 0.21 Total: -39.38 kcal Atomic # 8 Polarization: -14.70 SS G_CDS: 0.09 Total: -14.61 kcal Atomic # 14 Polarization: 20.98 SS G_CDS: -5.02 Total: 15.96 kcal Atomic # 17 Polarization: 0.03 SS G_CDS: -1.42 Total: -1.40 kcal Total LS contribution 5.47 Total: 5.47 kcal Total: -36.22 -7.81 -44.03 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000808067123.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 53.592 kcal (2) G-P(sol) polarization free energy of solvation -36.225 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 17.367 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.809 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.033 kcal (6) G-S(sol) free energy of system = (1) + (5) 9.559 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds